HG10023538 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023538
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 35108857 .. 35109072 (-)
RNA-Seq ExpressionHG10023538
SyntenyHG10023538
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGTGGTGAGCAAGCAACAGGTAAAGAATGTGAAGGCAATAGAGATGGCAACGTGGTTACAGAAGCGTTGTAATGGCTTACAGAAGTTAGGCAGAGTTATGAGTCGAATGCCAGTGCGATTCATATTTGAGATCCCAGCTGCAGCTGATCCAGCACTCATCACTGCATATCCCAAGGCCTGCAACCAACACAAATTTTTTTTGAAATAA

mRNA sequence

ATGGCAGAAGTGGTGAGCAAGCAACAGGTAAAGAATGTGAAGGCAATAGAGATGGCAACGTGGTTACAGAAGCGTTGTAATGGCTTACAGAAGTTAGGCAGAGTTATGAGTCGAATGCCAGTGCGATTCATATTTGAGATCCCAGCTGCAGCTGATCCAGCACTCATCACTGCATATCCCAAGGCCTGCAACCAACACAAATTTTTTTTGAAATAA

Coding sequence (CDS)

ATGGCAGAAGTGGTGAGCAAGCAACAGGTAAAGAATGTGAAGGCAATAGAGATGGCAACGTGGTTACAGAAGCGTTGTAATGGCTTACAGAAGTTAGGCAGAGTTATGAGTCGAATGCCAGTGCGATTCATATTTGAGATCCCAGCTGCAGCTGATCCAGCACTCATCACTGCATATCCCAAGGCCTGCAACCAACACAAATTTTTTTTGAAATAA

Protein sequence

MAEVVSKQQVKNVKAIEMATWLQKRCNGLQKLGRVMSRMPVRFIFEIPAAADPALITAYPKACNQHKFFLK
Homology
[Close]
BLAST of HG10023538 vs. NCBI nr
Match: PKI45522.1 (hypothetical protein CRG98_034040 [Punica granatum])

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-10
Identity = 38/62 (61.29%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 2  AEVVSKQQVKNVKAIEMATWLQKRCNGLQKLGRVMSRMPVRFIFEIPAAADPALITAYPK 61
          A+V S  Q K VKAIE ATWLQK  NGLQK GR +  +PVRF F  P  ADPALI AY  
Sbjct: 6  ADVASNMQPKKVKAIETATWLQKLRNGLQKFGRAVCLIPVRFRFVTPEEADPALINAYAN 65

Query: 62 AC 64
           C
Sbjct: 66 TC 67

[Close]
BLAST of HG10023538 vs. ExPASy TrEMBL
Match: A0A2I0INE4 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_034040 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 38/62 (61.29%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 2  AEVVSKQQVKNVKAIEMATWLQKRCNGLQKLGRVMSRMPVRFIFEIPAAADPALITAYPK 61
          A+V S  Q K VKAIE ATWLQK  NGLQK GR +  +PVRF F  P  ADPALI AY  
Sbjct: 6  ADVASNMQPKKVKAIETATWLQKLRNGLQKFGRAVCLIPVRFRFVTPEEADPALINAYAN 65

Query: 62 AC 64
           C
Sbjct: 66 TC 67

The following BLAST results are available for this feature:
BLAST of HG10023538 vs. NCBI nr
Match NameE-valueIdentityDescription
PKI45522.14.7e-1061.29hypothetical protein CRG98_034040 [Punica granatum][more]
BLAST of HG10023538 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10023538 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I0INE42.3e-1061.29Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_034040 PE=4 SV=1[more]
BLAST of HG10023538 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023538.1HG10023538.1mRNA