HG10023509 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023509
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Leucine-rich repeat protein kinase family protein
Location	Chr05: 34836902 .. 34837102 (+)
RNA-Seq Expression	HG10023509
Synteny	HG10023509

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAGACACTACAGTTATTTAGAGGTTATGAGTATTACTGATAACTTTGGAGTGGTTATTGGAGAAGGAGGATTTGGAAAAGTTTATTTAGGTGCTTTAAAAGACAAAACTCCTGTTGCAGTCAAGCTGCTTTCACAATCATCCCAACAAGGCTACAAAGAATTTCGAGCCGAGGTGCTTTCCTATGTCGTTTGA

mRNA sequence

ATGAAGAACAGACACTACAGTTATTTAGAGGTTATGAGTATTACTGATAACTTTGGAGTGGTTATTGGAGAAGGAGGATTTGGAAAAGTTTATTTAGGTGCTTTAAAAGACAAAACTCCTGTTGCAGTCAAGCTGCTTTCACAATCATCCCAACAAGGCTACAAAGAATTTCGAGCCGAGGTGCTTTCCTATGTCGTTTGA

Coding sequence (CDS)

ATGAAGAACAGACACTACAGTTATTTAGAGGTTATGAGTATTACTGATAACTTTGGAGTGGTTATTGGAGAAGGAGGATTTGGAAAAGTTTATTTAGGTGCTTTAAAAGACAAAACTCCTGTTGCAGTCAAGCTGCTTTCACAATCATCCCAACAAGGCTACAAAGAATTTCGAGCCGAGGTGCTTTCCTATGTCGTTTGA

Protein sequence

MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEVLSYVV

Homology

[Close]

BLAST of HG10023509 vs. NCBI nr
Match: XP_038899862.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X2 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           MKNRHYSYLEV+SITDNFGVVIGEGGFGKVYLG LKDKT VAVK+LS SSQQGYK+FRAE
Sbjct: 563 MKNRHYSYLEVLSITDNFGVVIGEGGFGKVYLGTLKDKTQVAVKVLSPSSQQGYKQFRAE 622

Query: 61  VLSYVV 67
           +   +V
Sbjct: 623 IQLLIV 628

[Close]

BLAST of HG10023509 vs. NCBI nr
Match: XP_038899861.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X1 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           MKNRHYSYLEV+SITDNFGVVIGEGGFGKVYLG LKDKT VAVK+LS SSQQGYK+FRAE
Sbjct: 587 MKNRHYSYLEVLSITDNFGVVIGEGGFGKVYLGTLKDKTQVAVKVLSPSSQQGYKQFRAE 646

Query: 61  VLSYVV 67
           +   +V
Sbjct: 647 IQLLIV 652

[Close]

BLAST of HG10023509 vs. NCBI nr
Match: XP_038899864.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X3 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           MKNRHYSYLEV+SITDNFGVVIGEGGFGKVYLG LKDKT VAVK+LS SSQQGYK+FRAE
Sbjct: 437 MKNRHYSYLEVLSITDNFGVVIGEGGFGKVYLGTLKDKTQVAVKVLSPSSQQGYKQFRAE 496

Query: 61  VLSYVV 67
           +   +V
Sbjct: 497 IQLLIV 502

[Close]

BLAST of HG10023509 vs. NCBI nr
Match: XP_022155125.1 (senescence-induced receptor-like serine/threonine-protein kinase [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           +KN+ YSY EV+ ITDNF VVIGEGGFGKVYLGAL+D T VAVK+LS SSQQGYKEFRAE
Sbjct: 606 LKNQRYSYSEVVRITDNFEVVIGEGGFGKVYLGALEDLTMVAVKVLSPSSQQGYKEFRAE 665

[Close]

BLAST of HG10023509 vs. NCBI nr
Match: XP_022144079.1 (probable LRR receptor-like serine/threonine-protein kinase PAM74 isoform X1 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 61
           KNR YSY EV+SITDNF   IGEGGFGKVYLGAL+DKT VAVKLLS +S+QGYKEF+AE
Sbjct: 564 KNREYSYSEVVSITDNFRHAIGEGGFGKVYLGALEDKTLVAVKLLSSTSKQGYKEFQAE 622

[Close]

BLAST of HG10023509 vs. ExPASy Swiss-Prot
Match: C0LGL4 (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana OX=3702 GN=At2g28960 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-14
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 61
           + + ++Y EV ++TDNF  V+GEGGFG VY G L    P+AVKLLSQSS QGYKEF+AEV
Sbjct: 559 QTKRFTYSEVEALTDNFERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEV 618

[Close]

BLAST of HG10023509 vs. ExPASy Swiss-Prot
Match: O65924 (Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana OX=3702 GN=At2g19210 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-14
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 4   RHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 62
           R+Y Y EV+ +T+NF  V+G+GGFGKVY G L D   VAVK+LS+SS QGYKEFRAEV
Sbjct: 564 RYYKYSEVVKVTNNFERVLGQGGFGKVYHGVLND-DQVAVKILSESSAQGYKEFRAEV 620

[Close]

BLAST of HG10023509 vs. ExPASy Swiss-Prot
Match: Q9SI06 (Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g04300 OS=Arabidopsis thaliana OX=3702 GN=At2g04300 PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-14
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 61
           KNR ++Y EV+ +T+NF  ++G+GGFG VY G + D   VAVK+LS SS QGYKEF+AEV
Sbjct: 568 KNRRFTYSEVVKMTNNFEKILGKGGFGMVYHGTVNDAEQVAVKMLSPSSSQGYKEFKAEV 627

[Close]

BLAST of HG10023509 vs. ExPASy Swiss-Prot
Match: Q9FN93 (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana OX=3702 GN=At5g59680 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-14
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           MK R ++Y EV  +T+NFG V+GEGGFG V  G +     VAVKLLSQSS QGYKEF+AE
Sbjct: 565 MKKRKFTYSEVTKMTNNFGRVVGEGGFGVVCHGTVNGSEQVAVKLLSQSSTQGYKEFKAE 624

Query: 61  V 62
           V
Sbjct: 625 V 625

[Close]

BLAST of HG10023509 vs. ExPASy Swiss-Prot
Match: Q9LIG2 (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana OX=3702 GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 61
           KNR ++Y EV+++T+NF  V+G+GGFG VY G + +   VAVK+LS SS QGYKEF+AEV
Sbjct: 578 KNRRFTYSEVVTMTNNFERVLGKGGFGMVYHGTVNNTEQVAVKMLSHSSSQGYKEFKAEV 637

[Close]

BLAST of HG10023509 vs. ExPASy TrEMBL
Match: A0A6J1DLJ4 (senescence-induced receptor-like serine/threonine-protein kinase OS=Momordica charantia OX=3673 GN=LOC111022261 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           +KN+ YSY EV+ ITDNF VVIGEGGFGKVYLGAL+D T VAVK+LS SSQQGYKEFRAE
Sbjct: 606 LKNQRYSYSEVVRITDNFEVVIGEGGFGKVYLGALEDLTMVAVKVLSPSSQQGYKEFRAE 665

[Close]

BLAST of HG10023509 vs. ExPASy TrEMBL
Match: A0A2N9EI32 (Protein kinase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2322 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
          +KNR YSY EVM IT+NF  +IGEGGFGKVYLG L+D+T VAVKLLS SS+QGYKEFRAE
Sbjct: 9  LKNRQYSYSEVMRITNNFRTIIGEGGFGKVYLGILEDETQVAVKLLSPSSKQGYKEFRAE 68

[Close]

BLAST of HG10023509 vs. ExPASy TrEMBL
Match: A0A6J1CQM8 (probable LRR receptor-like serine/threonine-protein kinase At1g07560 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013853 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.7e-17
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 61
           KNR YSY EV+SITDNF   IGEGGFGKVYLGAL+DKT VAVKLLS +S+QGYKEF+AE
Sbjct: 551 KNREYSYSEVVSITDNFRHAIGEGGFGKVYLGALEDKTLVAVKLLSSTSKQGYKEFQAE 609

[Close]

BLAST of HG10023509 vs. ExPASy TrEMBL
Match: A0A6J1CR89 (probable LRR receptor-like serine/threonine-protein kinase PAM74 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013853 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.7e-17
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 61
           KNR YSY EV+SITDNF   IGEGGFGKVYLGAL+DKT VAVKLLS +S+QGYKEF+AE
Sbjct: 564 KNREYSYSEVVSITDNFRHAIGEGGFGKVYLGALEDKTLVAVKLLSSTSKQGYKEFQAE 622

[Close]

BLAST of HG10023509 vs. ExPASy TrEMBL
Match: A0A7N2KXY8 (Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-17
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 61
           KN+HYSY EV+SIT+NF  +IGEGGFGKVYLG L+++T VAVKLLS SS QGYKEFRAE
Sbjct: 417 KNQHYSYSEVVSITNNFKTIIGEGGFGKVYLGKLRNETQVAVKLLSTSSNQGYKEFRAE 475

[Close]

BLAST of HG10023509 vs. TAIR 10
Match: AT3G46350.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-15
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1   MKNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAE 60
           MK + +SY EVM +T+NF   +GEGGFG VY G L     VAVKLLSQSS QGYKEF+AE
Sbjct: 549 MKRKKFSYSEVMKMTNNFQRALGEGGFGTVYHGDLDSSQQVAVKLLSQSSTQGYKEFKAE 608

Query: 61  V 62
           V
Sbjct: 609 V 609

[Close]

BLAST of HG10023509 vs. TAIR 10
Match: AT5G59660.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-15
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 61
           K++ ++YLEV+ +T+NF  V+G+GGFG VY G +K    VAVK+LSQSS QGYK+F+AE 
Sbjct: 496 KSKRFTYLEVIKMTNNFQRVLGKGGFGMVYHGTVKGSDQVAVKVLSQSSTQGYKQFKAEA 555

Query: 62  LSY 65
           L Y
Sbjct: 556 LIY 558

[Close]

BLAST of HG10023509 vs. TAIR 10
Match: AT2G28960.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-15
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 61
           + + ++Y EV ++TDNF  V+GEGGFG VY G L    P+AVKLLSQSS QGYKEF+AEV
Sbjct: 559 QTKRFTYSEVEALTDNFERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEV 618

[Close]

BLAST of HG10023509 vs. TAIR 10
Match: AT2G19210.1 (Leucine-rich repeat transmembrane protein kinase protein )

HSP 1 Score: 77.4 bits (189), Expect = 4.8e-15
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 4   RHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 62
           R+Y Y EV+ +T+NF  V+G+GGFGKVY G L D   VAVK+LS+SS QGYKEFRAEV
Sbjct: 564 RYYKYSEVVKVTNNFERVLGQGGFGKVYHGVLND-DQVAVKILSESSAQGYKEFRAEV 620

[Close]

BLAST of HG10023509 vs. TAIR 10
Match: AT2G04300.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 77.4 bits (189), Expect = 4.8e-15
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 2   KNRHYSYLEVMSITDNFGVVIGEGGFGKVYLGALKDKTPVAVKLLSQSSQQGYKEFRAEV 61
           KNR ++Y EV+ +T+NF  ++G+GGFG VY G + D   VAVK+LS SS QGYKEF+AEV
Sbjct: 527 KNRRFTYSEVVKMTNNFEKILGKGGFGMVYHGTVNDAEQVAVKMLSPSSSQGYKEFKAEV 586

The following BLAST results are available for this feature:

BLAST of HG10023509 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899862.1	2.2e-22	83.33	probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X2 ...	[more]
XP_038899861.1	2.2e-22	83.33	probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X1 ...	[more]
XP_038899864.1	2.2e-22	83.33	probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X3 ...	[more]
XP_022155125.1	3.7e-17	80.00	senescence-induced receptor-like serine/threonine-protein kinase [Momordica char...	[more]
XP_022144079.1	1.4e-16	79.66	probable LRR receptor-like serine/threonine-protein kinase PAM74 isoform X1 [Mom...	[more]

BLAST of HG10023509 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LGL4	3.9e-14	61.67	Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidop...	[more]
O65924	6.7e-14	65.52	Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidops...	[more]
Q9SI06	6.7e-14	58.33	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g0...	[more]
Q9FN93	6.7e-14	62.30	Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidop...	[more]
Q9LIG2	1.5e-13	58.33	Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana OX=3702 GN=At3g21...	[more]

BLAST of HG10023509 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLJ4	1.8e-17	80.00	senescence-induced receptor-like serine/threonine-protein kinase OS=Momordica ch...	[more]
A0A2N9EI32	5.1e-17	76.67	Protein kinase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU...	[more]
A0A6J1CQM8	6.7e-17	79.66	probable LRR receptor-like serine/threonine-protein kinase At1g07560 isoform X2 ...	[more]
A0A6J1CR89	6.7e-17	79.66	probable LRR receptor-like serine/threonine-protein kinase PAM74 isoform X1 OS=M...	[more]
A0A7N2KXY8	8.8e-17	76.27	Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of HG10023509 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46350.1	1.6e-15	63.93	Leucine-rich repeat protein kinase family protein	[more]
AT5G59660.1	2.1e-15	57.14	Leucine-rich repeat protein kinase family protein	[more]
AT2G28960.1	2.8e-15	61.67	Leucine-rich repeat protein kinase family protein	[more]
AT2G19210.1	4.8e-15	65.52	Leucine-rich repeat transmembrane protein kinase protein	[more]
AT2G04300.1	4.8e-15	58.33	Leucine-rich repeat protein kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 1..65 e-value: 2.6E-16 score: 61.6
None	No IPR available	PANTHER	PTHR45631	OS07G0107800 PROTEIN-RELATED	coord: 2..62
None	No IPR available	PANTHER	PTHR45631:SF72	RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN, PUTATIVE-RELATED	coord: 2..62
IPR017441	Protein kinase, ATP binding site	PROSITE	PS00107	PROTEIN_KINASE_ATP	coord: 22..44
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023509.1	HG10023509.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity