HG10023522 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023522
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein-serine/threonine phosphatase
LocationChr05: 34976503 .. 34978972 (-)
RNA-Seq ExpressionHG10023522
SyntenyHG10023522
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCAATGGACAATGGACGTGAGATTTCGTGGGGTTTTGGATTGGATAAGGGACGTAGAACTGCAATGGAAGATGCCATCGCCATTGTTCCAGAGTTTCTATCTCCGGTGGGATGGAAAGATGATGGGTCGGTTGAGGAAGATTCTCAGCTGGTTCATTATTTTCGCTTGTTTGATGGGCACGAAGGTTCTCAGGTGCTTCTTTTCGTTATCTTTAATGACTTGAATGCATTGATTTGTACGCAGGTTTTAGGATATGACCTTTTATGTTTGATAATCATTTGGTTCAAATTCAGTTGTAGGTGTTATTTTAAAATTATTGAGTTGGATTGAAACTAGTCAAATTTATTATCAATTTTAAATTATGTATTTTGATTATATTGTTGTTTCCTTCTTTCAATTTTATTCCTTTGTAAGTATGCCTGGGTTGGATTTTTTTTTAATTAAAAAAAAAGTTCGACGATAAGGTAACCATTATGCCTTAATAAGGCCAAATCTCTTACTCTATTGGTGTTTTAAAGATTTAAAAATAGCCTACTGATTCAATTAAATATGATGTCGAATTACTATTTTTAAGTTGACCTATTTAGTGAGTATTTCATAACTATTTGGCCTTAAATATTTTAGTTATGGGAAACCAATAGGATAGTACACGCAGGGGTGGTTCTATGAAGGGGCAGGTGCCCCCCACATATTACTCAAATGGTAAAAGCCAATGACCAGAGAATGGTTCAGTGGCGTGGGAGGGAACTGCTTTCTATAGTGTCAGGCCTGGGTTCAAACCGTAACCGCGAGTATCGCTTTTGTATCTGAATATTCAACATTTTTATATTTCTAATTTTTTCTATATATATAAATAAATTATTCACCAAATATATTTACAAAAACAAGTCTAAAAAACTTAATTTCATTTTAATTTAAGTCTGAAAAACTTAATTTCATTTTAATTTTCTCTTTTATACAAATATATAAATATTTCTATTTTTATAAAATTATTTTACGAAAATTGATGATGTGTTTTGTTTATATATTTTGGCAAACCATTCAATAAAGATTTATAACAATTTTGTAATTAATATTACTTAATCTAGATATCATATATTAATGCATTGAAAATTATACTTATATGAAGGTTAAATTAAAGTTTAGTCCCTAAGTTTTAAAAATTATTACTAATAAATTCTTAAACTTTCAATTTTCACTCTAATCTCTAAAAATGTCTAATAAATCTATAAACTTCAATTTTATATTTAATAGGCTTCAAAAATATTAAAAATATTTACAAGTTAATTGTTTTATAACACACACAAAAAAAAAATAGTTTATGTCTAATTGAACTAAGTTTTAAATTTTTTTTGTTAATAGATAAATTAATTTAAAAAAATATCAAATTGTATCTATTAAGCAAAAGGTTAAATTCAATGTCTAATATAACATTTAATTTTTAATATTTTGAAATATGTTAAGACCTATTCGATGCTGACATTTTAGAAATCTTTTTTTAATACGATATTTTAAGAATCTATTAAACACAAAAATTTAGAATTTATGGACTTAGTAAATATTTTTTAAAAGTTTAGAAAATATATAAAAACAAATCTAGAAATTTATAGGCTAAATTTCTAATTCTGTATAGTTATGAAGTTCTGAATGTGGCACACGAGTGCCGTTGTTTCACCCTGCAATGGAAACAGAGGAAGCCTCTTTTTCACTGCAAATGTCTGCACGCAACTGCAAATCTCTATATTGCTTTCACTTTACAAGTATACACCACCAATAATTAAGAATATCAACTTTAGTTATTTATTTATTTTGCAAAATGAGAAATGCTCCAATAAGATTCTGGAATGTGATCACTATAGGGACTGGGAAGCGAGGGTGCACGTGTCTCATCACGTGAGCTCCCCTCTTCTGAATTCTTGACATTTATTTTTAATTGTTAACTAATCGCTTCTTTTTGAATGGCCATCGTATTATTTTGAAGGAAACTTTTGTTAGATGCCCTTTAAATCCGTCTGTTGTATTAAATTTCTTTCCTTATTATCCACTACTTTAGTTCAACAACGAAAGGATAGAATTTGAACGTGATGGTTTGATTTTTCATCTTAATAACAAAAAAATTAAAGTAATAAATGGGGCTAACATGAAAATTTCAATTTAGAAAGGAAAGGGGAACAAGTGGAAGTGGAGGGGTATTTTGGAAAGGATATTACCTGAAATATCTGATTTGAGTCGTCTTAAAATGGGCCTAGGCCTGGGCCTGATCTGGACCAGATCTAATGCAACGCATTGGGAGTTACGACTTGTCGATTTTTGGTTGAATTGTGACATGTCGTGCACTCGTGATAGAATAGAAAGGAAACTAGAAAGGGTAGGGGCAGGATGGTCATCTCTCGCTCTGCCTGTGCCGAACGGAAAAGCGAGGGAAGCCACCTCACCTGCTCCCGAATTCCACCTTCGAGTTTGA

mRNA sequence

ATGAGTGCAATGGACAATGGACGTGAGATTTCGTGGGGTTTTGGATTGGATAAGGGACGTAGAACTGCAATGGAAGATGCCATCGCCATTGTTCCAGAGTTTCTATCTCCGGTGGGATGGAAAGATGATGGGTCGGTTGAGGAAGATTCTCAGCTGGTTCATTATTTTCGCTTGTTTGATGGGCACGAAGGTTCTCAGAAAGGAAAGGGGAACAAGTGGAAGTGGAGGGGTATTTTGGAAAGGATATTACCTGAAATATCTGATTTGAGTCGTCTTAAAATGGGCCTAGGCCTGGGCCTGATCTGGACCAGATCTAATGCAACGCATTGGGAGTTACGACTTGTCGATTTTTGGTTGAATTGTGACATGTCGTGCACTCGTGATAGAATAGAAAGGAAACTAGAAAGGGTAGGGGCAGGATGGTCATCTCTCGCTCTGCCTGTGCCGAACGGAAAAGCGAGGGAAGCCACCTCACCTGCTCCCGAATTCCACCTTCGAGTTTGA

Coding sequence (CDS)

ATGAGTGCAATGGACAATGGACGTGAGATTTCGTGGGGTTTTGGATTGGATAAGGGACGTAGAACTGCAATGGAAGATGCCATCGCCATTGTTCCAGAGTTTCTATCTCCGGTGGGATGGAAAGATGATGGGTCGGTTGAGGAAGATTCTCAGCTGGTTCATTATTTTCGCTTGTTTGATGGGCACGAAGGTTCTCAGAAAGGAAAGGGGAACAAGTGGAAGTGGAGGGGTATTTTGGAAAGGATATTACCTGAAATATCTGATTTGAGTCGTCTTAAAATGGGCCTAGGCCTGGGCCTGATCTGGACCAGATCTAATGCAACGCATTGGGAGTTACGACTTGTCGATTTTTGGTTGAATTGTGACATGTCGTGCACTCGTGATAGAATAGAAAGGAAACTAGAAAGGGTAGGGGCAGGATGGTCATCTCTCGCTCTGCCTGTGCCGAACGGAAAAGCGAGGGAAGCCACCTCACCTGCTCCCGAATTCCACCTTCGAGTTTGA

Protein sequence

MSAMDNGREISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFRLFDGHEGSQKGKGNKWKWRGILERILPEISDLSRLKMGLGLGLIWTRSNATHWELRLVDFWLNCDMSCTRDRIERKLERVGAGWSSLALPVPNGKAREATSPAPEFHLRV
Homology
[Close]
BLAST of HG10023522 vs. NCBI nr
Match: XP_023000377.1 (probable protein phosphatase 2C 6 [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-21
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 1  MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
          MSAMDNGR   EISWGFGLDKGRRT+MEDAIAIVPEFLSP  WKDDGSV+E   LVHYF 
Sbjct: 1  MSAMDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGSVKE-KPLVHYFG 60

Query: 61 LFDGHEGSQ 67
          LFDGH G Q
Sbjct: 61 LFDGHGGPQ 68

[Close]
BLAST of HG10023522 vs. NCBI nr
Match: XP_023514702.1 (probable protein phosphatase 2C 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-21
Identity = 62/103 (60.19%), Postives = 69/103 (66.99%), Query Frame = 0 

Query: 1   MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
           MSA+DNGR   EISWGFGLDKGRRT+MEDAIAIVPEFLSP  WKDDGS E++  LVHYF 
Sbjct: 4   MSAIDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGS-EKEKPLVHYFG 63

Query: 61  LFDGHEGSQKGKGNKWKWRGIL----ERILPEISDLSRLKMGL 97
           LFDGH G Q       K+  +L     R + E     R KM L
Sbjct: 64  LFDGHGGPQVSTYCSKKFHELLAEEWNRGVSENGQQERWKMAL 105

[Close]
BLAST of HG10023522 vs. NCBI nr
Match: XP_023514700.1 (probable protein phosphatase 2C 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = 0 

Query: 1   MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
           MSA+DNGR   EISWGFGLDKGRRT+MEDAIAIVPEFLSP  WKDDG  E++  LVHYF 
Sbjct: 4   MSAIDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDG-YEKEKPLVHYFG 63

Query: 61  LFDGHEGSQKGKGNKWKWRGIL----ERILPEISDLSRLKMGL 97
           LFDGH G+Q       K+  +L     R + E     R KM L
Sbjct: 64  LFDGHGGTQVSTYCSKKFHELLAEEWNRGVSENGQQERWKMAL 105

[Close]
BLAST of HG10023522 vs. NCBI nr
Match: XP_023514701.1 (protein phosphatase 2C 56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-20
Identity = 62/103 (60.19%), Postives = 68/103 (66.02%), Query Frame = 0 

Query: 1   MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
           MSA+DNG    EISWGFGLDKGRRT+MEDAIAIVPEFLSP  WKDDGSV+E   LVHYF 
Sbjct: 4   MSAIDNGSGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGSVKE-KPLVHYFG 63

Query: 61  LFDGHEGSQKGKGNKWKWRGIL----ERILPEISDLSRLKMGL 97
           LFDGH G Q       K+  +L     R + E     R KM L
Sbjct: 64  LFDGHGGPQVSTYCSKKFHELLAEEWNRGVSENGQQERWKMAL 105

[Close]
BLAST of HG10023522 vs. NCBI nr
Match: KAG7025837.1 (putative protein phosphatase 2C 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 8.9e-20
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1  MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
          MSA+DNGR   EISWGFGLDKGRRT+MEDAIAIVPEFLS   WKDDGSV+E   LVHYF 
Sbjct: 1  MSAIDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSSARWKDDGSVKE-KPLVHYFG 60

Query: 61 LFDGHEGSQ 67
          LFDGH G Q
Sbjct: 61 LFDGHGGPQ 68

[Close]
BLAST of HG10023522 vs. ExPASy TrEMBL
Match: A0A6J1KDH4 (Protein-serine/threonine phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111494632 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 1  MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
          MSAMDNGR   EISWGFGLDKGRRT+MEDAIAIVPEFLSP  WKDDGSV+E   LVHYF 
Sbjct: 1  MSAMDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGSVKE-KPLVHYFG 60

Query: 61 LFDGHEGSQ 67
          LFDGH G Q
Sbjct: 61 LFDGHGGPQ 68

[Close]
BLAST of HG10023522 vs. ExPASy TrEMBL
Match: A0A6J1HKW1 (Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC111464479 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-19
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 1  MSAMDNGR---EISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEEDSQLVHYFR 60
          MSA+DNG    EISWGFGLDKGRRT+MEDAIAIVPEFLS   WKDDGSV E   LVHYF 
Sbjct: 4  MSAIDNGGGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSSARWKDDGSVRE-KPLVHYFG 63

Query: 61 LFDGHEGSQ 67
          LFDGH G Q
Sbjct: 64 LFDGHGGPQ 71

[Close]
BLAST of HG10023522 vs. ExPASy TrEMBL
Match: A0A6J1D3B9 (Protein-serine/threonine phosphatase OS=Momordica charantia OX=3673 GN=LOC111016894 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 9  EISWGFGLDKGRRTAMEDAIAIVPEFLSPV-GWKDDGSVEEDSQLVHYFRLFDGHEGSQ 67
          EISWGF LDKGRR AMEDAIAI P FL PV GWKD GS +E+   VHYF LFDGH GSQ
Sbjct: 37 EISWGFDLDKGRRAAMEDAIAIAPHFLPPVGGWKDGGSSKEEDSPVHYFGLFDGHGGSQ 95

[Close]
BLAST of HG10023522 vs. ExPASy TrEMBL
Match: A0A0D2T3U6 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G071300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.3e-07
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0 

Query: 6   NGREISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEE-------DSQLVHYFRL 65
           + + +SWGF LD+GRR+ MED   + P F+  +  KD G   E       +  LVHYF +
Sbjct: 95  SNKGVSWGFSLDQGRRSTMEDRAVVQPGFMK-LCCKDVGGCREPECEYAMEKSLVHYFGI 154

Query: 66  FDGHEGSQKGK 70
           FDGH G Q+G+
Sbjct: 155 FDGHGGDQRGR 164

[Close]
BLAST of HG10023522 vs. ExPASy TrEMBL
Match: A0A0D2VJD5 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G071300 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 6   NGREISWGFGLDKGRRTAMEDAIAIVPEFLSPVGWKDDGSVEE-------DSQLVHYFRL 65
           + + +SWGF LD+GRR+ MED   + P F+  +  KD G   E       +  LVHYF +
Sbjct: 95  SNKGVSWGFSLDQGRRSTMEDRAVVQPGFMK-LCCKDVGGCREPECEYAMEKSLVHYFGI 154

Query: 66  FDGHEGSQKGK 70
           FDGH G Q  K
Sbjct: 155 FDGHGGDQLQK 164

The following BLAST results are available for this feature:
BLAST of HG10023522 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023000377.13.6e-2181.16probable protein phosphatase 2C 6 [Cucurbita maxima][more]
XP_023514702.18.1e-2160.19probable protein phosphatase 2C 6 [Cucurbita pepo subsp. pepo][more]
XP_023514700.11.8e-2059.22probable protein phosphatase 2C 6 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023514701.12.3e-2060.19protein phosphatase 2C 56-like [Cucurbita pepo subsp. pepo][more]
KAG7025837.18.9e-2078.26putative protein phosphatase 2C 6, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of HG10023522 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10023522 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KDH41.8e-2181.16Protein-serine/threonine phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111494632... [more]
A0A6J1HKW13.7e-1976.81Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC1114644... [more]
A0A6J1D3B91.1e-1574.58Protein-serine/threonine phosphatase OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A0D2T3U69.3e-0742.25Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G071300 PE=4 ... [more]
A0A0D2VJD51.0e-0542.25Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G071300 PE=4 ... [more]
BLAST of HG10023522 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036457PPM-type phosphatase domain superfamilyGENE3D3.60.40.10coord: 2..90
e-value: 9.9E-7
score: 30.2
IPR036457PPM-type phosphatase domain superfamilySUPERFAMILY81606PP2C-likecoord: 10..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023522.1HG10023522.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity