IVF0000198 (gene) Melon (IVF77) v1

Overview


Name	IVF0000198
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 27256772 .. 27257149 (+)
RNA-Seq Expression	IVF0000198
Synteny	IVF0000198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGGAAAAGGTAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATTGCCCATATTCTTCTTCTAACTCTGCACCCTCACCCATGAGTGCAAATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCTAGATCAAGATCGTTCGACATGTAGATTGGATCTCCCACAGAGTCATCAACTCCACCTAGGCCTTCGGCCAATCTCATCCATTCTTCTGGTGGAGTCGTTCAAATGAGGCCTCCTGTCGCTCCTTCATCTAATAGGGAGTCTTCTACTCCACCTATAACTTATTCTCAAGCTATTTGTGGCAAGACTCGAGATCAAATCTTATTTTCAAAAACCTATCGTTGCTTATGA

mRNA sequence

ATGAGTTCGGAAAAGGTAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATTGCCCATATTCTTCTTCTAACTCTGCACCCTCACCCATGAGTGCAAATCAATATGCAATGGATTTAGGGTTTACCACGATTGGATCTCCCACAGAGTCATCAACTCCACCTAGGCCTTCGGCCAATCTCATCCATTCTTCTGGTGGAGTCGTTCAAATGAGGCCTCCTGTCGCTCCTTCATCTAATAGGGAGTCTTCTACTCCACCTATAACTTATTCTCAAGCTATTTGTGGCAAGACTCGAGATCAAATCTTATTTTCAAAAACCTATCGTTGCTTATGA

Coding sequence (CDS)

ATGAGTTCGGAAAAGGTAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATTGCCCATATTCTTCTTCTAACTCTGCACCCTCACCCATGAGTGCAAATCAATATGCAATGGATTTAGGGTTTACCACGATTGGATCTCCCACAGAGTCATCAACTCCACCTAGGCCTTCGGCCAATCTCATCCATTCTTCTGGTGGAGTCGTTCAAATGAGGCCTCCTGTCGCTCCTTCATCTAATAGGGAGTCTTCTACTCCACCTATAACTTATTCTCAAGCTATTTGTGGCAAGACTCGAGATCAAATCTTATTTTCAAAAACCTATCGTTGCTTATGA

Protein sequence

MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTTIGSPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAICGKTRDQILFSKTYRCL

Homology

[Close]

BLAST of IVF0000198 vs. ExPASy TrEMBL
Match: A0A5A7VIK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001030 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.1e-51
Identity = 112/125 (89.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT            IG
Sbjct: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTTVTRSRSRSFDIKIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAICGKTRDQILFSK 114
           SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQA+CGKTRDQILFSK
Sbjct: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAVCGKTRDQILFSK 120

[Close]

BLAST of IVF0000198 vs. ExPASy TrEMBL
Match: A0A5A7V4P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00900 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.7e-32
Identity = 90/131 (68.70%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MSSEK S RGRTNSTSSKGN P SSSNSAPSPMSA+QYAMDLGF T            IG
Sbjct: 1   MSSEKGSVRGRTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFATVTRSRSRSSDIRIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQ------AICGKTRD 114
           S TESST PRPS NLI    GVVQMRP   PSSNRESSTP   YSQ      A+C KTRD
Sbjct: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPLTAYSQAVTPDKAVCAKTRD 120

[Close]

BLAST of IVF0000198 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MSS+K SARGRTNSTSSKGN P SSSNSAPSP+SA+QYAMDLGFTT            IG
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAI 97
           SPTESSTPPRPS NLI  S GVVQMRPP +PSSNRESSTPP TYSQA+
Sbjct: 61  SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAV 108

[Close]

BLAST of IVF0000198 vs. ExPASy TrEMBL
Match: A0A5A7U8A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00530 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.3e-31
Identity = 82/117 (70.09%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MS EK +ARGRTNSTSSKGN P SSSNS PSPMSA+QYAMDLGFTT            IG
Sbjct: 1   MSLEKENARGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAICGKTRDQIL 106
           SPTESSTPP+PS NLI  SGGVVQMR PV+PSSNR+SSTPP TYSQA+    R ++L
Sbjct: 61  SPTESSTPPKPSTNLIRPSGGVVQMRSPVSPSSNRKSSTPPTTYSQAVTPDKRSKLL 117

[Close]

BLAST of IVF0000198 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.3e-30
Identity = 80/108 (74.07%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MSSEK SARGRTNSTSSKG+ P SSSNS PSPMSA QY MDLGFT             IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAI 97
           SPTESSTPPRPS NLI  SGGV+QMRPP +PSSNRESSTPP TYSQA+
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAV 108

[Close]

BLAST of IVF0000198 vs. NCBI nr
Match: KAA0067933.1 (hypothetical protein E6C27_scaffold138G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (537), Expect = 2.07e-68
Identity = 112/125 (89.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT            IG
Sbjct: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTTVTRSRSRSFDIKIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAICGKTRDQILFSK 113
           SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQA+CGKTRDQILFSK
Sbjct: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAVCGKTRDQILFSK 120

[Close]

BLAST of IVF0000198 vs. NCBI nr
Match: KAA0060855.1 (hypothetical protein E6C27_scaffold137G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 3.48e-43
Identity = 90/131 (68.70%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MSSEK S RGRTNSTSSKGN P SSSNSAPSPMSA+QYAMDLGF T            IG
Sbjct: 1   MSSEKGSVRGRTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFATVTRSRSRSSDIRIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAI------CGKTRD 113
           S TESST PRPS NLI    GVVQMRP   PSSNRESSTP   YSQA+      C KTRD
Sbjct: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPLTAYSQAVTPDKAVCAKTRD 120

[Close]

BLAST of IVF0000198 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 1.32e-41
Identity = 82/117 (70.09%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           MS EK +ARGRTNSTSSKGN P SSSNS PSPMSA+QYAMDLGFTT            IG
Sbjct: 1   MSLEKENARGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAICGKTRDQIL 105
           SPTESSTPP+PS NLI  SGGVVQMR PV+PSSNR+SSTPP TYSQA+    R ++L
Sbjct: 61  SPTESSTPPKPSTNLIRPSGGVVQMRSPVSPSSNRKSSTPPTTYSQAVTPDKRSKLL 117

[Close]

BLAST of IVF0000198 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 1.07e-40
Identity = 80/108 (74.07%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTTI------------G 60
           MSSEK SARGRTNSTSSKGN P SSSNSA SPM+++QYAMDL FTT+            G
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAI 96
           SPTESSTPPRP ANLI  SGGVVQMRPP +PSSNRESSTPP TYSQA+
Sbjct: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAV 108

[Close]

BLAST of IVF0000198 vs. NCBI nr
Match: KAA0026180.1 (hypothetical protein E6C27_scaffold19G001410 [Cucumis melo var. makuwa] >TYK30779.1 hypothetical protein E5676_scaffold343G001290 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 1.28e-40
Identity = 82/113 (72.57%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTT------------IG 60
           M+S+K S RGRTNSTSSKGN P SSSNS PSPMSANQYAMDLGFTT            IG
Sbjct: 1   MNSKKGSTRGRTNSTSSKGNLPSSSSNSTPSPMSANQYAMDLGFTTVTQSRSRSSDIQIG 60

Query: 61  SPTESSTPPRPSANLIHSSGGVVQMRPPVAPSSNRESSTPPITYSQAICGKTR 101
           S TESSTPPRP ANL H SGGVVQMRPP +PSSNRESSTPP TYSQA+    R
Sbjct: 61  SQTESSTPPRPWANLSHPSGGVVQMRPPTSPSSNRESSTPP-TYSQAVTSNKR 112

The following BLAST results are available for this feature:

BLAST of IVF0000198 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIK7	7.1e-51	89.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V4P4	9.7e-32	68.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TM80	2.8e-31	75.93	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7U8A0	6.3e-31	70.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCE6	5.3e-30	74.07	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of IVF0000198 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067933.1	2.07e-68	89.60	hypothetical protein E6C27_scaffold138G001030 [Cucumis melo var. makuwa]	[more]
KAA0060855.1	3.48e-43	68.70	hypothetical protein E6C27_scaffold137G00900 [Cucumis melo var. makuwa]	[more]
KAA0049709.1	1.32e-41	70.09	hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]	[more]
KAA0056175.1	1.07e-40	74.07	hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa]	[more]
KAA0026180.1	1.28e-40	72.57	hypothetical protein E6C27_scaffold19G001410 [Cucumis melo var. makuwa] >TYK3077...	[more]

BLAST of IVF0000198 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000198.1	IVF0000198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding