IVF0000196 (gene) Melon (IVF77) v1

Overview


Name	IVF0000196
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ferredoxin
Location	chr12: 11529333 .. 11529797 (+)
RNA-Seq Expression	IVF0000196
Synteny	IVF0000196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCATGTCAACTGCAAAGCTCCCTACCCACTTCATGTACAACACGCAATCTAAAAATCAACTTGGTAGCACCATCATCAAGTGTCCATCGTCAATTGGATCTACGAGAAACATTTGGAAATCCTTTGGCTTGAATTCACGTCCCTCATTCAGAGCCCGTGCAATGGCAGTTTTCAAAATTAAACTTGTCGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACGTACATTCTTGATGCAGCTGAAGAAGCGGGAGTAGACTTACCTTATTCTTGCAGGGCAGGTGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTCAATCAATCAGACGGGTCGTTCCTTGACGATGATCAAATGGCAAAGGGTTACTTGTTAACCTGTGTATCACTCCCAACTGCAGATTGTGTGATTCACACACACAAGGAAGAAGAACTGATCTGA

mRNA sequence

ATGTCAACCATGTCAACTGCAAAGCTCCCTACCCACTTCATGTACAACACGCAATCTAAAAATCAACTTGGTAGCACCATCATCAAGTGTCCATCGTCAATTGGATCTACGAGAAACATTTGGAAATCCTTTGGCTTGAATTCACGTCCCTCATTCAGAGCCCGTGCAATGGCAGTTTTCAAAATTAAACTTGTCGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACGTACATTCTTGATGCAGCTGAAGAAGCGGGAGTAGACTTACCTTATTCTTGCAGGGCAGGTGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTCAATCAATCAGACGGGTCGTTCCTTGACGATGATCAAATGGCAAAGGGTTACTTGTTAACCTGTGTATCACTCCCAACTGCAGATTGTGTGATTCACACACACAAGGAAGAAGAACTGATCTGA

Coding sequence (CDS)

ATGTCAACCATGTCAACTGCAAAGCTCCCTACCCACTTCATGTACAACACGCAATCTAAAAATCAACTTGGTAGCACCATCATCAAGTGTCCATCGTCAATTGGATCTACGAGAAACATTTGGAAATCCTTTGGCTTGAATTCACGTCCCTCATTCAGAGCCCGTGCAATGGCAGTTTTCAAAATTAAACTTGTCGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACGTACATTCTTGATGCAGCTGAAGAAGCGGGAGTAGACTTACCTTATTCTTGCAGGGCAGGTGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTCAATCAATCAGACGGGTCGTTCCTTGACGATGATCAAATGGCAAAGGGTTACTTGTTAACCTGTGTATCACTCCCAACTGCAGATTGTGTGATTCACACACACAAGGAAGAAGAACTGATCTGA

Protein sequence

MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI

Homology

[Close]

BLAST of IVF0000196 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-42
Identity = 84/132 (63.64%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 22  QLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHEFEASDDTY 81
           Q   T +K PSS+     + K   L +       AMAV+K+KLV P G+EHEF+A DD Y
Sbjct: 20  QASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAY 79

Query: 82  ILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLLTCVSLPTA 141
           ILDAAE AGV+LPYSCRAGACSTCAGKI SGSV+QSDGSFLDD Q  +GY+LTCVS P +
Sbjct: 80  ILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKS 139

Query: 142 DCVIHTHKEEEL 154
           DCVIHTHKE +L
Sbjct: 140 DCVIHTHKEGDL 151

[Close]

BLAST of IVF0000196 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-42
Identity = 89/154 (57.79%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 4   MSTAKLPTHFMYNTQSKNQLGSTIIKCPS---SIGSTRNIWKSFGLN-SRPSFRARAMAV 63
           M+T ++ +  M     ++Q  + +I   S   S+GST+ + +SFGL  S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 64  FKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDG 123
           +K+KL+ P G+E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG+IVSG+V+QSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 124 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEEL 154
           SFL+D  + KGY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of IVF0000196 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-38
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MST +  +LP      +       +      S  G  R   ++ G      F A A AV 
Sbjct: 1   MSTATAPRLPAPRSGASYHYQTTAAPAANTLSFAGHARQAARASGPRLSSRFVASAAAVL 60

