IVF0000087 (gene) Melon (IVF77) v1

Overview


Name	IVF0000087
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	transcription factor TCP5
Location	chr12: 25045816 .. 25046357 (-)
RNA-Seq Expression	IVF0000087
Synteny	IVF0000087

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGA

mRNA sequence

ATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTGGAGGTAAAGATAGGCACAGCAAAAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGA

Coding sequence (CDS)

ATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTGGAGGTAAAGATAGGCACAGCAAAAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGA

Protein sequence

MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFLEVKIGTAKRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF

Homology

[Close]

BLAST of IVF0000087 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.5e-17
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 17  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTA-----KRIRLSIPTAIQ 76
           ++ ++  + + SRQ      NPRI RVS          K+ T      +RIRLS+PTAIQ
Sbjct: 31  LQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQ 90

Query: 77  LYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFD 108
           LYDLQ++LGLSQPSKVIDWL++  + ++DKLPPL FP  F+
Sbjct: 91  LYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of IVF0000087 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 37  NPRIFRVSPFL-----EVKIGTA-----KRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWL 96
           NPRI RVS          K+ T      +RIRLS+ TAIQ+YDLQ +LGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 97  IDVTRFEIDKLPPLHFPKDF---DPNASILHHS 117
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of IVF0000087 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-14
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 4   KLKEDGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFLEVKIGTAK--- 63
           ++KED    E +   G    K++     S    +++  +PRI RVS     K   +K   
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  -------RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDP 116
                  R+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPL    +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

[Close]

BLAST of IVF0000087 vs. ExPASy Swiss-Prot
Match: A2XMN1 (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-10
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 50  KIGTAK-----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPK 109
           K+ TAK     R+RLS+ TAIQ YDLQ++LG  QPSK I+WLI+     ID LP L    
Sbjct: 58  KVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSL---- 117

Query: 110 DFDPNASILHHSDIGGDAALMKAKNEETDQTL 137
             DP A          DAA  + ++++  Q L
Sbjct: 118 --DPAAFAAIPHAAAADAAPTRRRSQQQQQQL 143

[Close]

BLAST of IVF0000087 vs. ExPASy Swiss-Prot
Match: Q10CE8 (Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 50  KIGTAK-----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPK 109
           K+ TAK     R+RLS+ TAIQ YDLQ++LG  QPSK I+WLI+     ID LP L  P 
Sbjct: 58  KVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLD-PA 117

Query: 110 DFDPNASILHHSDIGGDAALMKAKNEETDQTL 137
            F   A+I H      DAA  + ++++  Q L
Sbjct: 118 AF---AAIPH---AAADAAPTRRRSQQQQQQL 142

[Close]

BLAST of IVF0000087 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 164/180 (91.11%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPF        K+ T K
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 171
           SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180

[Close]

BLAST of IVF0000087 vs. ExPASy TrEMBL
Match: A0A1S3BEN2 (transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 164/180 (91.11%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPF        K+ T K
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 171
           SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180

[Close]

BLAST of IVF0000087 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 150/181 (82.87%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPF        K+ T K
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFM-YQTNSSPFS 171
           SILHHSDI GDAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDI-GDAA-FKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 179

[Close]

BLAST of IVF0000087 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.4e-52
Identity = 123/195 (63.08%), Postives = 135/195 (69.23%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP         K+ T K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 170
           S LHH DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFLHHFDIADAAA--KAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of IVF0000087 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 121/195 (62.05%), Postives = 132/195 (67.69%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MIS+LK +G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP         K+ T K
Sbjct: 8   MISRLKPEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTR +IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRVDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 170
           S L H DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFL-HLDIADAAA--KAKHEETGMLLLQKLSPSPNNASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of IVF0000087 vs. NCBI nr
Match: XP_008445912.1 (PREDICTED: transcription factor TCP5 [Cucumis melo] >TYJ98944.1 transcription factor TCP5 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (813), Expect = 1.14e-108
Identity = 164/180 (91.11%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPF        K+ T K
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 170
           SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180

[Close]

BLAST of IVF0000087 vs. NCBI nr
Match: XP_011660343.1 (transcription factor TCP5 [Cucumis sativus] >KGN64062.1 hypothetical protein Csa_014153 [Cucumis sativus])

HSP 1 Score: 273 bits (697), Expect = 5.24e-91
Identity = 150/181 (82.87%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPF        K+ T K
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMY-QTNSSPFS 170
           SILHHSDIG DAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDIG-DAAF-KAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 179

[Close]

BLAST of IVF0000087 vs. NCBI nr
Match: XP_038895251.1 (transcription factor PCF6 [Benincasa hispida])

HSP 1 Score: 212 bits (539), Expect = 1.56e-66
Identity = 127/200 (63.50%), Postives = 137/200 (68.50%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKL ++G HDEAKQMEGKRKKA        FLRGNPRI RVS          K+ T K
Sbjct: 1   MISKLTKEGVHDEAKQMEGKRKKA--------FLRGNPRILRVSSLFGGKDRHSKVCTVK 60

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLS+PTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIG---------GDAALMKAKNEETDQTLL-----------VQTNDINGDSSHF 170
           SILHHS +           DAA+  AKNEETDQ LL           VQTN I  +  HF
Sbjct: 121 SILHHSSLFLPQIPHFDIADAAVT-AKNEETDQRLLLHKLSSLSALQVQTNAIKENCCHF 180

[Close]

BLAST of IVF0000087 vs. NCBI nr
Match: XP_023001048.1 (transcription factor TCP13-like [Cucurbita maxima])

HSP 1 Score: 211 bits (538), Expect = 3.58e-66
Identity = 123/195 (63.08%), Postives = 135/195 (69.23%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP         K+ T K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKG--PSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 169
           S LHH DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFLHHFDIADAAA--KAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of IVF0000087 vs. NCBI nr
Match: XP_023519980.1 (transcription factor TCP13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (538), Expect = 3.58e-66
Identity = 123/195 (63.08%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTAK 60
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP         K+ T K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKG--PSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  -----RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
                RIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 169
           S LHH DI    A  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFLHHLDIAD--ATAKAKHEETGMLLLQKLSPSPNHASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of IVF0000087 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 17  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFL-----EVKIGTA-----KRIRLSIPTAIQ 76
           ++ ++  + + SRQ      NPRI RVS          K+ T      +RIRLS+PTAIQ
Sbjct: 31  LQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQ 90

Query: 77  LYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFD 108
           LYDLQ++LGLSQPSKVIDWL++  + ++DKLPPL FP  F+
Sbjct: 91  LYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of IVF0000087 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 37  NPRIFRVSPFL-----EVKIGTA-----KRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWL 96
           NPRI RVS          K+ T      +RIRLS+ TAIQ+YDLQ +LGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 97  IDVTRFEIDKLPPLHFPKDF---DPNASILHHS 117
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of IVF0000087 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-15
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 4   KLKEDGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFLEVKIGTAK--- 63
           ++KED    E +   G    K++     S    +++  +PRI RVS     K   +K   
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  -------RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDP 116
                  R+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPL    +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

[Close]

BLAST of IVF0000087 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-15
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 4   KLKEDGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFLEVKIGTAK--- 63
           ++KED    E +   G    K++     S    +++  +PRI RVS     K   +K   
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  -------RIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDP 116
                  R+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPL    +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

[Close]

BLAST of IVF0000087 vs. TAIR 10
Match: AT4G18390.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 )

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 42  RVSPFLEVKIGTAKRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL- 101
           R S  L  K    +R+RLS+ TA+Q YDLQ++LG  QPSK ++WLI      I +LP L 
Sbjct: 45  RHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLN 104

Query: 102 --HFPKD 106
             HFP D
Sbjct: 105 NTHFPTD 111

The following BLAST results are available for this feature:

BLAST of IVF0000087 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME3	7.5e-17	48.51	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	3.1e-15	51.61	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q9S7W5	5.9e-14	39.37	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
A2XMN1	8.9e-10	42.39	Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV...	[more]
Q10CE8	1.2e-09	44.57	Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 ...	[more]

BLAST of IVF0000087 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIQ9	4.3e-84	91.11	Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BEN2	4.3e-84	91.11	transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1	[more]
A0A0A0LTI3	1.2e-70	82.87	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV...	[more]
A0A6J1KPD9	4.4e-52	63.08	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4...	[more]
A0A6J1E7C6	1.3e-48	62.05	transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=...	[more]

BLAST of IVF0000087 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445912.1	1.14e-108	91.11	PREDICTED: transcription factor TCP5 [Cucumis melo] >TYJ98944.1 transcription fa...	[more]
XP_011660343.1	5.24e-91	82.87	transcription factor TCP5 [Cucumis sativus] >KGN64062.1 hypothetical protein Csa...	[more]
XP_038895251.1	1.56e-66	63.50	transcription factor PCF6 [Benincasa hispida]	[more]
XP_023001048.1	3.58e-66	63.08	transcription factor TCP13-like [Cucurbita maxima]	[more]
XP_023519980.1	3.58e-66	63.08	transcription factor TCP13-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0000087 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60970.1	5.3e-18	48.51	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	2.2e-16	51.61	TCP domain protein 17	[more]
AT3G02150.1	4.2e-15	39.37	plastid transcription factor 1	[more]
AT3G02150.2	4.2e-15	39.37	plastid transcription factor 1	[more]
AT4G18390.1	2.4e-10	47.76	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 50..117 e-value: 1.1E-11 score: 45.6
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 39..97 score: 12.174095
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR31072:SF154	TCP FAMILY TRANSCRIPTION FACTOR	coord: 6..114
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 6..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000087.2	IVF0000087.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding