HG10023425 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023425
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nuclear pore complex protein
Location	Chr05: 34091489 .. 34093993 (-)
RNA-Seq Expression	HG10023425
Synteny	HG10023425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAAGAAATGGACGCCTCTCCCAGCTACTTTGACCCCGAAGACCTCACCATTCGGGAGCGATTTCGTCGCTACAGGTGCATTCGCCGGTTTCCTTTCTCTTTGTTGCTTCTTCGTTCTGGCAATGAAAAAAATACGTCTTCTACTCAGTTTGAAGTCGATTTCAGTTTGGACTGAAGTCATTTCTTGGGTAGAGGTTTCAATTAACTAACCTATTTAGTCGGGTTGTAAGAGCAGTCTATGTGGTCTTAGTTTGATTCGAATGCTTTCTAATGCTCAATTTTAACTTTATTGCGTTAAGAACATTTCGGGTGCATTGCTTTTTTAATTTCTCTGTAATCTGTATAGATGGCTGTCATTGGTTTAGTGCTTATTGTGTTAATGGGTTTTTATGTTTGGTTATGGAACGAATAGAGCTTCTTGGCAGTGTTTGGGTATATGCACCTTTTGGCTTATACTTTAATCTGAAATCGGTACATTATTTGTTTATTTATTTTTTCAAATGTGTTAATGGGTTATCAAGGATGGCCGGTGTACATCTGCTTTATGTGCAGTTGTTTGGAAAGATTACATTCCATCCTTTCTTTGGCTTTCTATCATGGAAGAAAACGCACAATGATATATCATATCTAATGTGCTAATAATTTCATATTTGAATTTTGGTGTACATTTTTTGGGTTGGACAACCTTGCCATTGCAGCCATTCTTGATGGAAGTGGGGTATTCACTTAAACAAACTTGTTCAGTAGCTTCCTTACCCATATTTGTTGTATTTACCATTTTTTATGCAATGCCACACTTAGCATGAATCTTATGCAGGAAAAGGCCGTCAAACATATCACCTCACAAGGAAGTTTCATCTTCAACAGTCAGTGAGTCTAGGATTTTGTACGATGGACAGGGATTCCATAGTCCAACAAATGCGGCACTGCTTCTTGAAAATTTTAAAGAAGAGGCTGAAAGCCTTTACGGTGATCGTCTGGAAGCAACACCATTAAAGGAAAGTTCTGCTTCTAAAAGAAGATTATCAATTGATAGCCAGGAAATTTCAGTAGTATCTCTTGGTCCTGATTCAGTTCGCCACTCACTGAAGGCTTGCAAGCATGAGAACGATCCATTATCTAATAGCGGGGATACAACTTATAACTTTTTTGCATCTCTTATGGACTCTTCAATACAAGGTTCTAATTGTGTCCAACATATTTCTTGCTCAATATTTGTCATCCCTTTGGGTATGAACTGTTTGTTTGAAAAAGCGTACACTTTGTGTCTCATTCACTCAAGATATTTTGTCAGGATTGATGTCTATCCCAGACTTGATATTAAGATTTGAGAGTTCTTGTCGTAATGTTTCAGAGTCGATAAGGTAATTTTCCATCTATGGTTCTCATTTGAATTATTTTATTGACATCTTGTTGTTGGTTTCCCGAAATTTTCGGATGAATTACATTATGCTCGTCTTTGTTTAGTGTCTCTTTGTAATCTTATCATCTATTTAGATTTCTTTGGGGGATAAGATACAATTCTGTCGATGGTATGAAATACAAAAGAAAAGGGAAAGAAAGTCAAAACCCGCGGTGAGATAGTTACAGAAAAAGATAAAAACTCTTCCAAGTGATGCAGAGAGTTAGTGCAATTTCATTGTTTAAAAAACCGCAGAAAATTTTCTTTGTTGCTGAAGACTGTTGTTTTTATCAAGCCACATCAACCAAAGGGACACTCTCACAAATTGAAACCATAAGATCTTCCTATCCCTTTAAAAGGATGAACTTCAAGAAATGAGGTAAGAAGGCGGTTGATATTGAGGGAGAGAGCCATCTGCCACTTGAAACTTTGCAGTGAGAAAATCATTAAATTTCTAGGAAAAAAGCTTGTTGAGGAAATTACCTCAGGTTCTGAATCTCTTTTACATATAGAAGCATTCTAGTGATATTGATAAAAAAAAGAAGCCTCTTTTGAAGAAGGACGTGGTTACTAGTTCTATCCTACCAATATACCATAGCCAATGAAAACTCGACATAACTGTTGGTTGTTACTAACTCTTTAAGCATCTTATCCCTTTTTATTGCTGGCAGATTTTTACTGTGATTTTGACTATTCTTTGTTCTTTTCTGCTAGGTATGGTTCCAACATTCAGCACCGCTTTATTGAAGACAAATTGATGAGGCAGAAGGCTCAATTTCTTGTAGATGAAGCTGCCTCTTGGTCCCTTTTGTGGTACCTGTATGGGAAAGGAAATATCTCTTTCTCCATAACTTTTTATAAGCTGTATTTTGTATTTGTCTACAAATATGTGTTTTCTGTTTCATGTATGTTTTTGTGGATCTTGGTTCAATCCTTCTGTCTAAATGGCAATAAATGTGTAGCACTAAATCCTGTTCCATCTGCATGCATTTGAAATTTTGGTTTACTAAAATTTTCCCTGCAACAACATTCTTTATGGGTGTGAAGCCAGCTCGTTTACCTGATATGTTTCTAAAGCTTCCTTCTGGGGTTCTTTAA

mRNA sequence

ATGGACGAAGAAATGGACGCCTCTCCCAGCTACTTTGACCCCGAAGACCTCACCATTCGGGAGCGATTTCGTCGCTACAGGAAAAGGCCGTCAAACATATCACCTCACAAGGAAGTTTCATCTTCAACAGTCAGTGAGTCTAGGATTTTGTACGATGGACAGGGATTCCATAGTCCAACAAATGCGGCACTGCTTCTTGAAAATTTTAAAGAAGAGGCTGAAAGCCTTTACGGTGATCGTCTGGAAGCAACACCATTAAAGGAAAGTTCTGCTTCTAAAAGAAGATTATCAATTGATAGCCAGGAAATTTCAGTAGTATCTCTTGGTCCTGATTCAGTTCGCCACTCACTGAAGGCTTGCAAGCATGAGAACGATCCATTATCTAATAGCGGGGATACAACTTATAACTTTTTTGCATCTCTTATGGACTCTTCAATACAAGGATTGATGTCTATCCCAGACTTGATATTAAGATTTGAGAGTTCTTGTCGTAATGTTTCAGAGTCGATAAGGTATGGTTCCAACATTCAGCACCGCTTTATTGAAGACAAATTGATGAGGCAGAAGGCTCAATTTCTTGTAGATGAAGCTGCCTCTTGGTCCCTTTTGTGGTACCTCACTAAATCCTGTTCCATCTGCATGCATTTGAAATTTTGGTTTACTAAAATTTTCCCTGCAACAACATTCTTTATGGGTGTGAAGCCAGCTCGTTTACCTGATATGTTTCTAAAGCTTCCTTCTGGGGTTCTTTAA

Coding sequence (CDS)

ATGGACGAAGAAATGGACGCCTCTCCCAGCTACTTTGACCCCGAAGACCTCACCATTCGGGAGCGATTTCGTCGCTACAGGAAAAGGCCGTCAAACATATCACCTCACAAGGAAGTTTCATCTTCAACAGTCAGTGAGTCTAGGATTTTGTACGATGGACAGGGATTCCATAGTCCAACAAATGCGGCACTGCTTCTTGAAAATTTTAAAGAAGAGGCTGAAAGCCTTTACGGTGATCGTCTGGAAGCAACACCATTAAAGGAAAGTTCTGCTTCTAAAAGAAGATTATCAATTGATAGCCAGGAAATTTCAGTAGTATCTCTTGGTCCTGATTCAGTTCGCCACTCACTGAAGGCTTGCAAGCATGAGAACGATCCATTATCTAATAGCGGGGATACAACTTATAACTTTTTTGCATCTCTTATGGACTCTTCAATACAAGGATTGATGTCTATCCCAGACTTGATATTAAGATTTGAGAGTTCTTGTCGTAATGTTTCAGAGTCGATAAGGTATGGTTCCAACATTCAGCACCGCTTTATTGAAGACAAATTGATGAGGCAGAAGGCTCAATTTCTTGTAGATGAAGCTGCCTCTTGGTCCCTTTTGTGGTACCTCACTAAATCCTGTTCCATCTGCATGCATTTGAAATTTTGGTTTACTAAAATTTTCCCTGCAACAACATTCTTTATGGGTGTGAAGCCAGCTCGTTTACCTGATATGTTTCTAAAGCTTCCTTCTGGGGTTCTTTAA

Protein sequence

MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPTNAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKACKHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRFIEDKLMRQKAQFLVDEAASWSLLWYLTKSCSICMHLKFWFTKIFPATTFFMGVKPARLPDMFLKLPSGVL

Homology

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BLAST of HG10023425 vs. NCBI nr
Match: XP_038898414.1 (nuclear pore complex protein NUP107 [Benincasa hispida])

HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103
Identity = 198/206 (96.12%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMDA PSYFDPEDLTIRERFRRYRKRPSNISP KEVSSSTVSESRILYDGQGFHSPT
Sbjct: 1   MDEEMDAFPSYFDPEDLTIRERFRRYRKRPSNISPSKEVSSSTVSESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEAESL GDRLEATPLKESSASKRRLSIDSQEIS VSLGPDSVR+SLKAC
Sbjct: 61  NAALLLENFREEAESLDGDRLEATPLKESSASKRRLSIDSQEISAVSLGPDSVRYSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGD+TY FFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF
Sbjct: 121 KHENDPLSNSGDSTYTFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           IEDKLMRQKAQFLVDEAASWSLLWYL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 206

[Close]

BLAST of HG10023425 vs. NCBI nr
Match: KAA0059381.1 (nuclear pore complex protein NUP107 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 4.3e-103
Identity = 199/228 (87.28%), Postives = 206/228 (90.35%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRSSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEAESL GD LEATPLKESSASKRRLSIDSQEISVVSLGPD VRHSLKAC
Sbjct: 61  NAALLLENFQEEAESLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDLVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYLTKSCSICMHLKFWFTKIFPATT 229
           IEDKLMRQKAQFLVDEAASWSLLWYL    +I   +  +    FP T+
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYLYGKGNISFSITMYKFYFFPPTS 228

[Close]

BLAST of HG10023425 vs. NCBI nr
Match: XP_008462273.1 (PREDICTED: nuclear pore complex protein NUP107 isoform X1 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 3.7e-102
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRLSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEA+SL GD LEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC
Sbjct: 61  NAALLLENFQEEAKSLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           IEDKLMRQKAQFLVDEAASWSLLWYL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 206

[Close]

BLAST of HG10023425 vs. NCBI nr
Match: XP_008462274.1 (PREDICTED: nuclear pore complex protein NUP107 isoform X2 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 3.7e-102
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRLSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEA+SL GD LEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC
Sbjct: 61  NAALLLENFQEEAKSLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           IEDKLMRQKAQFLVDEAASWSLLWYL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 206

[Close]

BLAST of HG10023425 vs. NCBI nr
Match: TYK03945.1 (nuclear pore complex protein NUP107 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 7.7e-100
Identity = 192/203 (94.58%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRSSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEAESL GD LEATPLKESSASKRRLSIDSQEISVVSLGPD VRHSLKAC
Sbjct: 61  NAALLLENFQEEAESLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDLVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLL 204
           IEDKLMRQKAQFLVDEAASWSLL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLL 203

[Close]

BLAST of HG10023425 vs. ExPASy Swiss-Prot
Match: Q8L748 (Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana OX=3702 GN=NUP107 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-62
Identity = 129/206 (62.62%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MD +MD SPSYFDPE L++R++FRRYRKR S  SPH+E+ SS VSE+R+LYDG   HSPT
Sbjct: 1   MDMDMDTSPSYFDPEALSVRDQFRRYRKRHST-SPHEEMLSSNVSENRLLYDGHNIHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           N ALLLEN KEE ++ + D  E TP    SAS RR S+        +L       SLKAC
Sbjct: 61  NTALLLENIKEEVDNFHTDHYEGTPTNPISAS-RRESVGILNDDDEALFRRVESQSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           K END L+ SGDTT+  FASL DS++QGLMSIP+L+LR E SCRNVS+SIRYGS+I+HR 
Sbjct: 121 KIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIRHRA 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           +EDKLMRQKAQ L+ EAASWSLLW L
Sbjct: 181 VEDKLMRQKAQLLLGEAASWSLLWNL 204

[Close]

BLAST of HG10023425 vs. ExPASy TrEMBL
Match: A0A5A7V0Y0 (Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G001070 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.1e-103
Identity = 199/228 (87.28%), Postives = 206/228 (90.35%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRSSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEAESL GD LEATPLKESSASKRRLSIDSQEISVVSLGPD VRHSLKAC
Sbjct: 61  NAALLLENFQEEAESLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDLVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYLTKSCSICMHLKFWFTKIFPATT 229
           IEDKLMRQKAQFLVDEAASWSLLWYL    +I   +  +    FP T+
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYLYGKGNISFSITMYKFYFFPPTS 228

[Close]

BLAST of HG10023425 vs. ExPASy TrEMBL
Match: A0A1S3CGK5 (Nuclear pore complex protein OS=Cucumis melo OX=3656 GN=LOC103500671 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.8e-102
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRLSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEA+SL GD LEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC
Sbjct: 61  NAALLLENFQEEAKSLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           IEDKLMRQKAQFLVDEAASWSLLWYL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 206

[Close]

BLAST of HG10023425 vs. ExPASy TrEMBL
Match: A0A1S3CGL8 (Nuclear pore complex protein OS=Cucumis melo OX=3656 GN=LOC103500671 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.8e-102
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRLSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEA+SL GD LEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC
Sbjct: 61  NAALLLENFQEEAKSLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           IEDKLMRQKAQFLVDEAASWSLLWYL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 206

[Close]

BLAST of HG10023425 vs. ExPASy TrEMBL
Match: A0A0A0K7P5 (Nuclear pore complex protein OS=Cucumis sativus OX=3659 GN=Csa_7G448790 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 2.2e-100
Identity = 199/249 (79.92%), Postives = 208/249 (83.53%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEV  ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRSSNISPHKEVIPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEAESL GD LEATPLKESSASKRRLSIDSQEISVVSLGPDSVR SLKAC
Sbjct: 61  NAALLLENFQEEAESLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRLSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           +HENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 RHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYLTKSCSICMHL---KFWFTKIFPATTFFMGVKPAR 240
           IEDKLMRQKAQ LVDEAASWSLLWYL    +I   +   KF+F  +     F        
Sbjct: 181 IEDKLMRQKAQLLVDEAASWSLLWYLYGKGNISFSITIYKFYFVFMSTNMCFLFHASTKE 240

Query: 241 LPDMFLKLP 247
            P   +  P
Sbjct: 241 TPKDLIVFP 249

[Close]

BLAST of HG10023425 vs. ExPASy TrEMBL
Match: A0A5D3BXS6 (Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001420 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.7e-100
Identity = 192/203 (94.58%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MDEEMD SPSYFDPEDLTIRERFRRYRKR SNISPHKEVS ST++ESRILYDGQGFHSPT
Sbjct: 1   MDEEMDVSPSYFDPEDLTIRERFRRYRKRSSNISPHKEVSPSTINESRILYDGQGFHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           NAALLLENF+EEAESL GD LEATPLKESSASKRRLSIDSQEISVVSLGPD VRHSLKAC
Sbjct: 61  NAALLLENFQEEAESLVGDCLEATPLKESSASKRRLSIDSQEISVVSLGPDLVRHSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCR VSESIRYGSN QHRF
Sbjct: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRIVSESIRYGSNTQHRF 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLL 204
           IEDKLMRQKAQFLVDEAASWSLL
Sbjct: 181 IEDKLMRQKAQFLVDEAASWSLL 203

[Close]

BLAST of HG10023425 vs. TAIR 10
Match: AT3G14120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink). )

HSP 1 Score: 241.1 bits (614), Expect = 9.4e-64
Identity = 129/206 (62.62%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MD +MD SPSYFDPE L++R++FRRYRKR S  SPH+E+ SS VSE+R+LYDG   HSPT
Sbjct: 1   MDMDMDTSPSYFDPEALSVRDQFRRYRKRHST-SPHEEMLSSNVSENRLLYDGHNIHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           N ALLLEN KEE ++ + D  E TP    SAS RR S+        +L       SLKAC
Sbjct: 61  NTALLLENIKEEVDNFHTDHYEGTPTNPISAS-RRESVGILNDDDEALFRRVESQSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           K END L+ SGDTT+  FASL DS++QGLMSIP+L+LR E SCRNVS+SIRYGS+I+HR 
Sbjct: 121 KIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIRHRA 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           +EDKLMRQKAQ L+ EAASWSLLW L
Sbjct: 181 VEDKLMRQKAQLLLGEAASWSLLWNL 204

[Close]

BLAST of HG10023425 vs. TAIR 10
Match: AT3G14120.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 271 Blast hits to 268 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 69; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 241.1 bits (614), Expect = 9.4e-64
Identity = 129/206 (62.62%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MD +MD SPSYFDPE L++R++FRRYRKR S  SPH+E+ SS VSE+R+LYDG   HSPT
Sbjct: 1   MDMDMDTSPSYFDPEALSVRDQFRRYRKRHST-SPHEEMLSSNVSENRLLYDGHNIHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           N ALLLEN KEE ++ + D  E TP    SAS RR S+        +L       SLKAC
Sbjct: 61  NTALLLENIKEEVDNFHTDHYEGTPTNPISAS-RRESVGILNDDDEALFRRVESQSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           K END L+ SGDTT+  FASL DS++QGLMSIP+L+LR E SCRNVS+SIRYGS+I+HR 
Sbjct: 121 KIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIRHRA 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           +EDKLMRQKAQ L+ EAASWSLLW L
Sbjct: 181 VEDKLMRQKAQLLLGEAASWSLLWNL 204

[Close]

BLAST of HG10023425 vs. TAIR 10
Match: AT3G14120.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252). )

HSP 1 Score: 241.1 bits (614), Expect = 9.4e-64
Identity = 129/206 (62.62%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 1   MDEEMDASPSYFDPEDLTIRERFRRYRKRPSNISPHKEVSSSTVSESRILYDGQGFHSPT 60
           MD +MD SPSYFDPE L++R++FRRYRKR S  SPH+E+ SS VSE+R+LYDG   HSPT
Sbjct: 1   MDMDMDTSPSYFDPEALSVRDQFRRYRKRHST-SPHEEMLSSNVSENRLLYDGHNIHSPT 60

Query: 61  NAALLLENFKEEAESLYGDRLEATPLKESSASKRRLSIDSQEISVVSLGPDSVRHSLKAC 120
           N ALLLEN KEE ++ + D  E TP    SAS RR S+        +L       SLKAC
Sbjct: 61  NTALLLENIKEEVDNFHTDHYEGTPTNPISAS-RRESVGILNDDDEALFRRVESQSLKAC 120

Query: 121 KHENDPLSNSGDTTYNFFASLMDSSIQGLMSIPDLILRFESSCRNVSESIRYGSNIQHRF 180
           K END L+ SGDTT+  FASL DS++QGLMSIP+L+LR E SCRNVS+SIRYGS+I+HR 
Sbjct: 121 KIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIRHRA 180

Query: 181 IEDKLMRQKAQFLVDEAASWSLLWYL 207
           +EDKLMRQKAQ L+ EAASWSLLW L
Sbjct: 181 VEDKLMRQKAQLLLGEAASWSLLWNL 204

The following BLAST results are available for this feature:

BLAST of HG10023425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898414.1	1.1e-103	96.12	nuclear pore complex protein NUP107 [Benincasa hispida]	[more]
KAA0059381.1	4.3e-103	87.28	nuclear pore complex protein NUP107 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008462273.1	3.7e-102	94.66	PREDICTED: nuclear pore complex protein NUP107 isoform X1 [Cucumis melo]	[more]
XP_008462274.1	3.7e-102	94.66	PREDICTED: nuclear pore complex protein NUP107 isoform X2 [Cucumis melo]	[more]
TYK03945.1	7.7e-100	94.58	nuclear pore complex protein NUP107 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of HG10023425 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L748	1.3e-62	62.62	Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana OX=3702 GN=NUP107 PE...	[more]

BLAST of HG10023425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0Y0	2.1e-103	87.28	Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3CGK5	1.8e-102	94.66	Nuclear pore complex protein OS=Cucumis melo OX=3656 GN=LOC103500671 PE=3 SV=1	[more]
A0A1S3CGL8	1.8e-102	94.66	Nuclear pore complex protein OS=Cucumis melo OX=3656 GN=LOC103500671 PE=3 SV=1	[more]
A0A0A0K7P5	2.2e-100	79.92	Nuclear pore complex protein OS=Cucumis sativus OX=3659 GN=Csa_7G448790 PE=3 SV=...	[more]
A0A5D3BXS6	3.7e-100	94.58	Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of HG10023425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14120.1	9.4e-64	62.62	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nu...	[more]
AT3G14120.2	9.4e-64	62.62	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nu...	[more]
AT3G14120.3	9.4e-64	62.62	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nu...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007252	Nuclear pore protein 84/107	PANTHER	PTHR13003	NUP107-RELATED	coord: 1..206
None	No IPR available	PANTHER	PTHR13003:SF3	NUCLEAR PORE COMPLEX PROTEIN	coord: 1..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023425.1	HG10023425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0031080	nuclear pore outer ring
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0017056	structural constituent of nuclear pore