Query: 61  -KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDG 120
            K+KLV P G EHEFEA DDTYIL+AAE AGV+LP+SCRAG+CSTCAG++ +G V+QS+G
Sbjct: 61  HKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEG 120

Query: 121 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEEL 154
           SFLDD QMA+GYLLTC+S P ADCVIHTHKEE+L
Sbjct: 121 SFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154

[Close]

BLAST of IVF0000196 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-36
Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 58  AVFKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQS 117
           AV+K+KL+ P G+E+EFE  DD +ILDAAEEAGVDLPYSCRAGACSTCAG+IV G V+QS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 118 DGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEEL 154
           +GSFL+DD   KG++LTCV+ P +DCVIHTHKE EL
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97

[Close]

BLAST of IVF0000196 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.5e-36
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 44  FGLNSRPS-FRARAMAVFKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGAC 103
           FGL S  S  R  AMA +K+ LV P GK+ E E  DD YILDAAEEAG+DLPYSCRAG+C
Sbjct: 37  FGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSC 96

Query: 104 STCAGKIVSGSVNQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEEL 154
           S+CAGK+ SGSVNQ DGSFLDDDQ+ +G++LTCV+ PT D  I THKEEEL
Sbjct: 97  SSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of IVF0000196 vs. ExPASy TrEMBL
Match: A0A5A7SWN7 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00770 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.6e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI
Sbjct: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of IVF0000196 vs. ExPASy TrEMBL
Match: A0A0A0LY90 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_1G163160 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNI KSFGLNSRPSFRA AMA F
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGKIVSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           FLDDDQMA GYLLTC+SLPTADCVIHTHKE ELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of IVF0000196 vs. ExPASy TrEMBL
Match: A0A5D3E4N5 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003470 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.7e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 14  MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE 73
           MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE
Sbjct: 1   MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE 60

Query: 74  FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL 133
           FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL
Sbjct: 61  FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL 120

Query: 134 TCVSLPTADCVIHTHKEEELI 155
           TCVSLPTADCVIHTHKEEELI
Sbjct: 121 TCVSLPTADCVIHTHKEEELI 141

[Close]

BLAST of IVF0000196 vs. ExPASy TrEMBL
Match: A0A6J1CLH4 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111012698 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.4e-65
Identity = 128/154 (83.12%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTA LP+ F  N   KN+   TIIKCPSSIGS  NI +SFGL S PSFR  AMAV+
Sbjct: 1   MSTMSTATLPSRFTLNAPCKNRYRITIIKCPSSIGSASNISRSFGLKSSPSFRTSAMAVY 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGK+VSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVSGSVDQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           FLDD QMA+GYLLTCVSLPTADCVIHTHKE ELI
Sbjct: 121 FLDDTQMAEGYLLTCVSLPTADCVIHTHKEGELI 154

[Close]

BLAST of IVF0000196 vs. ExPASy TrEMBL
Match: A0A6J1FZ83 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 126/156 (80.77%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQS--KNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMA 60
           MSTMSTAKLP+  M+NT +  KNQ  STIIKCPSSIGST NI KSFGL S PS R  AMA
Sbjct: 64  MSTMSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAMA 123

Query: 61  VFKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSD 120
           V+KIKL+EPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK VSGSV+QSD
Sbjct: 124 VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 183

Query: 121 GSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           GSFLDD QM +GYLLTC+S PT+DCVI THKE ELI
Sbjct: 184 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 219

[Close]

BLAST of IVF0000196 vs. NCBI nr
Match: KAA0035450.1 (ferredoxin, root R-B1-like [Cucumis melo var. makuwa])

