HG10023386 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023386
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Methionyl-tRNA synthetase
Location	Chr05: 33657978 .. 33658205 (+)
RNA-Seq Expression	HG10023386
Synteny	HG10023386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGACTCCAATATTCGACGTGAAAGAGAAGATAATTGGAAAGAAAGGGATTAAAGCAGCTTGTCCATATTGTAGCGGCCCAGTTATTGCTTGGGATATGGATGTCCGTTGCTCCTTCTGCTTCTTCCTTCTTTCTCATAAAAACCAAACCCAACTCTACTGTGCTCTCTGCTCCACACGCCTCGTTTATTCCTCCAAAAAACCCTTATCTAATTCTTCTTGA

mRNA sequence

ATGGGGTTGACTCCAATATTCGACGTGAAAGAGAAGATAATTGGAAAGAAAGGGATTAAAGCAGCTTGTCCATATTGTAGCGGCCCAGTTATTGCTTGGGATATGGATGTCCGTTGCTCCTTCTGCTTCTTCCTTCTTTCTCATAAAAACCAAACCCAACTCTACTGTGCTCTCTGCTCCACACGCCTCGTTTATTCCTCCAAAAAACCCTTATCTAATTCTTCTTGA

Coding sequence (CDS)

ATGGGGTTGACTCCAATATTCGACGTGAAAGAGAAGATAATTGGAAAGAAAGGGATTAAAGCAGCTTGTCCATATTGTAGCGGCCCAGTTATTGCTTGGGATATGGATGTCCGTTGCTCCTTCTGCTTCTTCCTTCTTTCTCATAAAAACCAAACCCAACTCTACTGTGCTCTCTGCTCCACACGCCTCGTTTATTCCTCCAAAAAACCCTTATCTAATTCTTCTTGA

Protein sequence

MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCSTRLVYSSKKPLSNSS

Homology

[Close]

BLAST of HG10023386 vs. NCBI nr
Match: RXH89041.1 (hypothetical protein DVH24_000640 [Malus domestica])

HSP 1 Score: 90.5 bits (223), Expect = 6.6e-15
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 3   LTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCSTR 62
           L P+FD++EK++GKKG  AACPYC GPV+ WD D    FCF  +SHK + + YC +CS+R
Sbjct: 433 LVPVFDLREKVVGKKGAAAACPYCGGPVMGWDFDAHLLFCFIPISHKTKRKFYCTICSSR 492

Query: 63  L 64
           L
Sbjct: 493 L 493

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BLAST of HG10023386 vs. NCBI nr
Match: EXC44892.1 (hypothetical protein L484_001138 [Morus notabilis])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHK-NQTQLYCALC 60
          MG   +F+++EK+IGK+G  AACPYC GPV+AWD D    FCF  +SHK  +T+ YC +C
Sbjct: 1  MGALAVFNLQEKVIGKRGAGAACPYCGGPVLAWDFDAHLLFCFIPISHKTKKTKFYCTIC 60

Query: 61 STRLVYSSK 69
          STRLV ++K
Sbjct: 61 STRLVPAAK 69

[Close]

BLAST of HG10023386 vs. NCBI nr
Match: KAB2613256.1 (hypothetical protein D8674_035572 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M +  +FD++EK++GKKG  AACPYC GPV+ WD D    FCF  +SHK + + YC +CS
Sbjct: 1  MSVLSVFDLREKVVGKKGAAAACPYCGGPVMGWDFDAHLLFCFIPISHKTKRKFYCTICS 60

Query: 61 TRLV 65
          +RLV
Sbjct: 61 SRLV 64

[Close]

BLAST of HG10023386 vs. NCBI nr
Match: ONI14975.1 (hypothetical protein PRUPE_3G019100 [Prunus persica])

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-14
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M +  +FD++EK++GK+G  A CPYC GPV+AWD D    FCF  +SHK + + YC +CS
Sbjct: 1  MSVLSVFDLREKVVGKRGAPAVCPYCGGPVLAWDFDAHLLFCFISISHKTKRKFYCTICS 60

Query: 61 TRLVYSS 68
           RLV +S
Sbjct: 61 RRLVPAS 67

[Close]

BLAST of HG10023386 vs. NCBI nr
Match: CAB4271994.1 (unnamed protein product [Prunus armeniaca] >CAB4302535.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M +  +FD++EK++GK+G   ACPYC GPV+AWD D    FCF  +SHK + + YC +CS
Sbjct: 1  MSVLSVFDLREKVVGKRGAATACPYCGGPVLAWDFDAHLLFCFIPISHKTKRKFYCTICS 60

Query: 61 TRLVYSS 68
           RLV +S
Sbjct: 61 RRLVPAS 67

[Close]

BLAST of HG10023386 vs. ExPASy TrEMBL
Match: A0A498J6G4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000640 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 3   LTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCSTR 62
           L P+FD++EK++GKKG  AACPYC GPV+ WD D    FCF  +SHK + + YC +CS+R
Sbjct: 433 LVPVFDLREKVVGKKGAAAACPYCGGPVMGWDFDAHLLFCFIPISHKTKRKFYCTICSSR 492

Query: 63  L 64
           L
Sbjct: 493 L 493

[Close]

BLAST of HG10023386 vs. ExPASy TrEMBL
Match: W9SEJ6 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001138 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.5e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHK-NQTQLYCALC 60
          MG   +F+++EK+IGK+G  AACPYC GPV+AWD D    FCF  +SHK  +T+ YC +C
Sbjct: 1  MGALAVFNLQEKVIGKRGAGAACPYCGGPVLAWDFDAHLLFCFIPISHKTKKTKFYCTIC 60

Query: 61 STRLVYSSK 69
          STRLV ++K
Sbjct: 61 STRLVPAAK 69

[Close]

BLAST of HG10023386 vs. ExPASy TrEMBL
Match: A0A5N5GCS6 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_035572 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.1e-15
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M +  +FD++EK++GKKG  AACPYC GPV+ WD D    FCF  +SHK + + YC +CS
Sbjct: 1  MSVLSVFDLREKVVGKKGAAAACPYCGGPVMGWDFDAHLLFCFIPISHKTKRKFYCTICS 60

Query: 61 TRLV 65
          +RLV
Sbjct: 61 SRLV 64

[Close]

BLAST of HG10023386 vs. ExPASy TrEMBL
Match: M5WY77 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G019100 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M +  +FD++EK++GK+G  A CPYC GPV+AWD D    FCF  +SHK + + YC +CS
Sbjct: 1  MSVLSVFDLREKVVGKRGAPAVCPYCGGPVLAWDFDAHLLFCFISISHKTKRKFYCTICS 60

Query: 61 TRLVYSS 68
           RLV +S
Sbjct: 61 RRLVPAS 67

[Close]

BLAST of HG10023386 vs. ExPASy TrEMBL
Match: A0A6J5U9D5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS18473 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M +  +FD++EK++GK+G   ACPYC GPV+AWD D    FCF  +SHK + + YC +CS
Sbjct: 1  MSVLSVFDLREKVVGKRGAATACPYCGGPVLAWDFDAHLLFCFIPISHKTKRKFYCTICS 60

Query: 61 TRLVYSS 68
           RLV +S
Sbjct: 61 RRLVPAS 67

[Close]

BLAST of HG10023386 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 1  MGLTPIFDVKEKIIGKKGIKAACPYCSGPVIAWDMDVRCSFCFFLLSHKNQTQLYCALCS 60
          M L  + D  E++IG+     ACPYC G V   D++ +  FCF  LS+K++ +  C+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 TRLV 65
           RL+
Sbjct: 61 KRLI 64

The following BLAST results are available for this feature:

BLAST of HG10023386 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH89041.1	6.6e-15	55.74	hypothetical protein DVH24_000640 [Malus domestica]	[more]
EXC44892.1	1.1e-14	55.07	hypothetical protein L484_001138 [Morus notabilis]	[more]
KAB2613256.1	1.5e-14	53.13	hypothetical protein D8674_035572 [Pyrus ussuriensis x Pyrus communis]	[more]
ONI14975.1	2.5e-14	50.75	hypothetical protein PRUPE_3G019100 [Prunus persica]	[more]
CAB4271994.1	3.3e-14	50.75	unnamed protein product [Prunus armeniaca] >CAB4302535.1 unnamed protein product...	[more]

BLAST of HG10023386 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498J6G4	3.2e-15	55.74	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000640 PE=4 SV=1	[more]
W9SEJ6	5.5e-15	55.07	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001138 PE=4 SV=1	[more]
A0A5N5GCS6	7.1e-15	53.13	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
M5WY77	1.2e-14	50.75	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G019100 PE=4 SV=1	[more]
A0A6J5U9D5	1.6e-14	50.75	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS18473 PE=4 S...	[more]

BLAST of HG10023386 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10695.1	1.1e-07	37.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 1..66
None	No IPR available	PANTHER	PTHR33320:SF10	SUBFAMILY NOT NAMED	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023386.1	HG10023386.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane