IVF0000401 (gene) Melon (IVF77) v1

Overview


Name	IVF0000401
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr10: 8820512 .. 8820775 (+)
RNA-Seq Expression	IVF0000401
Synteny	IVF0000401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATTCTTACCGAAGACTCACCGTGGCCTGGAGTGAAGGAAGGGAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATTCTTACCGAAGACTCACCGTGGCCTGGAGTGAAGGAAGGGAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATTCTTACCGAAGACTCACCGTGGCCTGGAGTGAAGGAAGGGAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLTVAWSEGREA

Homology

[Close]

BLAST of IVF0000401 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.4e-22
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENN YRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VAWSEGREA 88
           V  S GR+A
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0000401 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.4e-22
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENN YRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VAWSEGREA 88
           V  S GR+A
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0000401 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNSYRR 77
           EN   R+
Sbjct: 136 ENPERRK 142

[Close]

BLAST of IVF0000401 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIENN YRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VAWSEGREA 88
           V  S GR+A
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0000401 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.2e-17
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIENN YRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VAWSEGREA 88
           V  S GR+A
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0000401 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 1.37e-29
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENN YRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VAWSEGREA 87
           V  S GR+A
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0000401 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 3.08e-28
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENN YRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VAWSEGREA 87
           V  S GR+A
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0000401 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 2.02e-27
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNSYRR 76
           EN   R+
Sbjct: 136 ENPERRK 142

[Close]

BLAST of IVF0000401 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 5.77e-26
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIENN YRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VAWSEGREA 87
           V  S GR+A
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0000401 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 2.45e-23
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNSYRRLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIENN YRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VAWSEGREA 87
           V  S GR+A
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:

BLAST of IVF0000401 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNL7	5.4e-22	84.06	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	5.4e-22	84.06	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UMJ9	2.0e-21	83.58	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	2.5e-19	78.26	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	5.2e-17	72.46	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0000401 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054655.1	1.37e-29	84.06	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	3.08e-28	84.06	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0057143.1	2.02e-27	83.58	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	5.77e-26	78.26	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	2.45e-23	72.46	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0000401 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000401.1	IVF0000401.1	mRNA