IVF0000461 (gene) Melon (IVF77) v1

Overview
NameIVF0000461
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPE-PGRS family protein PE_PGRS47
Locationchr08: 4725214 .. 4725615 (-)
RNA-Seq ExpressionIVF0000461
SyntenyIVF0000461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATTTTGATGGAGGTGGTGATGAGAAAGGAAAGGTCGGCAATGGCATGGTTGGTGGTGTGGTAGGAACTAAGGGAATTGTTGGTAATGGTGGCAAAGGAGGTAAGGTAGCCTTTGGCAAAGCTGGTGCTGAAGGCAATGGAGGCAGTGTAGCTCTTGGCAGGGTTGGCATCGGAGGGAGTGGAGGCAGAGCAGCGTTTGGCAGTGGTGGCACTGTGACCTTGGGCAGAGGCGGCAGTGGAGGAATTGGAGGTATAGATGGGAATGGAGGTGGAGCTGGTGGTGTATCAAGAAGGCGACGAGAACTAGCAAAGTTCACGTTGATGCTTGCCAATGACAAGGACGCGAATAATAATAACTTCAAGCAACTGTTGAAAGCAGCCATGGTCTTGAATTAG

mRNA sequence

ATGGTTCATTTTGATGGAGGTGGTGATGAGAAAGGAAAGGTCGGCAATGGCATGGTTGGTGGTGTGGTAGGAACTAAGGGAATTGTTGGTAATGGTGGCAAAGGAGGTAAGGTAGCCTTTGGCAAAGCTGGTGCTGAAGGCAATGGAGGCAGTGTAGCTCTTGGCAGGGTTGGCATCGGAGGGAGTGGAGGCAGAGCAGCGTTTGGCAGTGGTGGCACTGTGACCTTGGGCAGAGGCGGCAGTGGAGGAATTGGAGGTATAGATGGGAATGGAGGTGGAGCTGGTGGTGTATCAAGAAGGCGACGAGAACTAGCAAAGTTCACGTTGATGCTTGCCAATGACAAGGACGCGAATAATAATAACTTCAAGCAACTGTTGAAAGCAGCCATGGTCTTGAATTAG

Coding sequence (CDS)

ATGGTTCATTTTGATGGAGGTGGTGATGAGAAAGGAAAGGTCGGCAATGGCATGGTTGGTGGTGTGGTAGGAACTAAGGGAATTGTTGGTAATGGTGGCAAAGGAGGTAAGGTAGCCTTTGGCAAAGCTGGTGCTGAAGGCAATGGAGGCAGTGTAGCTCTTGGCAGGGTTGGCATCGGAGGGAGTGGAGGCAGAGCAGCGTTTGGCAGTGGTGGCACTGTGACCTTGGGCAGAGGCGGCAGTGGAGGAATTGGAGGTATAGATGGGAATGGAGGTGGAGCTGGTGGTGTATCAAGAAGGCGACGAGAACTAGCAAAGTTCACGTTGATGCTTGCCAATGACAAGGACGCGAATAATAATAACTTCAAGCAACTGTTGAAAGCAGCCATGGTCTTGAATTAG

Protein sequence

MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNNNFKQLLKAAMVLN
Homology
BLAST of IVF0000461 vs. ExPASy Swiss-Prot
Match: Q79FB3 (PE-PGRS family protein PE_PGRS47 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=PE_PGRS47 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.8e-05
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 6   GGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSGGR 65
           GG  + G  GNG VGG  G  G  GNGG GG    GK G+ GNGG+  L   G GG+GG 
Sbjct: 436 GGESDNGDGGNGGVGGKAGLVGEGGNGGDGGATIAGKGGSGGNGGNAWL--TGQGGNGGN 495

Query: 66  AAFGSGGTVTLGRGGSGGIGGIDGNGGGAG 96
           AAFG  GT ++G GG+GG+  ++G  G  G
Sbjct: 496 AAFGKAGTGSVGVGGAGGL--LEGQNGENG 521

BLAST of IVF0000461 vs. ExPASy Swiss-Prot
Match: B2HE92 (PE cleavage protein A OS=Mycobacterium marinum (strain ATCC BAA-535 / M) OX=216594 GN=pecA PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.7e-04
Identity = 45/96 (46.88%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 4   FDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSG 63
           F  GG    + G G+VGG  G+ G++GNGG GG    G  G  G  G    G  GIGG+G
Sbjct: 142 FGNGGIGYSQTGAGIVGGAGGSAGLIGNGGAGGTGGAGATGGAGGNGGWLFGSGGIGGTG 201

Query: 64  GRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAG-GVS 99
           G  A G+GGT   G GGS G+ G  GNGG  G G+S
Sbjct: 202 GANALGTGGTG--GLGGSAGLFGGGGNGGAGGLGIS 235

BLAST of IVF0000461 vs. ExPASy TrEMBL
Match: A0A5D3CLF9 (Putative PE-PGRS family protein PE_PGRS46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003210 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.2e-58
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG 60
           MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG
Sbjct: 1   MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG 60

Query: 61  GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN 120
           GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN
Sbjct: 61  GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN 120

Query: 121 NFKQLLKAAMVLN 134
           NFKQLLKAAMVLN
Sbjct: 121 NFKQLLKAAMVLN 133

BLAST of IVF0000461 vs. ExPASy TrEMBL
Match: A0A1S3B3B8 (uncharacterized PE-PGRS family protein PE_PGRS46-like OS=Cucumis melo OX=3656 GN=LOC103485341 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.2e-58
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG 60
           MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG
Sbjct: 1   MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG 60

Query: 61  GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN 120
           GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN
Sbjct: 61  GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN 120

Query: 121 NFKQLLKAAMVLN 134
           NFKQLLKAAMVLN
Sbjct: 121 NFKQLLKAAMVLN 133

BLAST of IVF0000461 vs. ExPASy TrEMBL
Match: A0A0A0KLS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499075 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.3e-34
Identity = 92/106 (86.79%), Postives = 94/106 (88.68%), Query Frame = 0

Query: 28  IVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSGGRAAFGSGGTVTLGRGGSGGIGGI 87
           +VGNGGK GKVAFG AGAEGNGG+VALG VGIGGSGGRAA GSGGTV LGRGGSGGIGGI
Sbjct: 1   MVGNGGKVGKVAFGSAGAEGNGGNVALGSVGIGGSGGRAALGSGGTVALGRGGSGGIGGI 60

Query: 88  DGNGGGAGGVSRRRRELAKFTLMLANDKDANNNNFKQLLKAAMVLN 134
           D NGGGA GVSRRRRELAKF LMLANDKD  N NFKQLLK AMVLN
Sbjct: 61  DRNGGGAAGVSRRRRELAKFMLMLANDKDTINKNFKQLLKTAMVLN 106

BLAST of IVF0000461 vs. ExPASy TrEMBL
Match: A0A498HVN6 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_021242 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.3e-05
Identity = 61/136 (44.85%), Postives = 71/136 (52.21%), Query Frame = 0

Query: 6   GGGDEKGKVGNGMVG-------GVVGTKGIVGNGGK---GGKVAFGKAGAEGNGGSVALG 65
           G G   G+VGN + G       G VGT G VGNG +   GGKVA G  G+EGNGG+V  G
Sbjct: 35  GNGGRVGRVGNWVEGNGGNVAFGRVGTVGSVGNGVEGRGGGKVALGCVGSEGNGGNVVFG 94

Query: 66  RVGIGGSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDK 125
           RVGI G+GG   FG  G V           G    GGGA GVS+R R  A     L +D 
Sbjct: 95  RVGIEGNGGIVVFGRDGIV-----------GTVNAGGGAAGVSKRWR-AAWLIWTLESDS 154

Query: 126 DANNNNFKQLLKAAMV 132
            A  N  K++L  AMV
Sbjct: 155 TATENRRKKILGKAMV 158

BLAST of IVF0000461 vs. ExPASy TrEMBL
Match: A0A498KQ53 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_014438 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.7e-04
Identity = 60/135 (44.44%), Postives = 71/135 (52.59%), Query Frame = 0

Query: 17  GMVGGVVGTKGIV------------GNG--GKGGKVAFGKAGAEGNGGSVALGRVGIGGS 76
           G+V G+VG +GIV            GNG  G+GGKVA G  G EGNGG+V LG VG  G+
Sbjct: 3   GIVDGIVGIEGIVVGNDGSGLAGNGGNGLEGRGGKVALGCVGNEGNGGNVVLGCVGNEGN 62

Query: 77  GGRAAF------GSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKD 132
           GG          G+GG V  GR G  G G     GGGA GVS+R R  A     L +D  
Sbjct: 63  GGNVVLGRVGTEGNGGNVVFGRDGMVGTGSA---GGGAAGVSKRWR-AAWLIRTLESDST 122

BLAST of IVF0000461 vs. NCBI nr
Match: XP_008441114.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46-like [Cucumis melo] >KAA0036339.1 putative PE-PGRS family protein PE_PGRS46-like [Cucumis melo var. makuwa] >TYK12733.1 putative PE-PGRS family protein PE_PGRS46-like [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 6.16e-77
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG 60
           MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG
Sbjct: 1   MVHFDGGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIG 60

Query: 61  GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN 120
           GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN
Sbjct: 61  GSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNN 120

Query: 121 NFKQLLKAAMVLN 133
           NFKQLLKAAMVLN
Sbjct: 121 NFKQLLKAAMVLN 133

BLAST of IVF0000461 vs. NCBI nr
Match: KAE8647548.1 (hypothetical protein Csa_003491 [Cucumis sativus])

HSP 1 Score: 152 bits (384), Expect = 8.86e-45
Identity = 100/122 (81.97%), Postives = 102/122 (83.61%), Query Frame = 0

Query: 14  VGNG-MVGGVV-GTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSGGRAAFGSG 73
           VGNG  VG V  G+ G  GNGGK GKVAFG AGAEGNGG+VALG VGIGGSGGRAA GSG
Sbjct: 2   VGNGGKVGKVAFGSAGAEGNGGKVGKVAFGNAGAEGNGGNVALGSVGIGGSGGRAALGSG 61

Query: 74  GTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLMLANDKDANNNNFKQLLKAAMV 133
           GTV LGRGGSGGIGGID NGGGA GVSRRRRELAKF LMLANDKD  N NFKQLLK AMV
Sbjct: 62  GTVALGRGGSGGIGGIDRNGGGAAGVSRRRRELAKFMLMLANDKDTINKNFKQLLKTAMV 121

BLAST of IVF0000461 vs. NCBI nr
Match: RXH74062.1 (hypothetical protein DVH24_021242 [Malus domestica])

HSP 1 Score: 57.0 bits (136), Expect = 5.61e-07
Identity = 62/141 (43.97%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 1   MVHFDGGGDEKGKVGNGMVG-------GVVGTKGIVGNGGKG---GKVAFGKAGAEGNGG 60
           +V   G G   G+VGN + G       G VGT G VGNG +G   GKVA G  G+EGNGG
Sbjct: 30  VVGRVGNGGRVGRVGNWVEGNGGNVAFGRVGTVGSVGNGVEGRGGGKVALGCVGSEGNGG 89

Query: 61  SVALGRVGIGGSGGRAAFGSGGTVTLGRGGSGGIGGIDGNGGGAGGVSRRRRELAKFTLM 120
           +V  GRVGI G+GG   FG  G V           G    GGGA GVS+R R  A     
Sbjct: 90  NVVFGRVGIEGNGGIVVFGRDGIV-----------GTVNAGGGAAGVSKRWR-AAWLIWT 149

Query: 121 LANDKDANNNNFKQLLKAAMV 131
           L +D  A  N  K++L  AMV
Sbjct: 150 LESDSTATENRRKKILGKAMV 158

BLAST of IVF0000461 vs. NCBI nr
Match: WP_031699561.1 (hypothetical protein, partial [Mycobacterium tuberculosis])

HSP 1 Score: 53.5 bits (127), Expect = 3.68e-06
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 6  GGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSGGR 65
          GGG + G  GNG VGG  G  G  GNGG GG    GK G+ GNGG+  L   G GG+GG 
Sbjct: 17 GGGSDNGDGGNGGVGGKAGLVGEGGNGGDGGATIAGKGGSGGNGGNAWL--TGQGGNGGN 76

Query: 66 AAFGSGGTVTLGRGGSGGI 84
          AAFG  GT ++G GG+GG+
Sbjct: 77 AAFGKAGTGSVGVGGAGGL 93

BLAST of IVF0000461 vs. NCBI nr
Match: WP_193693732.1 (PE-PGRS family protein [Mycobacterium tuberculosis] >CKM06699.1 Uncharacterised protein [Mycobacterium tuberculosis] >CLA12715.1 Uncharacterised protein [Mycobacterium tuberculosis])

HSP 1 Score: 53.5 bits (127), Expect = 5.91e-06
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 6   GGGDEKGKVGNGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNGGSVALGRVGIGGSGGR 65
           GGG + G  GNG VGG  G  G  GNGG GG    GK G+ GNGG+  L   G GG+GG 
Sbjct: 40  GGGSDNGDGGNGGVGGKAGLVGEGGNGGDGGATIAGKGGSGGNGGNAWL--TGQGGNGGN 99

Query: 66  AAFGSGGTVTLGRGGSGGI 84
           AAFG  GT ++G GG+GG+
Sbjct: 100 AAFGKAGTGSVGVGGAGGL 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q79FB38.8e-0548.89PE-PGRS family protein PE_PGRS47 OS=Mycobacterium tuberculosis (strain ATCC 2561... [more]
B2HE925.7e-0446.88PE cleavage protein A OS=Mycobacterium marinum (strain ATCC BAA-535 / M) OX=2165... [more]
Match NameE-valueIdentityDescription
A0A5D3CLF93.2e-58100.00Putative PE-PGRS family protein PE_PGRS46-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3B3B83.2e-58100.00uncharacterized PE-PGRS family protein PE_PGRS46-like OS=Cucumis melo OX=3656 GN... [more]
A0A0A0KLS69.3e-3486.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499075 PE=4 SV=1[more]
A0A498HVN65.3e-0544.85Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_021242 PE=4 SV=1[more]
A0A498KQ537.7e-0444.44Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_014438 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008441114.16.16e-77100.00PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46-like [Cucumis melo] ... [more]
KAE8647548.18.86e-4581.97hypothetical protein Csa_003491 [Cucumis sativus][more]
RXH74062.15.61e-0743.97hypothetical protein DVH24_021242 [Malus domestica][more]
WP_031699561.13.68e-0653.16hypothetical protein, partial [Mycobacterium tuberculosis][more]
WP_193693732.15.91e-0653.16PE-PGRS family protein [Mycobacterium tuberculosis] >CKM06699.1 Uncharacterised ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000461.1IVF0000461.1mRNA