HG10023299 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023299
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHistone H2A
LocationChr05: 32816136 .. 32820523 (+)
RNA-Seq ExpressionHG10023299
SyntenyHG10023299
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTTCCTCTTGCTTTACACTTCAATACTTCTTTTACTACCTTCTTTTTGTGGGTCTTCTCTGGATCTGTGTTTCTGCTTCTTGTTTCAGGTCTATGCCTCTTTTCCTCCAACAAAGCCACAATTTTAACAATTTAGATGCGTTTCTGTGTTTAGACATTGGGGGGTGGGGAGGTGGGGGTAATTTAAATTTTCTGTTTGAGTGTCTATATTTGTTTATTACAGATGGGTCCTCTTTTTGTTTCCTTGTTTCTTGTTTTTTCGTCTCTATTGAAGAGTATGGTGACTTCTAAGTTTATTTCGTCATGGGTTCTGCTCAGCGGAGTAGAAACAGTATGAGATCGAGTGTTGATGAATCTTTTGGAGGTGTTCGTTTGAGAATCTTTAGAGGGGTAGGTCTAACTCATTCTCTTTGATGTTAGAAGTAGGTGCATGCCTTTGGGTCTGTTCTATTTTGAATGTGTTGCTGTGATCCCCCTTCAATGTTCTTTCGTTGTTGGAGAAATTGTCCTGCGGCCTAGGTTCTTTTGTCGAGGTAATGTCTTGGGTGGAAAGAAAGAATCTGTTGGACTTAAACTTAGGCTGATATTTTGTACTTGTAAGTTTGTAACGTTGGTTGTTGTTAGAAGTATTCCCAAATAAGGTAGGTGCGAGTGTGAGGCATGCATCCAAGATCTTTTTTTCATGCTATAGAAGTTGTCTGTCAAAAGATGTTACAAATGAATATATTGAAGGTGGATCGGGAATTGACCATTTTTATGCCTAGATATTTCACGATCATAATTCAACGGTTCCTAGTTCTCGAAGCATTTAGACAACTTATTCGTTTACATGTTGCATAGTCTCTTTCCTAGAAACTAGGACACTGATCTAACAGTTGTATTGAAAACTTTAAAACATAAAGTACCTATATCATCCTAAGTAATTCGAGAAACTAAGGACAATGCTAGCTTAACCACCGTAAACCAATAGGTATATTTTATCTTAGTGGGATAGAAATACACATAATACTCAAGGTGGGTTAGATCAATAGGTTCTCGTGTTGAAAAATTTTAAAAACGTATATGGAGCACAATCAAAAGTGGCAATATGTTTTCCCTTTTCCACTCTTTTGTTTCGAAATTCAAGTCACTCCTCAGGTCCATGGGTACACTCCTAGAGATTTAAAACCTAGTTAGCTGTTGCAAATAATCTGTAACAAAAAGCTCAGTTCATAGCTCAGTTTGTGTAACACATGACCCTAGAACTCATCACAACCATGATACTTGAATATTTACTTCTATTGGTGGAAAATGAGTCTCAGCAATTCTGTTAAAATTCGGCCTGTGGAGACATGGTTGGGTCCCAAATATCACAAATCAAGACCCAACTAAATAGCGACCATTAGCTCGTGCCCTTGCTACAGCATCAATGATGTTTTGGCTAGCTGTCTTCCTGCTTTTTCCCCCTCCGTTGCGCTATAATACGAATCTCTCTGAAACTTGCAAGTTATGCACTCAGTTCAATCAAAGGAAGGGTTTCTGTGACCTCTCTTCCTTTATGATTTTAGTTCCAAACATGCCTATGTCACTTGGCGTAGACATCCATTAGATCCGTTCTCATTTTCACCGACCATTTGTCTTGCTTCTATTGCATTCCTTTTTTCACCACGTGTGCTCAATTGAACACCCGTTCCCTGCCACTTCACCCCTCTTGCCTCCATTGTTGCTAGATGGTATGAATCTCTATTTTCCTTGCTTGGCATGTGCGGTTTTTTAACTCTTTCATATGAAGGAGGATTTTATTATGAAAAGGAAAATTTTCTCTTGAATTTGATTTGAGCAAGACATGATCACCCTATAAGTTACTCTTCTGTTAGGTGGCTTCTTTGGCCATCTTGTGGACAATCTTGCTCTAAGGGAACTCCGGAGACAAGAAATTTTAAGGTAAGAGGGGTCTTAGGGAGGAGGCATGGATCCTAGCTCGTGCTTCCGTTTGGGCCATCTTCTTATTCTTTGTTTTGTAGCTCTTAATATGGGTGGGGAATAAATTGTCTAGAGACGTTTGTCGTGATATAAGTAAACGTGGTGGATTTTATCACTGCAGAAAATTTTTCTTTCAAGTTTCAATCAGGTGAGGAACCCCATGGTCTAAATTGAGTGCCCCAGTTGAAATATTACGAGATACTTTTATTTTGCTTTGATAATGAAGTTAAGCATTAAGAGAATTTCAGAGTATATTCAATAGTTGCAGGAACTTTGTTAGATTAGGGGATGGCCAGATGGGTTACTCATTTTCAGGCAATAATTGCTGGTATTTTCTGTCTGGAACATACTCTAATTCTTTCATGCAAACCTTTTTCTTCGGCTACATTTACTTTAAATGACCTCTTGGGGGTAGCCAGAATTTTTGTGAACCTAGCAACTGACGAAAATGTGGAAAGTCATGGTAATTGAAATTTATCTCTCTCAAAATAGAAATGGAGATGCAGCCTGTTTTAACCAATATGCTTGTACACGGCCTCTTTTTATAAATTCTCTACCACCAGAGTGTTGATTGAAAAAGATATCTGGAACTTTTAATGGGGAGGTCTATATCTGGATGGAGAAAATTGTCTCCTATTCCTATGGACTTGGGTGGTCTTGGAATTGGAATTTTGAGTTCGGAAAATACAGCCTCGATTTGTAAAGGCTGTGAAGATATTTGATAGATTAACTCTCTAATTGTGGCATCAGATGGTTGATAAATATAACCAGAAATCTTTTGGGTAGTTTATTAACAACTAACAACAGGGGTGTACTAGAAGTTGTTGGTCATAAGTCATAAAAAAAACTATATACGATTATTCACACCGGCCTAGAATGCTAGTGGTGATTGAAGCATCAGAAGTTCTGTATGGAAAATTGGATCAAATGATGAAACGACATTTCTAAATTTTAAAGACTGTACATGTCAAAACATTGATTGTAGTCATACCATGTATTAATGAGGTGAATGATGAGGATTTGGGGATTGGACTAAGATTATATAACTTCAGTTGGTATGGAATTTTAGAATCGATGACTACCCCATCCTTTCTTCACCCTTAGGGTTTCCTCTGTAGCATAACCCAGACGTGAGAATTTTGCAGATTGGAAAAGTCCGGGAATTTTGATTTTCTTTTGGTAAGTTCAGTTGATAATCAAGTGCCTTTTGAATGGTCTTGACTTGAGTATGTACAACCCTTCCTTCCCTGAACTCCTTGTTTTTACGCCGTGGGAAAATCATCACTTAAGTATCATGTAAATAAGGAATCCTGACACTGGGCTATTTCCTGTCTCGTGGTGTCTGTTTAGCAATTGGTAAAGTGAAAACCTGGAACATGTTTTATAGGAAAGCACGTTTTTGTATAGTCATTCCTGTTGAAGCTCTCTTTTTCTTTTTTTTTTTTTCTGCTGGTAATTTCACATTCTAATGAGGAAGGAGCAATTGTTCCATATTTACATATATGCTGTATCTATCTTGTTATGCCTTAAATGAATTTTGCCACCCATTTTTTCTTGCTTCCCTTTTGTTCTCTTCTTAAATCTATTTTTTCCCATCTGATCAATATACAACTTATCATGGACTAGGTGGATAAAATGTCACTGGTAAAGATGAGTATGTGATTTTTGTAAATTTTTTAATGTATAAACTGATGCTCTCGTAGATGCCTTAATTCTCTAGCGCTTCTTGCTGTATATTTTCTGAACTACTAGCTTCTCATTTTCCATGTACATTTTTGTGTTGATAGTTTCTTCTGCTCTGTATTAGTTGATTCCTTTTTAGTACTACTACAAAAATTTTGCCGCGGATCGTGGAGTATTTCACCTGAGATTTTATTGCAAATCAGTGTCTTTGAGATGACTTTGTATCATTTTTATGTGAAGTAATTTTTATGGAAAAAAGATAAGTAGCATTTAGAATGCTTTGGGGTGTTATTCAAATTTTCACATTTTCTCATTGTTGGATGGCTGGATGATGCAGTTTCCAGTGGGAAGGGTCCACCGGCAACTGAAGTCAAGGGTTGCTGCAAACGGACGGGTTGGTGCCACAGCAGCCGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCTGGGAATGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

