HG10023339 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023339
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionserine-rich protein-related
LocationChr05: 33206620 .. 33207004 (+)
RNA-Seq ExpressionHG10023339
SyntenyHG10023339
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATCCAGCCGTTCCCCTTCACAGAGCCACCGCCTTCCGCTTTGCCGGCCCCGGAAGGCCGCTTGTAGCGGCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGGTGGTGGAAACAAGTGTATTTGCTCGCCGACGACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCGAGGTTTTCAAAACCCAACACGGTTTAACCTTTGTGTATATATATATATATACAAAACTTATATATAGGTGAAATTAGAAATATGTGAATTGACTCTGTTTTTTAAATTAAATAGGCTGCAACTTGATTTAATGTGTTGTGATGTTTTGGTTCAGAATTGTGTTGAAATTAAGTGA

mRNA sequence

ATGTGTTATCCAGCCGTTCCCCTTCACAGAGCCACCGCCTTCCGCTTTGCCGGCCCCGGAAGGCCGCTTGTAGCGGCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGGTGGTGGAAACAAGTGTATTTGCTCGCCGACGACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAGGAGATTATAAATGGAATTGTGTTGAAATTAAGTGA

Coding sequence (CDS)

ATGTGTTATCCAGCCGTTCCCCTTCACAGAGCCACCGCCTTCCGCTTTGCCGGCCCCGGAAGGCCGCTTGTAGCGGCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGGTGGTGGAAACAAGTGTATTTGCTCGCCGACGACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAGGAGATTATAAATGGAATTGTGTTGAAATTAAGTGA

Protein sequence

MCYPAVPLHRATAFRFAGPGRPLVAAAQEVVRQQKSGGGGGNKCICSPTTHPGSFRCRFHQGDYKWNCVEIK
Homology
BLAST of HG10023339 vs. NCBI nr
Match: KGN45357.1 (hypothetical protein Csa_016243 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MCYPAVPLHRATAFRFAGPGRPLVAAAQEVVRQQKSGGGGGNKCICSPTTHPGSFRCRFH 60
          MCYP +P HR TAF FA  GR +VAA +E VRQQ+S  GGG KCICSPTTHPGSF+CRFH
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRS--GGGYKCICSPTTHPGSFKCRFH 60

Query: 61 QGDYKW 67
          QGDYKW
Sbjct: 61 QGDYKW 64

BLAST of HG10023339 vs. NCBI nr
Match: KAF8393354.1 (hypothetical protein HHK36_021597 [Tetracentron sinense])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 1   MCYPAVPLHRATAFR-FAGPGR------PLVA-------AAQEVVRQQKSGGGGGNKCIC 60
           MC+P +P   + +FR FA  GR      PLV         AQ VV    SGGG   +C+C
Sbjct: 618 MCHPGLP---SVSFREFAMQGRWFALQAPLVVEAVAVAPGAQTVVVGAASGGGSSKQCLC 677

Query: 61  SPTTHPGSFRCRFHQGDYKW 67
           +PT HPGSFRCR H G+Y+W
Sbjct: 678 APTRHPGSFRCRHHHGEYEW 694

BLAST of HG10023339 vs. NCBI nr
Match: XP_022846371.1 (uncharacterized protein LOC111369102 [Olea europaea var. sylvestris] >CAA2987260.1 Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 36/88 (40.91%), Postives = 45/88 (51.14%), Query Frame = 0

Query: 1  MCYPAVPLHRATAFRFAGPGRPLV---------AAAQEVVRQQKS-------------GG 60
          MCYP    +    +  AGP R +V         AA  EV RQQ++             GG
Sbjct: 1  MCYPGA--YWVCQYSPAGPRRVVVSPVTPPPPSAAVVEVARQQETVTTAEANGGSGGVGG 60

Query: 61 GGGNKCICSPTTHPGSFRCRFHQGDYKW 67
          GG  +C+CSPT HPGSFRCR H  +Y+W
Sbjct: 61 GGMRRCVCSPTNHPGSFRCRHHHAEYEW 86

BLAST of HG10023339 vs. NCBI nr
Match: KAG5537670.1 (hypothetical protein RHGRI_024950 [Rhododendron griersonianum])

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-07
Identity = 30/60 (50.00%), Postives = 34/60 (56.67%), Query Frame = 0

Query: 21 RPLVAAAQEVVRQQ----------KSGGGGG--NKCICSPTTHPGSFRCRFHQGDYKWNC 69
          RP+    + VV QQ            GGGGG   KC+CSPT HPGSFRCR H  DY+W C
Sbjct: 14 RPVRRVEEMVVNQQAPIEQSGVATSEGGGGGEVKKCVCSPTRHPGSFRCRHHHADYEWGC 73

BLAST of HG10023339 vs. NCBI nr
Match: KAG8656900.1 (hypothetical protein MANES_03G019500v8 [Manihot esculenta])

HSP 1 Score: 63.9 bits (154), Expect = 6.4e-07
Identity = 37/76 (48.68%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 1  MCYPAVPL--HRATAFRFAGPGRPLVAAAQEV-----VRQQKSGGGGG---NKCICSPTT 60
          MCY  +P   H  TA       R LV  A E       R + SGG GG    KC+CSPT 
Sbjct: 1  MCYSVMPFVTHARTA---EEEQRWLVFQAVETTGAEPARTETSGGDGGGSMKKCVCSPTR 60

Query: 61 HPGSFRCRFHQGDYKW 67
          HPGSFRCR H GDY+W
Sbjct: 61 HPGSFRCRHHHGDYEW 73

BLAST of HG10023339 vs. ExPASy TrEMBL
Match: A0A0A0KAE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.9e-22
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MCYPAVPLHRATAFRFAGPGRPLVAAAQEVVRQQKSGGGGGNKCICSPTTHPGSFRCRFH 60
          MCYP +P HR TAF FA  GR +VAA +E VRQQ+S  GGG KCICSPTTHPGSF+CRFH
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRS--GGGYKCICSPTTHPGSFKCRFH 60

Query: 61 QGDYKW 67
          QGDYKW
Sbjct: 61 QGDYKW 64

BLAST of HG10023339 vs. ExPASy TrEMBL
Match: A0A2C9W3Q9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 37/76 (48.68%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 1  MCYPAVPL--HRATAFRFAGPGRPLVAAAQEV-----VRQQKSGGGGG---NKCICSPTT 60
          MCY  +P   H  TA       R LV  A E       R + SGG GG    KC+CSPT 
Sbjct: 1  MCYSVMPFVTHARTA---EEEQRWLVFQAVETTGAEPARTETSGGDGGGSMKKCVCSPTR 60

Query: 61 HPGSFRCRFHQGDYKW 67
          HPGSFRCR H GDY+W
Sbjct: 61 HPGSFRCRHHHGDYEW 73

BLAST of HG10023339 vs. ExPASy TrEMBL
Match: M1A3Y8 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 31/68 (45.59%), Postives = 35/68 (51.47%), Query Frame = 0

Query: 1  MCYPAVPLHRATAFRFAGPGRPLVAAAQEVV--RQQKSGGGGGNKCICSPTTHPGSFRCR 60
          MCY  +P         A    PL A A+     R   +G G   +CICSPT HPGSFRCR
Sbjct: 1  MCYSGIPYWIDKREHIAREQVPLQATAESSTGSRGVVAGAGMAKQCICSPTIHPGSFRCR 60

Query: 61 FHQGDYKW 67
           H  DYKW
Sbjct: 61 HHHADYKW 68

BLAST of HG10023339 vs. ExPASy TrEMBL
Match: A0A022QBQ3 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a018247mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 34/80 (42.50%), Postives = 42/80 (52.50%), Query Frame = 0

Query: 1  MCYPAVPLHRATAFRFAGPGRPLVAAAQEV-------VRQQKSGGGGG-------NKCIC 60
          MCYP V       ++ A   R L+A A E         RQ+ + GGGG         C+C
Sbjct: 1  MCYPQVAYWEG-GYKCATRRRQLIAPAAEADTEVAVRGRQEANTGGGGGGGGGMTKVCVC 60

Query: 61 SPTTHPGSFRCRFHQGDYKW 67
          SPT HPGSFRCR H G+Y+W
Sbjct: 61 SPTGHPGSFRCRHHHGEYQW 79

BLAST of HG10023339 vs. ExPASy TrEMBL
Match: A0A1R3GJ21 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_34908 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 1  MCYPAVPLHRATAFRFAGPGRPLVAAAQEVVRQQ---KSGGGGGN--KCICSPTTHPGSF 60
          MCY  VP   +   R     R L A+     R+     +GGGGG+  +C+CSPT HPGSF
Sbjct: 1  MCYVTVP---SVGKRGLEVQRLLQASLMAAARRHPATTTGGGGGSMKQCLCSPTKHPGSF 60

Query: 61 RCRFHQGDYKW 67
          RCR HQG+Y W
Sbjct: 61 RCRHHQGEYVW 68

BLAST of HG10023339 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 32 RQQKSGGGGGNKCICSPTTHPGSFRCRFHQGDYKW 67
          R    GGGG  KC+CSP+ HP SF+CR+HQ +Y+W
Sbjct: 38 RSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQW 72

BLAST of HG10023339 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0

Query: 32 RQQKSGGGGG------------NKCICSPTTHPGSFRCRFHQ 62
          R ++ GGGGG              C+C+PTTHPGSFRCR+H+
Sbjct: 41 RVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHR 82

BLAST of HG10023339 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 0

Query: 43 KCICSPTTHPGSFRCRFHQ 62
          KC+CSPTTHPGSFRC FH+
Sbjct: 70 KCLCSPTTHPGSFRCSFHR 88

BLAST of HG10023339 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 6.4e-05
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 0

Query: 44 CICSPTTHPGSFRCRFHQ 62
          C+CSPTTHPGSFRCR H+
Sbjct: 44 CLCSPTTHPGSFRCRIHR 61

BLAST of HG10023339 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 43.9 bits (102), Expect = 6.4e-05
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 0

Query: 44 CICSPTTHPGSFRCRFHQ 62
          C+CSPTTHPGSFRCR H+
Sbjct: 44 CLCSPTTHPGSFRCRIHR 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45357.12.0e-2174.24hypothetical protein Csa_016243 [Cucumis sativus][more]
KAF8393354.15.8e-0846.25hypothetical protein HHK36_021597 [Tetracentron sinense][more]
XP_022846371.11.7e-0740.91uncharacterized protein LOC111369102 [Olea europaea var. sylvestris] >CAA2987260... [more]
KAG5537670.13.7e-0750.00hypothetical protein RHGRI_024950 [Rhododendron griersonianum][more]
KAG8656900.16.4e-0748.68hypothetical protein MANES_03G019500v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAE19.9e-2274.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1[more]
A0A2C9W3Q93.1e-0748.68Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019500 PE=4 SV=... [more]
M1A3Y89.0e-0745.59Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
A0A022QBQ39.0e-0742.50Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a018247mg PE... [more]
A0A1R3GJ211.5e-0646.48Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_34908 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G52342.11.2e-0857.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13227.13.4e-0647.62serine-rich protein-related [more]
AT5G20370.11.3e-0584.21serine-rich protein-related [more]
AT1G67910.16.4e-0583.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G67910.26.4e-0583.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 25..67
NoneNo IPR availablePANTHERPTHR33132:SF72OS01G0778900 PROTEINcoord: 25..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023339.1HG10023339.1mRNA