IVF0000007 (gene) Melon (IVF77) v1

Overview


Name	IVF0000007
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Phytosulfokine-beta
Location	chr03: 26383683 .. 26384424 (-)
RNA-Seq Expression	IVF0000007
Synteny	IVF0000007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTACGTACCGTCGTCATATCCTACTCATCCGTTACGTTCTCAAATCTCTCTCTCTCCCTGCTCTCCTAATTATTTCTGCCAGCGACCATATTTCATTTTCAATTGTGTGTTTAAAAAGCCGAGAATCGCAATCCTTTTTCCTCCACTCTTAATTCATTTCCAATTCACAAAAATATGTCGAAGAAGCTCGCAGCTCTCTTCACCATTATTGCGGCACTTGTAACAATAATGTCCCTCATCGTCATACCCTCCTCCGAAGCAGCTCGTCCTATCCCTTCATTATTCAAACCCCAAAATCCAGTAAGTTTAATTTAATTTCAAAAATCTCCTTTCAAAACTCATTACTACTTATTCCATTATTCTTAATTTCCATTGCGTATTTCTGTAATTGATCAGATCGTTTCTCGAGAGCTCGTCGCTGATCATAATAACGAGGGAATATCATGTGAAGGACTAGGGAAAGAAGATTGCCTGATTAAAAGAACCTTACAGGCTCATATTGATTACGTTTATACTTGTGATCCAACCAAGCCATGAACTATACTGCTCATCTTTTATTTTATTTTCTTTGATCATTAGTTACAGTTTCATAATTAAATAAGGTAATTTACTCATTCTTCTTCTTAATTCCTTTTTTGTTTGTCTGTCCACAAAAATAGACGGAGATGATAATCCTTTTTTCGTTTCGACGCTTTACGAACTAACCGACGGCCGGCCGGTTGGTTGGCGGTGGTTCCCA

mRNA sequence

CAATTACGTACCGTCGTCATATCCTACTCATCCGTTACGTTCTCAAATCTCTCTCTCTCCCTGCTCTCCTAATTATTTCTGCCAGCGACCATATTTCATTTTCAATTGTGTGTTTAAAAAGCCGAGAATCGCAATCCTTTTTCCTCCACTCTTAATTCATTTCCAATTCACAAAAATATGTCGAAGAAGCTCGCAGCTCTCTTCACCATTATTGCGGCACTTGTAACAATAATGTCCCTCATCGTCATACCCTCCTCCGAAGCAGCTCGTCCTATCCCTTCATTATTCAAACCCCAAAATCCAATCGTTTCTCGAGAGCTCGTCGCTGATCATAATAACGAGGGAATATCATGTGAAGGACTAGGGAAAGAAGATTGCCTGATTAAAAGAACCTTACAGGCTCATATTGATTACGTTTATACTTGTGATCCAACCAAGCCATGAACTATACTGCTCATCTTTTATTTTATTTTCTTTGATCATTAGTTACAGTTTCATAATTAAATAAGGTAATTTACTCATTCTTCTTCTTAATTCCTTTTTTGTTTGTCTGTCCACAAAAATAGACGGAGATGATAATCCTTTTTTCGTTTCGACGCTTTACGAACTAACCGACGGCCGGCCGGTTGGTTGGCGGTGGTTCCCA

Coding sequence (CDS)

ATGTCGAAGAAGCTCGCAGCTCTCTTCACCATTATTGCGGCACTTGTAACAATAATGTCCCTCATCGTCATACCCTCCTCCGAAGCAGCTCGTCCTATCCCTTCATTATTCAAACCCCAAAATCCAATCGTTTCTCGAGAGCTCGTCGCTGATCATAATAACGAGGGAATATCATGTGAAGGACTAGGGAAAGAAGATTGCCTGATTAAAAGAACCTTACAGGCTCATATTGATTACGTTTATACTTGTGATCCAACCAAGCCATGA

Protein sequence

MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLGKEDCLIKRTLQAHIDYVYTCDPTKP

Homology

[Close]

BLAST of IVF0000007 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 15 LVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLGKEDCLIKRTLQ 74
          L+ I  L  +  ++AARP+      ++  V  E V D      +CEG+G+E+CL++RTL 
Sbjct: 8  LLLIALLFSLSLAQAARPLQPADSTKSVHVIPEKVHDE-----ACEGVGEEECLMRRTLT 67

Query: 75 AHIDYVYTCD 85
          AH+DY+YT D
Sbjct: 68 AHVDYIYTQD 72

[Close]

BLAST of IVF0000007 vs. ExPASy Swiss-Prot
Match: Q9SZG4 (Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-04
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 12 IAALVTIMSLIVIPS-SEAARPIPSLF-----KPQNPIVSRELVAD--HNNEGISCEGLG 71
          ++ L+TI  L+     + +ARP P+ F      P + + S E++    H   G SC+   
Sbjct: 4  LSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCDKED 63