mRNA sequence

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTCCACCGGCAACTGAAGTCAAGGGTTGCTGCAAACGGACGGGTTGGTGCCACAGCAGCCGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCTGGGAATGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTCCACCGGCAACTGAAGTCAAGGGTTGCTGCAAACGGACGGGTTGGTGCCACAGCAGCCGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCTGGGAATGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Protein sequence

MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Homology
[Close]
BLAST of HG10023299 vs. NCBI nr
Match: XP_022152569.1 (probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable histone H2A variant 3 [Rhodamnia argentea] >XP_038899732.1 probable histone H2A variant 3 [Benincasa hispida] >KAF8011693.1 hypothetical protein BT93_J2080 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 253.8 bits (647), Expect = 8.1e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. NCBI nr
Match: XP_022953233.1 (probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable histone H2A variant 3 [Cucurbita moschata] >XP_022991416.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023004192.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023513932.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >XP_023548701.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >KAG6593413.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014117.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7025761.1 putative histone H2A variant 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. NCBI nr
Match: XP_004135834.1 (probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PREDICTED: probable histone H2A variant 3 [Cucumis melo] >KAA0058784.1 putative histone H2A variant 3 [Cucumis melo var. makuwa] >KGN45310.1 hypothetical protein Csa_015723 [Cucumis sativus] >TYK10578.1 putative histone H2A variant 3 [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. NCBI nr
Match: XP_010033915.1 (probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable histone H2A variant 3 [Syzygium oleosum] >KCW53786.1 hypothetical protein EUGRSUZ_J03033 [Eucalyptus grandis])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. NCBI nr
Match: XP_031406453.1 (probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protein CDL15_Pgr007850 [Punica granatum] >PKI43477.1 hypothetical protein CRG98_036234 [Punica granatum])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA  NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSA--NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 132

[Close]
BLAST of HG10023299 vs. ExPASy Swiss-Prot
Match: Q9C944 (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.6e-60
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LK+R  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of HG10023299 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.0e-58
Identity = 115/136 (84.56%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLK+RV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of HG10023299 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.9e-57
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKS----ASNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKSRVAANGR 60
           M+GKG KGL+  K+    A+ +KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 135
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of HG10023299 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 119/138 (86.23%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKSRVAANGRV 60
           M+GKG KGL+  K+    S +KDKDKKK PVSRSSRAGLQFPVGR+HRQLKSR +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 135
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of HG10023299 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVG 60
           M+GKG KGL+  K+    S  KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 135
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of HG10023299 vs. ExPASy TrEMBL
Match: A0A6J1DGE3 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. ExPASy TrEMBL
Match: A0A6J1JQN2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. ExPASy TrEMBL
Match: A0A6J1GMV1 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. ExPASy TrEMBL
Match: A0A5D3CH66 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. ExPASy TrEMBL
Match: A0A0A0K6F6 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of HG10023299 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-61
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LK+R  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of HG10023299 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 224.2 bits (570), Expect = 6.4e-59
Identity = 115/136 (84.56%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLK+RV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of HG10023299 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 214.5 bits (545), Expect = 5.1e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of HG10023299 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 214.5 bits (545), Expect = 5.1e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of HG10023299 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 214.5 bits (545), Expect = 5.1e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

The following BLAST results are available for this feature:
BLAST of HG10023299 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152569.18.1e-64100.00probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable hi... [more]
XP_022953233.11.8e-6399.25probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable his... [more]
XP_004135834.11.8e-6399.25probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PRED... [more]
XP_010033915.13.1e-6399.25probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable his... [more]
XP_031406453.12.9e-6198.51probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protei... [more]
BLAST of HG10023299 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9445.6e-6089.55Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1... [more]
O236289.0e-5884.56Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q8S8579.9e-5784.89Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
Q8H7Y81.3e-5686.23Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q84MP71.3e-5686.13Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
BLAST of HG10023299 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DGE33.9e-64100.00Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1[more]
A0A6J1JQN28.7e-6499.25Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1[more]
A0A6J1GMV18.7e-6499.25Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1[more]
A0A5D3CH668.7e-6499.25Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 P... [more]
A0A0A0K6F68.7e-6499.25Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1[more]
BLAST of HG10023299 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52740.14.0e-6189.55histone H2A protein 9 [more]
AT3G54560.16.4e-5984.56histone H2A 11 [more]
AT2G38810.15.1e-5682.35histone H2A 8 [more]
AT2G38810.35.1e-5682.35histone H2A 8 [more]
AT2G38810.25.1e-5682.35histone H2A 8 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 70..83
score: 84.63
coord: 55..70
score: 71.55
coord: 111..129
score: 51.98
coord: 25..47
score: 73.0
coord: 84..98
score: 65.78
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
e-value: 4.2E-69
score: 245.6
IPR002119Histone H2ACDDcd00074H2Acoord: 26..130
e-value: 1.92273E-55
score: 167.127
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 18..103
e-value: 6.3E-20
score: 71.9
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 104..133
e-value: 8.1E-11
score: 41.5
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 13..134
e-value: 2.0E-56
score: 191.2
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 4..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR23430:SF300HISTONE H2Acoord: 2..132
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..132
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 33..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023299.1HG10023299.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009266 response to temperature stimulus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity