IVF0000086 (gene) Melon (IVF77) v1

Overview


Name	IVF0000086
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	chr04: 13264224 .. 13265802 (-)
RNA-Seq Expression	IVF0000086
Synteny	IVF0000086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAATCTACAACCAAAAAAAAAAAAAAAATCTCTCCTTTTTCATCTCCATCTACATTTAAAAAAAAAAAAAACATTCAAAATCCCACCACCATAAAGAAAGTCCAAGAAAGACAACAGCTTTCTTGTGTAGTCTTCTCAGATCTTGCTCCTTATCTCATCAAAAATCCATCTCTTTATTTACCCTTTTTTTATATAAAAAAACATCTTCTTGTTTGGTTACAATCCCAATATCATACAGGCCTATAAGAAGGAGGAGAAGAAAAAAATAAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACCCTAGAAGAATCTTTGAGGTGAGCTTTTTTATGGCAAAAACCTAAAATGTTATGAGAAAGTATAAGCTAAATTTTTACACAATATTGGTAAATTAACAATTGGGATTTACTTTCTTTCTTTCTTTCTTTCTTTCTAATTTCTCTATTCTATTGAATGGTTGAAAATCAAACACAGCAAGCAACAGTCTTCTCTTGGAAAAAAAAATCCAAAAAAGAGAGAAAAAATTAGGGATGGACTTCTCAAGTAGTAGCAGCCATAATATCATCATCAACCACAATAACAACACCATCAACCACCAACAACCTGCACCAACCTCCTCTTCAAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCACGTTGTAGCGGAGCTCATGTTCTTGAATTCCTCAGGTATCGAACAAAGATGTTTCTTTTAGATAATATAATAAATTTGTTGTCTCTCTCTGGTAGACGTAACTAACACAGTTAGTAAACCACCTGATTTTCTGCTTTGATAGGTATCTAGACCAATTTGGAAAGACGAAAGTGCACACGGCTATTTGCCCTTTCTACGGACTGCCGAACCCTCCAGCACCGTGCCCGTGCCCTCTTCGGCAGGCATGGGGAAGCCTCGACGCGTTGGTTGGACGGCTTCGAGCAGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCAGTGAGATTGTATCTACGTGAGGTTCGTGATTTACAATCAAAGGCTAGAGGAATTAGCTATGAGAAGAAAAGAAAACGCCCACCTGCTCAATTGCCTTTAACTCAACAAACAACTCATGGTGCATCTTCATGATAAAAAAGGTGCAAATTTTCAGAAAAGGAAAGAAATTCCTTAATTGGGTATTGCTCTAAACCTAATTTAAAAACATGGGTTTTGTTAAAATATTAATTTTTATAAGTTTTTTTTTCTTGAAAAAAAATTTCTTGAATAAGTTTAAGAGTTTTCACTCTCTCTACTACTTCTGCTAGGGTTTGGAAAATTTGAAGCATTTTTATTTAATTTTTGCTTTGATGAATAAATTTTTTTTTTCTGAAAAAGTTTCTAAGACTGTGTAAAGGTGCAGATCTCTGCTTTTGATGCAAATACTAGCAGTGTTACTATTTGTAAATTTGTACTCTCTAGTAATATTCATGTAATATGCTTATTGAACACCGTGG

mRNA sequence

CACAAATCTACAACCAAAAAAAAAAAAAAAATCTCTCCTTTTTCATCTCCATCTACATTTAAAAAAAAAAAAAACATTCAAAATCCCACCACCATAAAGAAAGTCCAAGAAAGACAACAGCTTTCTTGTGTAGTCTTCTCAGATCTTGCTCCTTATCTCATCAAAAATCCATCTCTTTATTTACCCTTTTTTTATATAAAAAAACATCTTCTTGTTTGGTTACAATCCCAATATCATACAGGCCTATAAGAAGGAGGAGAAGAAAAAAATAAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACCCTAGAAGAATCTTTGAGCAAGCAACAGTCTTCTCTTGGAAAAAAAAATCCAAAAAAGAGAGAAAAAATTAGGGATGGACTTCTCAAGTAGTAGCAGCCATAATATCATCATCAACCACAATAACAACACCATCAACCACCAACAACCTGCACCAACCTCCTCTTCAAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCACGTTGTAGCGGAGCTCATGTTCTTGAATTCCTCAGGTATCTAGACCAATTTGGAAAGACGAAAGTGCACACGGCTATTTGCCCTTTCTACGGACTGCCGAACCCTCCAGCACCGTGCCCGTGCCCTCTTCGGCAGGCATGGGGAAGCCTCGACGCGTTGGTTGGACGGCTTCGAGCAGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCAGTGAGATTGTATCTACGTGAGGTTCGTGATTTACAATCAAAGGCTAGAGGAATTAGCTATGAGAAGAAAAGAAAACGCCCACCTGCTCAATTGCCTTTAACTCAACAAACAACTCATGGTGCATCTTCATGATAAAAAAGGTGCAAATTTTCAGAAAAGGAAAGAAATTCCTTAATTGGGTATTGCTCTAAACCTAATTTAAAAACATGGGTTTTGTTAAAATATTAATTTTTATAAGTTTTTTTTTCTTGAAAAAAAATTTCTTGAATAAGTTTAAGAGTTTTCACTCTCTCTACTACTTCTGCTAGGGTTTGGAAAATTTGAAGCATTTTTATTTAATTTTTGCTTTGATGAATAAATTTTTTTTTTCTGAAAAAGTTTCTAAGACTGTGTAAAGGTGCAGATCTCTGCTTTTGATGCAAATACTAGCAGTGTTACTATTTGTAAATTTGTACTCTCTAGTAATATTCATGTAATATGCTTATTGAACACCGTGG

Coding sequence (CDS)

ATGGACTTCTCAAGTAGTAGCAGCCATAATATCATCATCAACCACAATAACAACACCATCAACCACCAACAACCTGCACCAACCTCCTCTTCAAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCACGTTGTAGCGGAGCTCATGTTCTTGAATTCCTCAGGTATCTAGACCAATTTGGAAAGACGAAAGTGCACACGGCTATTTGCCCTTTCTACGGACTGCCGAACCCTCCAGCACCGTGCCCGTGCCCTCTTCGGCAGGCATGGGGAAGCCTCGACGCGTTGGTTGGACGGCTTCGAGCAGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCAGTGAGATTGTATCTACGTGAGGTTCGTGATTTACAATCAAAGGCTAGAGGAATTAGCTATGAGAAGAAAAGAAAACGCCCACCTGCTCAATTGCCTTTAACTCAACAAACAACTCATGGTGCATCTTCATGA

Protein sequence

MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS

Homology

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BLAST of IVF0000086 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.0e-69
Identity = 132/179 (73.74%), Postives = 146/179 (81.56%), Query Frame = 0


Query: 10  NIIINHNNNTI-----NHQQPAPTSSS----SSRYENQKRRDWKTFGQYLNNHRPPLALS 69
           NII N++++          QP  +SSS    SSRYENQKRRDW TFGQYL NHRPPL+LS
Sbjct: 21  NIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLS 80

Query: 70  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 129
           RCSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA
Sbjct: 81  RCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 140

Query: 130 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180
           FEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  ++  AS
Sbjct: 141 FEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVAS 199

[Close]

BLAST of IVF0000086 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 9.9e-68
Identity = 129/175 (73.71%), Postives = 139/175 (79.43%), Query Frame = 0


Query: 13  INHNNNTINHQQPAPTSSSS--------------SRYENQKRRDWKTFGQYLNNHRPPLA 72
           ++HN N +       T++SS              SRYENQKRRDW TFGQYL NHRPPL+
Sbjct: 13  MSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLS 72

Query: 73  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 132
           LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLR
Sbjct: 73  LSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLR 132

Query: 133 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPAQLPLTQ 173
           AAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 133 AAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of IVF0000086 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 117/144 (81.25%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 25  PAPTSSSS--SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKV 84
           P+P+SSS   SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKV
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 85  HTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYL 144
           HT +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 145 REVRDLQSKARGISYEKKRKRPPA 167
           REVR+ Q++ARGISYEKK+++ P+
Sbjct: 189 REVRETQARARGISYEKKKRKKPS 212

[Close]

BLAST of IVF0000086 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 117/144 (81.25%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 25  PAPTSSSS--SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKV 84
           P+P+SSS   SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKV
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 85  HTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYL 144
           HT +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 145 REVRDLQSKARGISYEKKRKRPPA 167
           REVR+ Q++ARGISYEKK+++ P+
Sbjct: 189 REVRETQARARGISYEKKKRKKPS 212

[Close]

BLAST of IVF0000086 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.4e-66
Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 33  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 92
           SRYE+QKRRDW TFGQYL NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH A CPF+G 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 93  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA 152
           P+PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 153 RGISYEKK-RKRPPAQLPLTQQTTHGASS 181
           RGI+YEKK RKRPP     +Q     A++
Sbjct: 141 RGIAYEKKRRKRPPTSSSSSQAAAAAAAA 169

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BLAST of IVF0000086 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180

[Close]

BLAST of IVF0000086 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180

[Close]

BLAST of IVF0000086 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.5e-98
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFSS SSHNIIIN+NNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQTTHGASS
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 180

[Close]

BLAST of IVF0000086 vs. ExPASy TrEMBL
Match: A0A6J1DS94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 GN=LOC111022718 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84
Identity = 160/179 (89.39%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSSSS  N++   NNN  NH Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MEFSSSSGSNMM---NNN--NHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPL QQT HGA+
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHGAA 174

[Close]

BLAST of IVF0000086 vs. ExPASy TrEMBL
Match: A0A6J1ETL1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437437 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.1e-83
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MDFSSSSSHNIII----NHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFS SSS++I+I    N+NNN +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 171
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPP+Q PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174

[Close]

BLAST of IVF0000086 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK20560.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 368 bits (945), Expect = 1.27e-128
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180

[Close]

BLAST of IVF0000086 vs. NCBI nr
Match: XP_004152053.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_011754 [Cucumis sativus])

HSP 1 Score: 363 bits (931), Expect = 1.74e-126
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFSS SSHNIIIN+NNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQTTHGASS
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 180

[Close]

BLAST of IVF0000086 vs. NCBI nr
Match: XP_038888358.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038888359.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 338 bits (866), Expect = 1.58e-116
Identity = 170/183 (92.90%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINH--QQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60
           MDFSSSSSHNIIIN+NNN+INH  QQ A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLA
Sbjct: 1   MDFSSSSSHNIIINNNNNSINHHQQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60

Query: 61  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120
           LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR
Sbjct: 61  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120

Query: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPA-QLPLTQQTTHG 180
           AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+ QLPLT  T+HG
Sbjct: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSSQLPLTHHTSHG 180

[Close]

BLAST of IVF0000086 vs. NCBI nr
Match: KAG7036313.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (820), Expect = 1.36e-109
Identity = 156/170 (91.76%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS SSS++IIIN+NNN +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSGSSSNSIIINNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPP+Q PL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 170

[Close]

BLAST of IVF0000086 vs. NCBI nr
Match: XP_022155631.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155633.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia])

HSP 1 Score: 317 bits (813), Expect = 1.38e-108
Identity = 160/179 (89.39%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           M+FSSSS  N++   NNN  NH Q A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MEFSSSSGSNMM---NNN--NHLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 179
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPL QQT HGA+
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHGAA 174

[Close]

BLAST of IVF0000086 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-70
Identity = 132/179 (73.74%), Postives = 146/179 (81.56%), Query Frame = 0


Query: 10  NIIINHNNNTI-----NHQQPAPTSSS----SSRYENQKRRDWKTFGQYLNNHRPPLALS 69
           NII N++++          QP  +SSS    SSRYENQKRRDW TFGQYL NHRPPL+LS
Sbjct: 21  NIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLS 80

Query: 70  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 129
           RCSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA
Sbjct: 81  RCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 140

Query: 130 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180
           FEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  ++  AS
Sbjct: 141 FEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVAS 199

[Close]

BLAST of IVF0000086 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 257.7 bits (657), Expect = 7.0e-69
Identity = 129/175 (73.71%), Postives = 139/175 (79.43%), Query Frame = 0


Query: 13  INHNNNTINHQQPAPTSSSS--------------SRYENQKRRDWKTFGQYLNNHRPPLA 72
           ++HN N +       T++SS              SRYENQKRRDW TFGQYL NHRPPL+
Sbjct: 13  MSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLS 72

Query: 73  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 132
           LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLR
Sbjct: 73  LSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLR 132

Query: 133 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPAQLPLTQ 173
           AAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 133 AAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of IVF0000086 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-67
Identity = 122/161 (75.78%), Postives = 133/161 (82.61%), Query Frame = 0


Query: 12  IINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL 71
           +I+H  N   +     T  SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVLEFL
Sbjct: 3   LISHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFL 62

Query: 72  RYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEAN 131
           RYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEAN
Sbjct: 63  RYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEAN 122

Query: 132 PFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQ 173
           PFG+RAVRL+LREVRD Q+KARG+SYEKKRKR   Q P TQ
Sbjct: 123 PFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]

BLAST of IVF0000086 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-64
Identity = 124/181 (68.51%), Postives = 143/181 (79.01%), Query Frame = 0


Query: 6   SSSHNIIINHNNNT-INHQQPAPTSS--SSSRYENQKRRDWKTFGQYLNNHRPPLALSRC 65
           S +HN   N N NT ++ Q P+  SS  SSSRYENQKRRDW TF QYL NH PPL+L+ C
Sbjct: 5   SQNHN---NRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASC 64

Query: 66  SGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFE 125
           SGAHVL+FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+E
Sbjct: 65  SGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 124

Query: 126 ENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR----------PPAQLPLTQ 174
           ENGG PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR          P +Q PL Q
Sbjct: 125 ENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQ 182

[Close]

BLAST of IVF0000086 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 230.7 bits (587), Expect = 9.2e-61
Identity = 109/155 (70.32%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 17  NNTINHQQPAPTSSSS-----SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL 76
           ++ +    P P+  SS     SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL
Sbjct: 9   SDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFL 68

Query: 77  RYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEAN 136
           +YLDQFGKTKVH A CP++G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++N
Sbjct: 69  KYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSN 128

Query: 137 PFGARAVRLYLREVRDLQSKARGISYE-KKRKRPP 166
           PF ARAVR+YLREVR+ Q+KARGI YE KKRKRPP
Sbjct: 129 PFAARAVRIYLREVRESQAKARGIPYEKKKRKRPP 163

The following BLAST results are available for this feature:

BLAST of IVF0000086 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	4.0e-69	73.74	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	9.9e-68	73.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	1.3e-67	81.25	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	1.3e-67	81.25	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2YG32	2.4e-66	81.21	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of IVF0000086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAV8	2.3e-99	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	2.3e-99	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L7E1	9.5e-98	98.33	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A6J1DS94	4.6e-84	89.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1ETL1	5.1e-83	89.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of IVF0000086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447415.1	1.27e-128	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_004152053.1	1.74e-126	98.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothe...	[more]
XP_038888358.1	1.58e-116	92.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888835...	[more]
KAG7036313.1	1.36e-109	91.76	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022155631.1	1.38e-108	89.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155...	[more]

BLAST of IVF0000086 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	2.8e-70	73.74	Protein of unknown function (DUF640)	[more]
AT3G23290.2	7.0e-69	73.71	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.3e-67	75.78	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.3e-64	68.51	Protein of unknown function (DUF640)	[more]
AT1G07090.1	9.2e-61	70.32	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 25..147 e-value: 4.9E-65 score: 217.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..161 score: 82.885216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..180
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 17..175
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 17..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000086.1	IVF0000086.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus