IVF0000439 (gene) Melon (IVF77) v1

Overview


Name	IVF0000439
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Drebrin-like
Location	chr01: 20104417 .. 20104692 (-)
RNA-Seq Expression	IVF0000439
Synteny	IVF0000439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGCATAATGTTGGTATATTGCATAATGGAGGAAATTCCTATGAACATAGGTGAGATAATAAGTGAGCACATTATAGCTTGGGTTAAGCATCTTCATGGAGCAAGACCCTTCTCATACCTAATTGAGAAATTTTACTTAAAGGCATGTTTGGCATTAAATCAGCTTCCTCAAGTAGAGGTGAAGGATGGGGTTTGGCCTGTCGCAACCCTTCACCACATAATTGTCGTCCATAAGAACAAGACAAAGTTAAAACACCTTAAAACCAAATAA

mRNA sequence

ATGGAGCGCATAATGTTGGTATATTGCATAATGGAGGAAATTCCTATGAACATAGGTGAGATAATAAGTGAGCACATTATAGCTTGGGTTAAGCATCTTCATGGAGCAAGACCCTTCTCATACCTAATTGAGAAATTTTACTTAAAGGCATGTTTGGCATTAAATCAGCTTCCTCAAGTAGAGGTGAAGGATGGGGTTTGGCCTGTCGCAACCCTTCACCACATAATTGTCGTCCATAAGAACAAGACAAAGTTAAAACACCTTAAAACCAAATAA

Coding sequence (CDS)

ATGGAGCGCATAATGTTGGTATATTGCATAATGGAGGAAATTCCTATGAACATAGGTGAGATAATAAGTGAGCACATTATAGCTTGGGTTAAGCATCTTCATGGAGCAAGACCCTTCTCATACCTAATTGAGAAATTTTACTTAAAGGCATGTTTGGCATTAAATCAGCTTCCTCAAGTAGAGGTGAAGGATGGGGTTTGGCCTGTCGCAACCCTTCACCACATAATTGTCGTCCATAAGAACAAGACAAAGTTAAAACACCTTAAAACCAAATAA

Protein sequence

MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQVEVKDGVWPVATLHHIIVVHKNKTKLKHLKTK

Homology

[Close]

BLAST of IVF0000439 vs. ExPASy TrEMBL
Match: A0A5D3D2B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001360 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV
Sbjct: 107 MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 166

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 92
           EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK
Sbjct: 167 EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 197

[Close]

BLAST of IVF0000439 vs. ExPASy TrEMBL
Match: A0A0A0LAN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           MER+MLVYCIM++I +NIG+IIS HIIA VKH  GARPFSYLIE+  L+ACL L +LPQV
Sbjct: 48  MERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQV 107

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 92
           EVKDG+W  +TLH II +HKNK K+K LKTK
Sbjct: 108 EVKDGIWLPSTLHRIIAIHKNKAKIKCLKTK 138

[Close]

BLAST of IVF0000439 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 59/91 (64.84%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           M++I+L+YCIMEE+P+N+GEII EHI AWVKH  G+RPF +LIEK  LKAC +L +LPQV
Sbjct: 11  MDKIVLIYCIMEELPVNVGEIICEHIFAWVKHPQGSRPFPHLIEKLCLKACPSLEKLPQV 70

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 92
           EVKD V+  +TL+  I +HKNK++LKHLKTK
Sbjct: 71  EVKDRVYTASTLYCFIAIHKNKSRLKHLKTK 101

[Close]

BLAST of IVF0000439 vs. ExPASy TrEMBL
Match: A0A5A7VEP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001430 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-26
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           ME+ +LVYCIME + +NIG+IIS+HIIAWVKH H AR F +LIE+  LKACL+L QLP V
Sbjct: 12  MEQSVLVYCIMEHLLVNIGKIISKHIIAWVKHPHEARHFMHLIERLCLKACLSLEQLPYV 71

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 92
           EVKDGVW   TLH II VHKNK K K LKTK
Sbjct: 72  EVKDGVWNTTTLHRIIFVHKNKVKFKCLKTK 102

[Close]

BLAST of IVF0000439 vs. ExPASy TrEMBL
Match: A0A5D3BTN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00190 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-26
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           ME+ +LVYCIME + +NIG+IIS+HIIAWVKH H AR F +LIE+  LKACL+L QLP V
Sbjct: 12  MEQSVLVYCIMEHLLVNIGKIISKHIIAWVKHPHEARHFMHLIERLCLKACLSLEQLPYV 71

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 92
           EVKDGVW   TLH II VHKNK K K LKTK
Sbjct: 72  EVKDGVWNTTTLHRIIFVHKNKVKFKCLKTK 102

[Close]

BLAST of IVF0000439 vs. NCBI nr
Match: KAA0041933.1 (hypothetical protein E6C27_scaffold67G003500 [Cucumis melo var. makuwa] >TYK17865.1 hypothetical protein E5676_scaffold306G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 8.32e-59
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV
Sbjct: 107 MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 166

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 91
           EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK
Sbjct: 167 EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 197

[Close]

BLAST of IVF0000439 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_009739 [Cucumis sativus])

HSP 1 Score: 131 bits (330), Expect = 1.83e-36
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           MER+MLVYCIM++I +NIG+IIS HIIA VKH  GARPFSYLIE+  L+ACL L +LPQV
Sbjct: 48  MERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQV 107

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 91
           EVKDG+W  +TLH II +HKNK K+K LKTK
Sbjct: 108 EVKDGIWLPSTLHRIIAIHKNKAKIKCLKTK 138

[Close]

BLAST of IVF0000439 vs. NCBI nr
Match: KAA0046046.1 (hypothetical protein E6C27_scaffold243G006200 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 3.44e-35
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 1  MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
          MERI LVY I + + +NIGE+ISEHIIAWVKH  G RPF  LIE+  LKACL L Q PQV
Sbjct: 1  MERIKLVYYIKKHLLVNIGEMISEHIIAWVKHPCGLRPFPQLIERLCLKACLTLKQFPQV 60

Query: 61 EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 91
          E+KDGVW V TLHHII VHKNK K K  KTK
Sbjct: 61 ELKDGVWTVTTLHHIIAVHKNKAKFKRHKTK 91

[Close]

BLAST of IVF0000439 vs. NCBI nr
Match: KAA0064201.1 (hypothetical protein E6C27_scaffold548G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 1.42e-34
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           ME+ +LVYCIME + +NIG+IIS+HIIAWVKH H AR F +LIE+  LKACL+L QLP V
Sbjct: 12  MEQSVLVYCIMEHLLVNIGKIISKHIIAWVKHPHEARHFMHLIERLCLKACLSLEQLPYV 71

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 91
           EVKDGVW   TLH II VHKNK K K LKTK
Sbjct: 72  EVKDGVWNTTTLHRIIFVHKNKVKFKCLKTK 102

[Close]

BLAST of IVF0000439 vs. NCBI nr
Match: TYK02827.1 (hypothetical protein E5676_scaffold218G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 2.25e-34
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   MERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKACLALNQLPQV 60
           ME+ +LVYCIME + +NIG+IIS+HIIAWVKH H AR F +LIE+  LKACL+L QLP V
Sbjct: 12  MEQSVLVYCIMEHLLVNIGKIISKHIIAWVKHPHEARHFMHLIERLCLKACLSLEQLPYV 71

Query: 61  EVKDGVWPVATLHHIIVVHKNKTKLKHLKTK 91
           EVKDGVW   TLH II VHKNK K K LKTK
Sbjct: 72  EVKDGVWNTTTLHRIIFVHKNKVKFKCLKTK 102

The following BLAST results are available for this feature:

BLAST of IVF0000439 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2B5	1.8e-44	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LAN0	2.6e-27	70.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1	[more]
A0A5A7SRQ1	1.7e-26	64.84	Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P...	[more]
A0A5A7VEP3	6.4e-26	69.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BTN1	6.4e-26	69.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0000439 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041933.1	8.32e-59	100.00	hypothetical protein E6C27_scaffold67G003500 [Cucumis melo var. makuwa] >TYK1786...	[more]
KGN57727.1	1.83e-36	70.33	hypothetical protein Csa_009739 [Cucumis sativus]	[more]
KAA0046046.1	3.44e-35	69.23	hypothetical protein E6C27_scaffold243G006200 [Cucumis melo var. makuwa]	[more]
KAA0064201.1	1.42e-34	69.23	hypothetical protein E6C27_scaffold548G001430 [Cucumis melo var. makuwa]	[more]
TYK02827.1	2.25e-34	69.23	hypothetical protein E5676_scaffold218G00190 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0000439 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000439.1	IVF0000439.1	mRNA