Query: 72 KEDCLIKRTLQAHIDYVYT 83
           EDCL++RTL AH+DY+YT
Sbjct: 64 DEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of IVF0000007 vs. ExPASy TrEMBL
Match: A0A5A7V550 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001000 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE
Sbjct: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYVYTCDPTKP 89
          GLGKEDCLIKRTLQAHIDYVYTCDPTKP
Sbjct: 61 GLGKEDCLIKRTLQAHIDYVYTCDPTKP 88

[Close]

BLAST of IVF0000007 vs. ExPASy TrEMBL
Match: A0A0A0LR23 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSK LA+L T IAAL TIMSLI++PSSE  RPIPS        +  E   +HNN+G SCE
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSE-GRPIPSF------ELIPEFATNHNNDG-SCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYVYTCD-PTKP 89
          G GKEDCLI+RTLQAH DYVYTCD PTKP
Sbjct: 61 GSGKEDCLIRRTLQAHTDYVYTCDNPTKP 81

[Close]

BLAST of IVF0000007 vs. ExPASy TrEMBL
Match: A0A7J9CFK1 (Phytosulfokine-beta OS=Gossypium gossypioides OX=34282 GN=Gogos_004187 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELV-ADHNNEGISCEGL 63
          KL +LF  IAAL+    L     S AARP P+LF  Q+  V  E V AD N     CEG+
Sbjct: 3  KLCSLF--IAALLFNFML-----SYAARPEPTLFLTQHGGVEAEKVDADEN-----CEGI 62

Query: 64 GKEDCLIKRTLQAHIDYVYT 83
          GKE+CL++RTL AH+DY+YT
Sbjct: 63 GKEECLMRRTLAAHVDYIYT 70

[Close]

BLAST of IVF0000007 vs. ExPASy TrEMBL
Match: M5VYE0 (Phytosulfokine-beta OS=Prunus persica OX=3760 GN=PRUPE_8G150200 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLF-----KPQNPIVSRELVADHNNE 60
          M+ KL +L  I  AL+  +SL    SS AARP+PS F     K Q+ +   E+      E
Sbjct: 1  MASKLTSLCFI--ALILFLSL----SSSAARPLPSAFDANAMKAQDELKDVEVEKAMVEE 60

Query: 61 GISCEGLGKEDCLIKRTLQAHIDYVYT 83
            SCEG+G+E+CL++RTL AHIDY+YT
Sbjct: 61 --SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of IVF0000007 vs. ExPASy TrEMBL
Match: A0A6A5MZE7 (Phytosulfokine-beta OS=Lupinus albus OX=3870 GN=Lal_00011559 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 29  AARPIPSLF-----KPQNPIVSRELVADHNNEGISCEGLGKEDCLIKRTLQAHIDYVYTC 88
           A+RP+P+       K ++ I+  E V   N EG SCEG+G+EDCL++RTL AH DY+YT 
Sbjct: 43  ASRPVPASSLDISNKSKHEIIEEESV---NMEGSSCEGIGEEDCLMRRTLVAHTDYIYT- 102

[Close]

BLAST of IVF0000007 vs. NCBI nr
Match: KAA0060965.1 (phytosulfokines-like [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 5.83e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE
Sbjct: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYVYTCDPTKP 88
          GLGKEDCLIKRTLQAHIDYVYTCDPTKP
Sbjct: 61 GLGKEDCLIKRTLQAHIDYVYTCDPTKP 88

[Close]

BLAST of IVF0000007 vs. NCBI nr
Match: KGN62431.1 (hypothetical protein Csa_018781 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.16e-25
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSK LA+L T IAAL TIMSLI++PSSE  RPIPS        +  E   +HNN+G SCE
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEG-RPIPSFE------LIPEFATNHNNDG-SCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYVYTCD-PTKP 88
          G GKEDCLI+RTLQAH DYVYTCD PTKP
Sbjct: 61 GSGKEDCLIRRTLQAHTDYVYTCDNPTKP 81

[Close]

BLAST of IVF0000007 vs. NCBI nr
Match: XP_031739822.1 (phytosulfokines-like [Cucumis sativus] >KAE8653250.1 hypothetical protein Csa_020040 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.54e-25
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 1  MSK-KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISC 60
          MSK  LAAL T++AALVTIMSLI+IPSS+A        +P + IVS+ELVAD NN+   C
Sbjct: 1  MSKINLAALITLLAALVTIMSLIIIPSSQATTSC----EPPHRIVSQELVADQNNDE-PC 60

Query: 61 EGLGKEDCLIKRTLQAHIDYVYTCD-PTKP 88
          EG GKEDCLI+RTLQAH DYVYTCD PT+P
Sbjct: 61 EGPGKEDCLIRRTLQAHTDYVYTCDNPTEP 85

[Close]

BLAST of IVF0000007 vs. NCBI nr
Match: XP_031744017.1 (phytosulfokines-like [Cucumis sativus] >KAE8653241.1 hypothetical protein Csa_019762 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 5.85e-24
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLG 63
           L AL T++AALVTIMSLI+IPSS+A        +P + IVS+ELVAD NN+   CEG G
Sbjct: 5  NLPALITLLAALVTIMSLIIIPSSQATTSC----EPPHRIVSQELVADQNNDE-PCEGPG 64

Query: 64 KEDCLIKRTLQAHIDYVYTCD-PTKP 88
          KEDCLI+RTLQAH DYVYTCD PT P
Sbjct: 65 KEDCLIRRTLQAHTDYVYTCDNPTNP 85

[Close]

BLAST of IVF0000007 vs. NCBI nr
Match: XP_031736089.1 (phytosulfokines-like [Cucumis sativus] >XP_031737677.1 phytosulfokines-like [Cucumis sativus] >KAE8653242.1 hypothetical protein Csa_019948 [Cucumis sativus] >KAE8653248.1 hypothetical protein Csa_019586 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.67e-23
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MSK-KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISC 60
          MSK  L AL  ++AALVTIMSLI+IPSS+A        +P + IVS+ELVAD NN+   C
Sbjct: 1  MSKINLPALIILLAALVTIMSLIIIPSSQATTSC----EPPHRIVSQELVADQNNDE-PC 60

Query: 61 EGLGKEDCLIKRTLQAHIDYVYTCD-PTKP 88
          EG GKEDCLI+RTLQAH DYVYTCD PT+P
Sbjct: 61 EGPGKEDCLIRRTLQAHTDYVYTCDNPTEP 85

[Close]

BLAST of IVF0000007 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 12 IAALVTIMSLIVIPS-SEAARPIPSLF-----KPQNPIVSRELVAD--HNNEGISCEGLG 71
          ++ L+TI  L+     + +ARP P+ F      P + + S E++    H   G SC+   
Sbjct: 4  LSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCDKED 63

Query: 72 KEDCLIKRTLQAHIDYVYT 83
           EDCL++RTL AH+DY+YT
Sbjct: 64 DEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of IVF0000007 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 24/68 (35.29%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 16 VTIMSLIVIPS-SEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLGKEDCLIKRTLQ 75
          + IM+L++  + + AAR  P+     +   S + +     E  SC G+G+E+CLI+R+L 
Sbjct: 7  IFIMALLLCSTLTYAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIRRSLV 66

Query: 76 AHIDYVYT 83
           H DY+YT
Sbjct: 67 LHTDYIYT 74

[Close]

BLAST of IVF0000007 vs. TAIR 10
Match: AT1G13590.1 (phytosulfokine 1 precursor )

HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04
Identity = 25/84 (29.76%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 2  SKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEG 61
          S+ L   FT++  L+++ S +++     A P PS      P    +     + +G+ C+ 
Sbjct: 6  SEVLIFFFTLV-LLLSMASSVILREDGFAPPKPS------PTTHEKASTKGDRDGVECKN 65

Query: 62 L-GKEDCLIKRTLQAHIDYVYTCD 85
             +E+CL+K+T+ AH DY+YT D
Sbjct: 66 SDSEEECLVKKTVAAHTDYIYTQD 82

The following BLAST results are available for this feature:

BLAST of IVF0000007 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	1.8e-06	40.00	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9SZG4	6.4e-04	36.71	Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1	[more]

BLAST of IVF0000007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V550	1.5e-40	100.00	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G...	[more]
A0A0A0LR23	1.2e-18	66.29	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1	[more]
A0A7J9CFK1	2.4e-06	51.25	Phytosulfokine-beta OS=Gossypium gossypioides OX=34282 GN=Gogos_004187 PE=3 SV=1	[more]
M5VYE0	4.2e-06	45.98	Phytosulfokine-beta OS=Prunus persica OX=3760 GN=PRUPE_8G150200 PE=3 SV=1	[more]
A0A6A5MZE7	4.2e-06	49.23	Phytosulfokine-beta OS=Lupinus albus OX=3870 GN=Lal_00011559 PE=3 SV=1	[more]

BLAST of IVF0000007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060965.1	5.83e-54	100.00	phytosulfokines-like [Cucumis melo var. makuwa]	[more]
KGN62431.1	3.16e-25	66.29	hypothetical protein Csa_018781 [Cucumis sativus]	[more]
XP_031739822.1	3.54e-25	66.67	phytosulfokines-like [Cucumis sativus] >KAE8653250.1 hypothetical protein Csa_02...	[more]
XP_031744017.1	5.85e-24	65.12	phytosulfokines-like [Cucumis sativus] >KAE8653241.1 hypothetical protein Csa_01...	[more]
XP_031736089.1	1.67e-23	64.44	phytosulfokines-like [Cucumis sativus] >XP_031737677.1 phytosulfokines-like [Cuc...	[more]

BLAST of IVF0000007 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37720.1	4.6e-05	36.71	phytosulfokine 6 precursor	[more]
AT3G49780.1	1.7e-04	35.29	phytosulfokine 4 precursor	[more]
AT1G13590.1	3.0e-04	29.76	phytosulfokine 1 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 47..83 e-value: 6.1E-8 score: 33.6
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..83
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000007.2	IVF0000007.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity