IVF0000471 (gene) Melon (IVF77) v1

Overview
NameIVF0000471
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 31412910 .. 31413209 (-)
RNA-Seq ExpressionIVF0000471
SyntenyIVF0000471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTACTGTATTTGTTTTGGAGCGCAGAAGAAGAAAAAGAGCAATAATCAAACAGATGGGCACAAAGGTGGCCGGAAATTCAGACCGCCGAGAGGACACGGAGGGAGAGCGGCAGGTGGTGGTTCCGGCGCTGGAAATGGTAACTTGGCTGTTCTGACTGATCATGATGGTGGTGTTGCCTTGGCGGCGACGACGCTTGGTTTTGCGGTTGCTGCAGCTGCGTTAGTTGATGCTGGGGAACATGGCGGAAGCTGTGGTGGTGGAGAGTGCGGCGGTGGTGGCTGTGGTGGTGGTTGA

mRNA sequence

ATGAATTACTGTATTTGTTTTGGAGCGCAGAAGAAGAAAAAGAGCAATAATCAAACAGATGGGCACAAAGGTGGCCGGAAATTCAGACCGCCGAGAGGACACGGAGGGAGAGCGGCAGGTGGTGGTTCCGGCGCTGGAAATGGTAACTTGGCTGTTCTGACTGATCATGATGGTGGTGTTGCCTTGGCGGCGACGACGCTTGGTTTTGCGGTTGCTGCAGCTGCGTTAGTTGATGCTGGGGAACATGGCGGAAGCTGTGGTGGTGGAGAGTGCGGCGGTGGTGGCTGTGGTGGTGGTTGA

Coding sequence (CDS)

ATGAATTACTGTATTTGTTTTGGAGCGCAGAAGAAGAAAAAGAGCAATAATCAAACAGATGGGCACAAAGGTGGCCGGAAATTCAGACCGCCGAGAGGACACGGAGGGAGAGCGGCAGGTGGTGGTTCCGGCGCTGGAAATGGTAACTTGGCTGTTCTGACTGATCATGATGGTGGTGTTGCCTTGGCGGCGACGACGCTTGGTTTTGCGGTTGCTGCAGCTGCGTTAGTTGATGCTGGGGAACATGGCGGAAGCTGTGGTGGTGGAGAGTGCGGCGGTGGTGGCTGTGGTGGTGGTTGA

Protein sequence

MNYCICFGAQKKKKSNNQTDGHKGGRKFRPPRGHGGRAAGGGSGAGNGNLAVLTDHDGGVALAATTLGFAVAAAALVDAGEHGGSCGGGECGGGGCGGG
Homology
BLAST of IVF0000471 vs. ExPASy TrEMBL
Match: A0A0A0LDL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.5e-31
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 0

Query: 2  NYCICFGA-QKKKKS--NNQTDGHKGGRKFRPPRGHGGRAAGGGSGAGNGNLAVLTD-HD 61
          NYCICFGA QKKKKS  NNQTDGHKGGRKFRPPRGHGGR   GGSGAGNGNLAVLTD HD
Sbjct: 3  NYCICFGAGQKKKKSNNNNQTDGHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHD 62

Query: 62 GGVALAATTLGFAVAAAALVDAGEHGGSCGGGECGGG 95
          GGVA+ A TLGFAVAAAA+VD  EHGGSCGGGECGGG
Sbjct: 63 GGVAMVA-TLGFAVAAAAVVDVAEHGGSCGGGECGGG 98

BLAST of IVF0000471 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122 bits (306), Expect = 9.52e-34
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 4  CICFGAQKKKKSNNQTDGHKGGRKFRPPRGHGGRAAGGGSGAGNGNLAVLTDHDGGVALA 63
          CICF   K+KK +NQ  G KG RKFRPPRG+ G  A GGS  GNGNL VLTDHDGGV LA
Sbjct: 3  CICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVVLA 62

Query: 64 ATTLGFAVAAAALVDAGEHGGSCGGGECGG-GGCGGG 99
           +T GFAVAAAA+VDAGEHGGSCGGGECGG GGCGGG
Sbjct: 63 -STFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGG 98

BLAST of IVF0000471 vs. NCBI nr
Match: KAG6580518.1 (hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (276), Expect = 1.43e-28
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 4   CICFGAQKKKKSNNQTDGHKGGRKFRPPRGHGGRAAGGGSGAGNGNLAVLTDHDGGVALA 63
           CICF   K++K++NQ  G  G RKFRPPRG+ G  A   S  GNGNL VLTDHDGGV LA
Sbjct: 57  CICFRGPKEEKNSNQAHGDNGARKFRPPRGYSGGTAAAASTPGNGNLTVLTDHDGGVVLA 116

Query: 64  ATTLGFAVAAAALVDAGEHGGSCGG-GECGGGGCGGG 99
            +T GFAVAAAA+VDAGEHGG CGG G CGGGGCGGG
Sbjct: 117 -STFGFAVAAAAVVDAGEHGGECGGAGGCGGGGCGGG 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDL85.5e-3186.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_023528737.19.52e-3475.26loricrin-like [Cucurbita pepo subsp. pepo][more]
KAG6580518.11.43e-2869.07hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000471.1IVF0000471.1mRNA