IVF0000239 (gene) Melon (IVF77) v1

Overview


Name	IVF0000239
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr01: 10674145 .. 10674659 (+)
RNA-Seq Expression	IVF0000239
Synteny	IVF0000239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGGTTAAGGTAAAAAGATGAATATAATTCATACTTTCTATAAAAGTAAAATATAATATACTTACATATGTTAACTCCATGTAGGGACACCCCAATGTTCGAAGCCTACTAAATAAACCATTTCCTTACTTCTATGACTTGGAAGTTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGACTGTAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAACACTTTGATATTCTAAATCCACATGGACTCGAGCTACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGTACATGATGTGAAATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGAGACCTCATGGACACATTTCATGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAACAATTGAAATAGAATCATCCCTACACAAACGATTATATGCTGAATAA

mRNA sequence

ATGACTAGGTTAAGAGATAGGGCTACTGGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGACTGTAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAACACTTTGATATTCTAAATCCACATGGACTCGAGCTACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGTACATGATGTGAAATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGAGACCTCATGGACACATTTCATGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAACAATTGAAATAGAATCATCCCTACACAAACGATTATATGCTGAATAA

Coding sequence (CDS)

ATGACTAGGTTAAGAGATAGGGCTACTGGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGACTGTAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAACACTTTGATATTCTAAATCCACATGGACTCGAGCTACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGTACATGATGTGAAATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGAGACCTCATGGACACATTTCATGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAACAATTGAAATAGAATCATCCCTACACAAACGATTATATGCTGAATAA

Protein sequence

MTRLRDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE

Homology

[Close]

BLAST of IVF0000239 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH
Sbjct: 432 RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 491

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 122
           DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE
Sbjct: 492 DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 548

[Close]

BLAST of IVF0000239 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH
Sbjct: 376 RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 435

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 122
           DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE
Sbjct: 436 DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 492

[Close]

BLAST of IVF0000239 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.5e-50
Identity = 104/117 (88.89%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKT VEM SQT RDTEEDDMDINLE FDI NPHGLE PSGEDMPSTPTSM H
Sbjct: 246 RDRATGGRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTH 305

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 122
           D  SSRPSKKRRSYSGDLMDTF ASMRETSKEIGKIA WQRE +EIESSLHKRLYAE
Sbjct: 306 DAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAE 362

[Close]

BLAST of IVF0000239 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 99/117 (84.62%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKT +EMG Q  RDTEEDDMDINLE FDI NPHGLE PSGEDM STPTSM H
Sbjct: 55  RDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAH 114

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 122
           DV SS+PSKKRRSYS DLMDTF ASMRETSKEI KIAAWQRE +EIESS+HKRLYAE
Sbjct: 115 DVGSSKPSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAE 171

[Close]

BLAST of IVF0000239 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 7   RATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDV 66
           +ATGGRCKT VE+GSQT RDTEEDDMDINLE FDI NPHGLE PSGEDMPSTPTSM HD 
Sbjct: 384 KATGGRCKTPVEIGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDA 443

Query: 67  KSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 122
              RPSKKRR YSGDLMDTF ASMRETSKEIGKIAAWQRE +EIESSLHKRLY E
Sbjct: 444 GLCRPSKKRRPYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYTE 498

[Close]

BLAST of IVF0000239 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (594), Expect = 3.54e-72
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH
Sbjct: 376 RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 435

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 121
           DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE
Sbjct: 436 DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 492

[Close]

BLAST of IVF0000239 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (594), Expect = 1.32e-71
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH
Sbjct: 432 RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 491

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 121
           DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE
Sbjct: 492 DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 548

[Close]

BLAST of IVF0000239 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 5.07e-62
Identity = 104/117 (88.89%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKT VEM SQT RDTEEDDMDINLE FDI NPHGLE PSGEDMPSTPTSM H
Sbjct: 246 RDRATGGRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTH 305

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 121
           D  SSRPSKKRRSYSGDLMDTF ASMRETSKEIGKIA WQRE +EIESSLHKRLYAE
Sbjct: 306 DAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAE 362

[Close]

BLAST of IVF0000239 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 194 bits (492), Expect = 2.65e-60
Identity = 99/117 (84.62%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKT +EMG Q  RDTEEDDMDINLE FDI NPHGLE PSGEDM STPTSM H
Sbjct: 54  RDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAH 113

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 121
           DV SS+PSKKRRSYS DLMDTF ASMRETSKEI KIAAWQRE +EIESS+HKRLYAE
Sbjct: 114 DVGSSKPSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAE 170

[Close]

BLAST of IVF0000239 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (492), Expect = 2.74e-60
Identity = 99/117 (84.62%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 5   RDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVH 64
           RDRATGGRCKT +EMG Q  RDTEEDDMDINLE FDI NPHGLE PSGEDM STPTSM H
Sbjct: 55  RDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAH 114

Query: 65  DVKSSRPSKKRRSYSGDLMDTFHASMRETSKEIGKIAAWQRETIEIESSLHKRLYAE 121
           DV SS+PSKKRRSYS DLMDTF ASMRETSKEI KIAAWQRE +EIESS+HKRLYAE
Sbjct: 115 DVGSSKPSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAE 171

The following BLAST results are available for this feature:

BLAST of IVF0000239 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3R2	2.2e-58	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7X6	2.2e-58	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C7T4	8.5e-50	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ0	1.5e-46	84.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG45	1.5e-46	85.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0000239 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08067.1	3.54e-72	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048191.1	1.32e-71	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	5.07e-62	88.89	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
XP_008460440.1	2.65e-60	84.62	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	2.74e-60	84.62	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0000239 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000239.1	IVF0000239.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034470	ncRNA processing
biological_process	GO:0001510	RNA methylation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding