IVF0000290 (gene) Melon (IVF77) v1

Overview
NameIVF0000290
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 24053302 .. 24053991 (+)
RNA-Seq ExpressionIVF0000290
SyntenyIVF0000290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTTCGGCAGGCAGCTCACGCGTGCAGAACGGCTCAACAGGCGTTGGCGTGGAGCGATCGACTCACGGAGAAGGGGCGCGGGTCAAAAATCGGGTCGGTGGCGAGGCACAGCTGTTCAGGTCGGGTACGGGTGTGCGATTCAGGTTACGGAGGCGTGGCGCGGCTGTGCTTCGCAGGCTTCGACGATTGGCGCTCGACGTGCGACGGCGTGGCTAAGCAAGCGGCTGACGACGCGGCTGATTTCGTGGCTGTAGTTGACGGGAGAACTCAAGCGGGCGGCTGGAACTCGGCGTACAGCGGCTGCGGAACGAGCGGTTGGGCGACTGTCTGGCGCTCGATGTGCGGTGGCTGCGGGGCGAACGACTGGGCGACGATCTGGCGCTCGGCGTGCAGTGGCTGTGGAGCGACCGGTCGGCGATGGTGGTGCATGCAGCGGCTAGGGTTTCCTTTCCCCCTCTTCTCTTTCTTTTTTTCTCTCTCTTTTGCACGGGTTCCAAGGCTCATTTATAGAAAAGATAACCCAATATTAAATTCCCTTTTCCCTTTCCTTATTATATTTCCAAAACAACCCAACCTCCTCTCTCCTCATCTAAATCTCACCAAACTTTCCTTTTTCTCTTCTCCTTTTTTTTCTTTCCCAAATAAAACTCATAATCTCTCCCCTCAACCAACCAAACATCTTTAA

mRNA sequence

ATGACGGTTCGGCAGGCAGCTCACGCGTGCAGAACGGCTCAACAGGCGTTGGCGTGGAGCGATCGACTCACGGAGAAGGGGCGCGGGTCAAAAATCGGGTCGGTGGCGAGGCACAGCTGTTCAGGTCGGGTACGGGTGTGCGATTCAGGTTACGGAGGCGTGGCGCGGCTGTGCTTCGCAGGCTTCGACGATTGGCGCTCGACGTGCGACGGCGTGGCTAAGCAAGCGGCTGACGACGCGGCTGATTTCGTGGCTGTAGTTGACGGGAGAACTCAAGCGGGCGGCTGGAACTCGGCGTACAGCGGCTGCGGAACGAGCGGTTGGGCGACTGTCTGGCGCTCGATGTGCGGTGGCTGCGGGGCGAACGACTGGGCGACGATCTGGCGCTCGGCGTGCAGTGGCTGTGGAGCGACCGGTCGGCGATGGTGGTGCATGCAGCGGCTAGGGTTTCCTTTCCCCCTCTTCTCTTTCTTTTTTTCTCTCTCTTTTGCACGGGTTCCAAGGCTCATTTATAGAAAAGATAACCCAATATTAAATTCCCTTTTCCCTTTCCTTATTATATTTCCAAAACAACCCAACCTCCTCTCTCCTCATCTAAATCTCACCAAACTTTCCTTTTTCTCTTCTCCTTTTTTTTCTTTCCCAAATAAAACTCATAATCTCTCCCCTCAACCAACCAAACATCTTTAA

Coding sequence (CDS)

ATGACGGTTCGGCAGGCAGCTCACGCGTGCAGAACGGCTCAACAGGCGTTGGCGTGGAGCGATCGACTCACGGAGAAGGGGCGCGGGTCAAAAATCGGGTCGGTGGCGAGGCACAGCTGTTCAGGTCGGGTACGGGTGTGCGATTCAGGTTACGGAGGCGTGGCGCGGCTGTGCTTCGCAGGCTTCGACGATTGGCGCTCGACGTGCGACGGCGTGGCTAAGCAAGCGGCTGACGACGCGGCTGATTTCGTGGCTGTAGTTGACGGGAGAACTCAAGCGGGCGGCTGGAACTCGGCGTACAGCGGCTGCGGAACGAGCGGTTGGGCGACTGTCTGGCGCTCGATGTGCGGTGGCTGCGGGGCGAACGACTGGGCGACGATCTGGCGCTCGGCGTGCAGTGGCTGTGGAGCGACCGGTCGGCGATGGTGGTGCATGCAGCGGCTAGGGTTTCCTTTCCCCCTCTTCTCTTTCTTTTTTTCTCTCTCTTTTGCACGGGTTCCAAGGCTCATTTATAGAAAAGATAACCCAATATTAAATTCCCTTTTCCCTTTCCTTATTATATTTCCAAAACAACCCAACCTCCTCTCTCCTCATCTAAATCTCACCAAACTTTCCTTTTTCTCTTCTCCTTTTTTTTCTTTCCCAAATAAAACTCATAATCTCTCCCCTCAACCAACCAAACATCTTTAA

Protein sequence

MTVRQAAHACRTAQQALAWSDRLTEKGRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAVVDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGANDWATIWRSACSGCGATGRRWWCMQRLGFPFPLFSFFFSLSFARVPRLIYRKDNPILNSLFPFLIIFPKQPNLLSPHLNLTKLSFFSSPFFSFPNKTHNLSPQPTKHL
Homology
[Close]
BLAST of IVF0000290 vs. ExPASy TrEMBL
Match: A0A5A7V4I8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00130 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 0 

Query: 27  GRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAV 86
           GR SK  S AR  C GRVRVCDSG GG A+L FAGFDD  STCDGVA++AA + ADFVA 
Sbjct: 687 GRRSKTRSKARRDCLGRVRVCDSGCGGEAQLGFAGFDDRWSTCDGVAERAARNIADFVAT 746

Query: 87  VDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGAN 123
           VDGRT+  GWNSA      SGWAT+W S CGGC A+
Sbjct: 747 VDGRTRTDGWNSA-----CSGWATIWHSTCGGCKAS 777

[Close]
BLAST of IVF0000290 vs. NCBI nr
Match: KAA0060795.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 3.74e-27
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 0 

Query: 27  GRGSKIGSVARHSCSGRVRVCDSGYGGVARLCFAGFDDWRSTCDGVAKQAADDAADFVAV 86
           GR SK  S AR  C GRVRVCDSG GG A+L FAGFDD  STCDGVA++AA + ADFVA 
Sbjct: 687 GRRSKTRSKARRDCLGRVRVCDSGCGGEAQLGFAGFDDRWSTCDGVAERAARNIADFVAT 746

Query: 87  VDGRTQAGGWNSAYSGCGTSGWATVWRSMCGGCGAN 122
           VDGRT+  GWNSA      SGWAT+W S CGGC A+
Sbjct: 747 VDGRTRTDGWNSA-----CSGWATIWHSTCGGCKAS 777

The following BLAST results are available for this feature:
BLAST of IVF0000290 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0000290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V4I83.4e-2365.63Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of IVF0000290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060795.13.74e-2765.63ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0000290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000290.1IVF0000290.1mRNA