HSP 1 Score: 312 bits (799), Expect = 3.26e-107
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154
           FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI
Sbjct: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of IVF0000196 vs. NCBI nr
Match: KGN64931.1 (hypothetical protein Csa_022774 [Cucumis sativus])

HSP 1 Score: 295 bits (755), Expect = 1.68e-100
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNI KSFGLNSRPSFRA AMA F
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGKIVSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154
           FLDDDQMA GYLLTC+SLPTADCVIHTHKE ELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of IVF0000196 vs. NCBI nr
Match: TYK31073.1 (ferredoxin, root R-B2 [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (736), Expect = 8.49e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 14  MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE 73
           MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE
Sbjct: 1   MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE 60

Query: 74  FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL 133
           FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL
Sbjct: 61  FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL 120

Query: 134 TCVSLPTADCVIHTHKEEELI 154
           TCVSLPTADCVIHTHKEEELI
Sbjct: 121 TCVSLPTADCVIHTHKEEELI 141

[Close]

BLAST of IVF0000196 vs. NCBI nr
Match: XP_038893731.1 (ferredoxin, root R-B2 [Benincasa hispida] >XP_038893732.1 ferredoxin, root R-B2 [Benincasa hispida])

HSP 1 Score: 258 bits (659), Expect = 7.26e-86
Identity = 130/154 (84.42%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTAKL THFMYN   KN+L STIIKCPSSI S  NI K FGL SRPSFRA AMAV+
Sbjct: 1   MSTMSTAKLSTHFMYNAPCKNRLRSTIIKCPSSISSMSNISKFFGLKSRPSFRACAMAVY 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEP G EHEFEASDD YILDAAEEAG+DLPYSCRAGACSTCAGK+VSGSV+QSDGS
Sbjct: 61  KIKLVEPSGTEHEFEASDDAYILDAAEEAGIDLPYSCRAGACSTCAGKMVSGSVDQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154
           FLDD QMA+GYLLTCVSLPTADCVIHTHKE EL+
Sbjct: 121 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELL 154

[Close]

BLAST of IVF0000196 vs. NCBI nr
Match: XP_022142635.1 (ferredoxin, root R-B2 [Momordica charantia])

HSP 1 Score: 255 bits (651), Expect = 1.20e-84
Identity = 128/154 (83.12%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60
           MSTMSTA LP+ F  N   KN+   TIIKCPSSIGS  NI +SFGL S PSFR  AMAV+
Sbjct: 1   MSTMSTATLPSRFTLNAPCKNRYRITIIKCPSSIGSASNISRSFGLKSSPSFRTSAMAVY 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGK+VSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVSGSVDQSDGS 120

Query: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154
           FLDD QMA+GYLLTCVSLPTADCVIHTHKE ELI
Sbjct: 121 FLDDTQMAEGYLLTCVSLPTADCVIHTHKEGELI 154

[Close]

BLAST of IVF0000196 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-43
Identity = 89/154 (57.79%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 4   MSTAKLPTHFMYNTQSKNQLGSTIIKCPS---SIGSTRNIWKSFGLN-SRPSFRARAMAV 63
           M+T ++ +  M     ++Q  + +I   S   S+GST+ + +SFGL  S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 64  FKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDG 123
           +K+KL+ P G+E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG+IVSG+V+QSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 124 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEEL 154
           SFL+D  + KGY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of IVF0000196 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-35
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 2   STMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPS--FRARAMAV 61
           + +S+A + T F+   Q+   L S          +T+++   FGL S  +   R  AMA 
Sbjct: 4   TALSSAIVSTSFLRRQQTPISLRSL------PFANTQSL---FGLKSSTARGGRVTAMAT 63

Query: 62  FKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDG 121
           +K+K + P G E E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGS++QSD 
Sbjct: 64  YKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ 123

Query: 122 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           SFLDD+QM++GY+LTCV+ PT+D VI THKEE ++
Sbjct: 124 SFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of IVF0000196 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-34
Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 23  LGSTIIK---CPSSIGS--TRNIWKSFGLNSRPS--FRARAMAVFKIKLVEPCGKEHEFE 82
           +G++ I+    P S+ S  + N    FGL S  +   R  AMA +K+K + P G E E E
Sbjct: 11  VGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG-ELEVE 70

