HG10023451 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023451
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 34320840 .. 34321124 (-)
RNA-Seq ExpressionHG10023451
SyntenyHG10023451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTTGAGTCTCCTTCATGTTTAATATTCTTAACTGACTCAGTTGTCTCGGGCGAATGGCAACAGCAATTAAACCATCCTAGTATTGTAAGATTGAAGAATGAGAGGGCTATAAACAGCGAGCAAATAATGGCAATGCCAGAGCAGATGAAGATGGACATCGTAGATGGTAAGGAAGGAAAATTGAATACAGTATCAGCCTCAGCCAGATTAGAAGCTCTTAAGTGTCGTGCTGAACAATGGCAATCAGATAAAGATTCTGCATCTGTAACGAGACAATGA

mRNA sequence

ATGACATTTGAGTCTCCTTCATGTTTAATATTCTTAACTGACTCAGTTGTCTCGGGCGAATGGCAACAGCAATTAAACCATCCTAGTATTGTAAGATTGAAGAATGAGAGGGCTATAAACAGCGAGCAAATAATGGCAATGCCAGAGCAGATGAAGATGGACATCGTAGATGGTAAGGAAGGAAAATTGAATACAGTATCAGCCTCAGCCAGATTAGAAGCTCTTAAGTGTCGTGCTGAACAATGGCAATCAGATAAAGATTCTGCATCTGTAACGAGACAATGA

Coding sequence (CDS)

ATGACATTTGAGTCTCCTTCATGTTTAATATTCTTAACTGACTCAGTTGTCTCGGGCGAATGGCAACAGCAATTAAACCATCCTAGTATTGTAAGATTGAAGAATGAGAGGGCTATAAACAGCGAGCAAATAATGGCAATGCCAGAGCAGATGAAGATGGACATCGTAGATGGTAAGGAAGGAAAATTGAATACAGTATCAGCCTCAGCCAGATTAGAAGCTCTTAAGTGTCGTGCTGAACAATGGCAATCAGATAAAGATTCTGCATCTGTAACGAGACAATGA

Protein sequence

MTFESPSCLIFLTDSVVSGEWQQQLNHPSIVRLKNERAINSEQIMAMPEQMKMDIVDGKEGKLNTVSASARLEALKCRAEQWQSDKDSASVTRQ
Homology
[Close]
BLAST of HG10023451 vs. NCBI nr
Match: KAG7013993.1 (hypothetical protein SDJN02_24163, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 39/46 (84.78%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 7  SCLIFLTDSVVSGEWQQQLNHPSIVRLKNERAINSEQIMAMPEQMK 53
          S LIF TDSVV GEWQQQLNHPSIVR KN R I SEQIMAMPEQMK
Sbjct: 6  SFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEQIMAMPEQMK 51

[Close]
BLAST of HG10023451 vs. NCBI nr
Match: KAG6575450.1 (hypothetical protein SDJN03_26089, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-10
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 7  SCLIFLTDSVVSGEWQQQLNHPSIVRLKNERAINSEQIMAMPEQMK 53
          S LIF TDSVV GEWQQQLNHPSIVR KN R I SE+IMAMPEQMK
Sbjct: 17 SFLIFSTDSVVLGEWQQQLNHPSIVRWKNVRDIISEKIMAMPEQMK 62

The following BLAST results are available for this feature:
BLAST of HG10023451 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013993.12.8e-1084.78hypothetical protein SDJN02_24163, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575450.18.0e-1082.61hypothetical protein SDJN03_26089, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of HG10023451 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10023451 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10023451 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023451.1HG10023451.1mRNA