HG10023493 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023493
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 34693222 .. 34693473 (+)
RNA-Seq ExpressionHG10023493
SyntenyHG10023493
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTAAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGGCCAAGCGCATCGAAAGGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGAAAGTCTTTGAAAGATATGGATTCAGCAAAGTTGAAGACTGGAATCAAGAAATGGGCTAAAGCCGTGGTGACTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCACTAA

mRNA sequence

ATGTCTGTAAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGGCCAAGCGCATCGAAAGGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGAAAGTCTTTGAAAGATATGGATTCAGCAAAGTTGAAGACTGGAATCAAGAAATGGGCTAAAGCCGTGGTGACTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCACTAA

Coding sequence (CDS)

ATGTCTGTAAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGGCCAAGCGCATCGAAAGGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGAAAGTCTTTGAAAGATATGGATTCAGCAAAGTTGAAGACTGGAATCAAGAAATGGGCTAAAGCCGTGGTGACTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCACTAA

Protein sequence

MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGIKKWAKAVVTYARTVSNRFGSWRH
Homology
BLAST of HG10023493 vs. NCBI nr
Match: KAA0059447.1 (hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK03877.1 hypothetical protein E5676_scaffold347G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKSLSLTKAEEAKR+ RH+AARKRRRSFDLCFSYPELPMERGKSLK+M+S KLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          KKWAKAVV YARTVS+RFGS R
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRR 82

BLAST of HG10023493 vs. NCBI nr
Match: KGN45542.1 (hypothetical protein Csa_016865 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-30
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKSLSLTKAEEAKR+ RH+AARKRRRSFDLCFSYPE+PMERGKSLK+M+S KLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          KKWAKAVV YARTVS+RFGS R
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRR 82

BLAST of HG10023493 vs. NCBI nr
Match: KAG6593505.1 (hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKSLSLTKAEEAKR  RHDAARKRRRSFDLCFS P+L MERGKSLK+MDS KLK+GI
Sbjct: 1  MSVKKSLSLTKAEEAKRSARHDAARKRRRSFDLCFSSPKLQMERGKSLKEMDSEKLKSGI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          +KWAK+VV YAR VS+RFGSWR
Sbjct: 61 RKWAKSVVAYARQVSDRFGSWR 82

BLAST of HG10023493 vs. NCBI nr
Match: KAG6575488.1 (hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.0e-28
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKS SLTKAEEAKR  RHDAARKRRRSFDLCFS PELPME GKSLK+MDS KLK  I
Sbjct: 1  MSVKKSFSLTKAEEAKRPGRHDAARKRRRSFDLCFSSPELPMEYGKSLKEMDSEKLKDAI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWRH 84
          +KWAKAVV YARTVSNRFGS RH
Sbjct: 61 RKWAKAVVAYARTVSNRFGSRRH 83

BLAST of HG10023493 vs. NCBI nr
Match: PON96105.1 (hypothetical protein TorRG33x02_080350 [Trema orientale])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKK+LSL + E AK  +       RR  +  CFS+ ELPMERGK+LK+MDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAAKGHQ----ISVRRGKYGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          K+WAKAVV YAR VS RFG  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGTR 78

BLAST of HG10023493 vs. ExPASy TrEMBL
Match: A0A5A7UXU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00720 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.0e-31
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKSLSLTKAEEAKR+ RH+AARKRRRSFDLCFSYPELPMERGKSLK+M+S KLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          KKWAKAVV YARTVS+RFGS R
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRR 82

BLAST of HG10023493 vs. ExPASy TrEMBL
Match: A0A0A0KB03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKSLSLTKAEEAKR+ RH+AARKRRRSFDLCFSYPE+PMERGKSLK+M+S KLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          KKWAKAVV YARTVS+RFGS R
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRR 82

BLAST of HG10023493 vs. ExPASy TrEMBL
Match: A0A2P5FE88 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKK+LSL + E AK  +       RR  +  CFS+ ELPMERGK+LK+MDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAAKGHQ----ISVRRGKYGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          K+WAKAVV YAR VS RFG  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGTR 78

BLAST of HG10023493 vs. ExPASy TrEMBL
Match: B9GH52 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G194100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 1   MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
           MS+KK+LSLT    +K ++    + KRRRS D CFS+ E+ +E GKSLKD+DS K K  I
Sbjct: 31  MSIKKTLSLT----SKAVKDDQVSEKRRRS-DRCFSFKEISIEPGKSLKDLDSNKFKIDI 90

Query: 61  KKWAKAVVTYARTVSNRFGSWR 83
           K+WA+AVV YAR VS+RFGS R
Sbjct: 91  KRWARAVVAYARQVSSRFGSAR 107

BLAST of HG10023493 vs. ExPASy TrEMBL
Match: A0A2N9HT47 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43080 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-13
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRIERHDAARKRRRSFDLCFSYPELPMERGKSLKDMDSAKLKTGI 60
          MSVKKSLSL  AE  K     D A++ R  +D CFS+ E+ +E GKSLK+MDS KLK  I
Sbjct: 1  MSVKKSLSLNNAEAIK----GDVAKRGR--YDRCFSFMEVSVEPGKSLKEMDSFKLKDEI 60

Query: 61 KKWAKAVVTYARTVSNRFGSWR 83
          K+WAKAVV YAR VS+RFGS R
Sbjct: 61 KRWAKAVVAYARQVSDRFGSPR 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059447.11.2e-3089.02hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK038... [more]
KGN45542.12.1e-3087.80hypothetical protein Csa_016865 [Cucumis sativus][more]
KAG6593505.11.5e-2884.15hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575488.12.0e-2885.54hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON96105.12.4e-1359.76hypothetical protein TorRG33x02_080350 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXU06.0e-3189.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB031.0e-3087.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1[more]
A0A2P5FE881.1e-1359.76Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV... [more]
B9GH523.3e-1357.32Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G194100 PE=4 ... [more]
A0A2N9HT474.3e-1360.98Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR36484OS01G0558700 PROTEINcoord: 1..82
NoneNo IPR availablePANTHERPTHR36484:SF2OS01G0558700 PROTEINcoord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023493.1HG10023493.1mRNA