IVF0000020 (gene) Melon (IVF77) v1

Overview
NameIVF0000020
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionArmadillo-like helical
Locationchr01: 29366690 .. 29366908 (+)
RNA-Seq ExpressionIVF0000020
SyntenyIVF0000020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCAGGTAACATGGCTTTTTGCAATATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATAATCAGAACAACCATGAGTATATAA

mRNA sequence

ATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCAGGTAACATGGCTTTTTGCAATATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATAATCAGAACAACCATGAGTATATAA

Coding sequence (CDS)

ATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCAGGTAACATGGCTTTTTGCAATATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATAATCAGAACAACCATGAGTATATAA

Protein sequence

MDCIMFVNGRMKMDEGANKRIKIPYQVTWLFAISRLKKLASTTTTQVKKAEDSSNNSSERNGNIIIRTTMSI
Homology
BLAST of IVF0000020 vs. ExPASy TrEMBL
Match: A0A5D3C0T4 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00490 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 65/82 (79.27%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 1  MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
          MD IMFVNGRMKMDEGANKRIKI Y          + TWLFA SRLKKLASTTTTQVKKA
Sbjct: 10 MDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLASTTTTQVKKA 69

Query: 61 EDSSNNSSERNGNIIIRTTMSI 73
          EDSSNNSSERNGNI+IRTTM+I
Sbjct: 70 EDSSNNSSERNGNIMIRTTMTI 91

BLAST of IVF0000020 vs. ExPASy TrEMBL
Match: A0A5A7V5F7 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00720 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 63/82 (76.83%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKMDEGANKRIKIPY          + TWLFA +RLKK+AS TTTQVKKA
Sbjct: 506 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS-TTTQVKKA 565

Query: 61  EDSSNNSSERNGNIIIRTTMSI 73
           EDSSNNSSERNGNI+IRTTM+I
Sbjct: 566 EDSSNNSSERNGNIMIRTTMTI 586

BLAST of IVF0000020 vs. ExPASy TrEMBL
Match: A0A1S3BA59 (uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 63/82 (76.83%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKMDEGANKRIKIPY          + TWLFA +RLKK+AS TTTQVKKA
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS-TTTQVKKA 582

Query: 61  EDSSNNSSERNGNIIIRTTMSI 73
           EDSSNNSSERNGNI+IRTTM+I
Sbjct: 583 EDSSNNSSERNGNIMIRTTMTI 603

BLAST of IVF0000020 vs. ExPASy TrEMBL
Match: A0A0A0LL28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKMDEGANKRIKIPY          + TWLFA +RLKKLAS TTTQVKKA
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKLAS-TTTQVKKA 582

Query: 61  EDSSNNSSERNGNIIIRTTMSI 73
           EDSSNNSSERNGN +IRTTM+I
Sbjct: 583 EDSSNNSSERNGNTMIRTTMTI 603

BLAST of IVF0000020 vs. ExPASy TrEMBL
Match: A0A6J1BPK8 (uncharacterized protein LOC111004666 OS=Momordica charantia OX=3673 GN=LOC111004666 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPYQV----------TWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKM E  +KRIKIPY            TWLFA +RLKKLAS    +V+KA
Sbjct: 502 MDCIMFVNGGMKMAED-HKRIKIPYHAARMISKQMDGTWLFASARLKKLAS---VKVEKA 561

Query: 61  EDSSNNSSERNGNIIIRT 69
           EDSSNNS ER+G +++RT
Sbjct: 562 EDSSNNSHERHG-MLMRT 574

BLAST of IVF0000020 vs. NCBI nr
Match: TYK05541.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 2.14e-32
Identity = 65/82 (79.27%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 1  MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
          MD IMFVNGRMKMDEGANKRIKI Y          + TWLFA SRLKKLASTTTTQVKKA
Sbjct: 10 MDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLASTTTTQVKKA 69

Query: 61 EDSSNNSSERNGNIIIRTTMSI 72
          EDSSNNSSERNGNI+IRTTM+I
Sbjct: 70 EDSSNNSSERNGNIMIRTTMTI 91

BLAST of IVF0000020 vs. NCBI nr
Match: KAA0060939.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 1.11e-27
Identity = 63/82 (76.83%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKMDEGANKRIKIPY          + TWLFA +RLKK+ASTTT QVKKA
Sbjct: 506 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMASTTT-QVKKA 565

Query: 61  EDSSNNSSERNGNIIIRTTMSI 72
           EDSSNNSSERNGNI+IRTTM+I
Sbjct: 566 EDSSNNSSERNGNIMIRTTMTI 586

BLAST of IVF0000020 vs. NCBI nr
Match: XP_008444580.1 (PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo])

HSP 1 Score: 114 bits (286), Expect = 1.17e-27
Identity = 63/82 (76.83%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKMDEGANKRIKIPY          + TWLFA +RLKK+ASTTT QVKKA
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMASTTT-QVKKA 582

Query: 61  EDSSNNSSERNGNIIIRTTMSI 72
           EDSSNNSSERNGNI+IRTTM+I
Sbjct: 583 EDSSNNSSERNGNIMIRTTMTI 603

BLAST of IVF0000020 vs. NCBI nr
Match: XP_004143023.2 (uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical protein Csa_018711 [Cucumis sativus])

HSP 1 Score: 113 bits (283), Expect = 3.01e-27
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKMDEGANKRIKIPY          + TWLFA +RLKKLASTTT QVKKA
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKLASTTT-QVKKA 582

Query: 61  EDSSNNSSERNGNIIIRTTMSI 72
           EDSSNNSSERNGN +IRTTM+I
Sbjct: 583 EDSSNNSSERNGNTMIRTTMTI 603

BLAST of IVF0000020 vs. NCBI nr
Match: XP_038886260.1 (uncharacterized protein LOC120076487 [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 6.36e-22
Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QVTWLFAISRLKKLASTTTTQVKKA 60
           MDCIMFVNG MKM+E ANKRIKIPY          + TWLFA +RLKKL STTT QVKKA
Sbjct: 524 MDCIMFVNGGMKMEEAANKRIKIPYHAARMISKQMEATWLFATARLKKLTSTTT-QVKKA 583

Query: 61  EDSSNNSSERNGNIIIRTTM 70
           EDSS NSSE NGNII RTTM
Sbjct: 584 EDSSKNSSEGNGNII-RTTM 601

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0T41.4e-2379.27Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7V5F71.2e-2276.83Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5... [more]
A0A1S3BA591.2e-2276.83uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=... [more]
A0A0A0LL282.6e-2276.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1[more]
A0A6J1BPK83.9e-1060.26uncharacterized protein LOC111004666 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
Match NameE-valueIdentityDescription
TYK05541.12.14e-3279.27Armadillo-like helical [Cucumis melo var. makuwa][more]
KAA0060939.11.11e-2776.83Armadillo-like helical [Cucumis melo var. makuwa][more]
XP_008444580.11.17e-2776.83PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo][more]
XP_004143023.23.01e-2776.83uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical ... [more]
XP_038886260.16.36e-2272.50uncharacterized protein LOC120076487 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000020.2IVF0000020.2mRNA