IVF0000326 (gene) Melon (IVF77) v1

Overview


Name	IVF0000326
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Copper centre Cu(A)
Location	chr07: 4097921 .. 4098115 (-)
RNA-Seq Expression	IVF0000326
Synteny	IVF0000326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAGGTGAATCCCACGGAGCGGGAAAGGAGAGTGAGGGAAGAGGGGGCTGTCCTCGGCCCGATTATCCTATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCTACTTCGTCACTTTCGTGTACCCATCGGACGACATCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGTGTAGATTGA

mRNA sequence

ATGACTCAAGGTGAATCCCACGGAGCGGGAAAGGAGAGTGAGGGAAGAGGGGGCTGTCCTCGGCCCGATTATCCTATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCTACTTCGTCACTTTCGTGTACCCATCGGACGACATCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGTGTAGATTGA

Coding sequence (CDS)

ATGACTCAAGGTGAATCCCACGGAGCGGGAAAGGAGAGTGAGGGAAGAGGGGGCTGTCCTCGGCCCGATTATCCTATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCTACTTCGTCACTTTCGTGTACCCATCGGACGACATCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGTGTAGATTGA

Protein sequence

MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDSLCVD

Homology

[Close]

BLAST of IVF0000326 vs. ExPASy TrEMBL
Match: A0A5A7VM57 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002490 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.6e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 60
           MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS
Sbjct: 176 MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 235

Query: 61  LCVD 65
           LCVD
Sbjct: 236 LCVD 239

[Close]

BLAST of IVF0000326 vs. ExPASy TrEMBL
Match: A0A5D3DWE9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002400 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.9e-30
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 60
           MTQGESHGAGKESEGRGGCPRPDY IRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS
Sbjct: 176 MTQGESHGAGKESEGRGGCPRPDYSIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 235

Query: 61  LCVD 65
           LCVD
Sbjct: 236 LCVD 239

[Close]

BLAST of IVF0000326 vs. ExPASy TrEMBL
Match: A0A5A7UDL7 (Copper centre Cu(A) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5492G00100 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1   MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGG 55
           MTQGESHGAGKESEG+ G PRPD+PIRSN+QAWFCSQSYFVTFVYPSDD PFGG
Sbjct: 128 MTQGESHGAGKESEGKRGSPRPDHPIRSNKQAWFCSQSYFVTFVYPSDDSPFGG 181

[Close]

BLAST of IVF0000326 vs. ExPASy TrEMBL
Match: A0A103TPE1 (Copper centre Cu(A) (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_025893 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 7   HGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDSLCV 64
           H   +   GRGG PRPD+PIRSNRQAWFCSQS FVTFVYPSD  PFGGSLGTDSLC+
Sbjct: 336 HIRERRXRGRGGSPRPDHPIRSNRQAWFCSQSNFVTFVYPSDGSPFGGSLGTDSLCL 392

[Close]

BLAST of IVF0000326 vs. ExPASy TrEMBL
Match: A0A0J8B9Z5 (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g200780 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 7  HGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDSLCVD 65
          H  G+   GRG   RPD+PIRSNR AW CSQS FVTFVYPSDD PFGGSLGTDSLCVD
Sbjct: 3  HIRGRRVRGRGDESRPDHPIRSNRPAWLCSQSNFVTFVYPSDDSPFGGSLGTDSLCVD 60

[Close]

BLAST of IVF0000326 vs. NCBI nr
Match: KAA0066855.1 (hypothetical protein E6C27_scaffold271G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 2.05e-40
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 60
           MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS
Sbjct: 176 MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 235

Query: 61  LCVD 64
           LCVD
Sbjct: 236 LCVD 239

[Close]

BLAST of IVF0000326 vs. NCBI nr
Match: TYK28003.1 (hypothetical protein E5676_scaffold384G002400 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (349), Expect = 3.32e-39
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 60
           MTQGESHGAGKESEGRGGCPRPDY IRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS
Sbjct: 176 MTQGESHGAGKESEGRGGCPRPDYSIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDS 235

Query: 61  LCVD 64
           LCVD
Sbjct: 236 LCVD 239

[Close]

BLAST of IVF0000326 vs. NCBI nr
Match: KAA0051621.1 (Copper centre Cu(A) [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 9.50e-28
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1   MTQGESHGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGG 54
           MTQGESHGAGKESEG+ G PRPD+PIRSN+QAWFCSQSYFVTFVYPSDD PFGG
Sbjct: 128 MTQGESHGAGKESEGKRGSPRPDHPIRSNKQAWFCSQSYFVTFVYPSDDSPFGG 181

[Close]

BLAST of IVF0000326 vs. NCBI nr
Match: KMS96692.1 (hypothetical protein BVRB_8g200780 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.0 bits (232), Expect = 1.32e-23
Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 7  HGAGKESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDSLCVD 64
          H  G+   GRG   RPD+PIRSNR AW CSQS FVTFVYPSDD PFGGSLGTDSLCVD
Sbjct: 3  HIRGRRVRGRGDESRPDHPIRSNRPAWLCSQSNFVTFVYPSDDSPFGGSLGTDSLCVD 60

[Close]

BLAST of IVF0000326 vs. NCBI nr
Match: KVH20946.1 (Copper centre Cu(A), partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 97.1 bits (240), Expect = 9.15e-22
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 11  KESEGRGGCPRPDYPIRSNRQAWFCSQSYFVTFVYPSDDIPFGGSLGTDSLCV 63
           +   GRGG PRPD+PIRSNRQAWFCSQS FVTFVYPSD  PFGGSLGTDSLC+
Sbjct: 340 RRXRGRGGSPRPDHPIRSNRQAWFCSQSNFVTFVYPSDGSPFGGSLGTDSLCL 392

The following BLAST results are available for this feature:

BLAST of IVF0000326 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VM57	4.6e-31	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DWE9	3.9e-30	98.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UDL7	7.4e-21	88.89	Copper centre Cu(A) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5492...	[more]
A0A103TPE1	1.7e-17	77.19	Copper centre Cu(A) (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=C...	[more]
A0A0J8B9Z5	1.1e-16	75.86	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g20078...	[more]

BLAST of IVF0000326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066855.1	2.05e-40	100.00	hypothetical protein E6C27_scaffold271G002490 [Cucumis melo var. makuwa]	[more]
TYK28003.1	3.32e-39	98.44	hypothetical protein E5676_scaffold384G002400 [Cucumis melo var. makuwa]	[more]
KAA0051621.1	9.50e-28	88.89	Copper centre Cu(A) [Cucumis melo var. makuwa]	[more]
KMS96692.1	1.32e-23	75.86	hypothetical protein BVRB_8g200780 [Beta vulgaris subsp. vulgaris]	[more]
KVH20946.1	9.15e-22	81.13	Copper centre Cu(A), partial [Cynara cardunculus var. scolymus]	[more]

BLAST of IVF0000326 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000326.1	IVF0000326.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004129	cytochrome-c oxidase activity