Query: 83  ASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLLTC 142
             DD Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSV+QSD SFLDD+Q+ +G++LTC
Sbjct: 71  CDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTC 130

Query: 143 VSLPTADCVIHTHKEEELI 155
            + PT+D  I THKEE+++
Sbjct: 131 AAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of IVF0000196 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 131.0 bits (328), Expect = 8.5e-31
Identity = 61/113 (53.98%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 44  FGL-NSRPSF-RARAMAVFKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGA 103
           FGL +SR +F +  A    K+KL+ P G+E E E ++D  IL++AE AG++LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 104 CSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           C TC GK+VSG V+QS GSFL+++Q+ KGY+LTC++LP  DCV++THK+ +LI
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDLI 148

[Close]

BLAST of IVF0000196 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 57/150 (38.00%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 5   STAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKL 64
           ST  LP  ++ N+ S     +T+        ST    ++F    R   RA     +K+ +
Sbjct: 11  STISLPKPYLSNSFSFPLRNATL--------STTTNRRNFLTTGRIIARA-----YKV-V 70

Query: 65  VEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDD 124
           VE  GK  E E   D  IL  A ++G+D+PY C  G C TC  K+V+G+V+QS G  L D
Sbjct: 71  VEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSD 130

Query: 125 DQMAKGYLLTCVSLPTADCVIHTHKEEELI 155
           D + +GY L C S PT+DC I    EEEL+
Sbjct: 131 DVVERGYTLLCASYPTSDCHIKMIPEEELL 145

The following BLAST results are available for this feature:

BLAST of IVF0000196 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	3.6e-42	63.64	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	4.7e-42	57.79	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P94044	4.1e-38	54.55	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]
P14937	2.2e-36	71.88	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
O04683	6.5e-36	67.57	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]

BLAST of IVF0000196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWN7	1.6e-82	100.00	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00770 PE=...	[more]
A0A0A0LY90	2.1e-77	94.81	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_1G163160 PE=3 SV=1	[more]
A0A5D3E4N5	5.7e-75	100.00	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003470 PE...	[more]
A0A6J1CLH4	2.4e-65	83.12	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111012698 PE=3 SV=1	[more]
A0A6J1FZ83	2.2e-63	80.77	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1	[more]

BLAST of IVF0000196 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035450.1	3.26e-107	100.00	ferredoxin, root R-B1-like [Cucumis melo var. makuwa]	[more]
KGN64931.1	1.68e-100	94.81	hypothetical protein Csa_022774 [Cucumis sativus]	[more]
TYK31073.1	8.49e-98	100.00	ferredoxin, root R-B2 [Cucumis melo var. makuwa]	[more]
XP_038893731.1	7.26e-86	84.42	ferredoxin, root R-B2 [Benincasa hispida] >XP_038893732.1 ferredoxin, root R-B2 ...	[more]
XP_022142635.1	1.20e-84	83.12	ferredoxin, root R-B2 [Momordica charantia]	[more]

BLAST of IVF0000196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	3.3e-43	57.79	ferredoxin 3	[more]
AT1G10960.1	1.9e-35	50.32	ferredoxin 1	[more]
AT1G60950.1	1.3e-34	53.24	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	8.5e-31	53.98	ferredoxin 4	[more]
AT4G14890.1	1.1e-17	38.00	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..154
None	No IPR available	PANTHER	PTHR43112:SF30	FERREDOXIN-3, CHLOROPLASTIC	coord: 4..153
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 4..153
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 66..140 e-value: 5.2E-22 score: 77.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 60..151 score: 12.767323
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 65..146 e-value: 1.90662E-33 score: 111.333
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 57..154 e-value: 2.4E-34 score: 119.1
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 59..154 e-value: 8.0E-47 score: 155.0
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 97..105
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 49..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000196.2	IVF0000196.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding