HG10023297 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023297
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 32805815 .. 32805967 (+)
RNA-Seq Expression	HG10023297
Synteny	HG10023297

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGCTTCTCATTATTGCAGGAAAGCTTCATGCCGGAGTCCGCGGCTGATGCTGGTAAAGAGAGGATTTTCCCCGCGTGCTTTTACACAGGCAACGTGCTTCCTTTTCCACCACTGCTTATAAATTTCTTAGTCATAGAATCGAATAGATGA

mRNA sequence

CTCAGCTTCTCATTATTGCAGGAAAGCTTCATGCCGGAGTCCGCGGCTGATGCTGGTAAAGAGAGGATTTTCCCCGCGTGCTTTTACACAGGCAACGTGCTTCCTTTTCCACCACTGCTTATAAATTTCTTAGTCATAGAATCGAATAGATGA

Coding sequence (CDS)

CTCAGCTTCTCATTATTGCAGGAAAGCTTCATGCCGGAGTCCGCGGCTGATGCTGGTAAAGAGAGGATTTTCCCCGCGTGCTTTTACACAGGCAACGTGCTTCCTTTTCCACCACTGCTTATAAATTTCTTAGTCATAGAATCGAATAGATGA

Protein sequence

LSFSLLQESFMPESAADAGKERIFPACFYTGNVLPFPPLLINFLVIESNR

Homology

[Close]

BLAST of HG10023297 vs. NCBI nr
Match: KGN45308.1 (hypothetical protein Csa_015533 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-12
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  LSFSLLQESFMPESAADAGKERIFPACFYTGNVLPFPPLL-INFLVIESNR 51
          LSFSLL ESFM ESAA AGKERI P+CFYTGNVLP PPLL INFLVIE +R
Sbjct: 2  LSFSLLPESFMLESAAGAGKERILPSCFYTGNVLPSPPLLIINFLVIEISR 52

[Close]

BLAST of HG10023297 vs. ExPASy TrEMBL
Match: A0A0A0K733 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433370 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  LSFSLLQESFMPESAADAGKERIFPACFYTGNVLPFPPLL-INFLVIESNR 51
          LSFSLL ESFM ESAA AGKERI P+CFYTGNVLP PPLL INFLVIE +R
Sbjct: 2  LSFSLLPESFMLESAAGAGKERILPSCFYTGNVLPSPPLLIINFLVIEISR 52

The following BLAST results are available for this feature:

BLAST of HG10023297 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45308.1	3.5e-12	82.35	hypothetical protein Csa_015533 [Cucumis sativus]	[more]

BLAST of HG10023297 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K733	1.7e-12	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433370 PE=4 SV=1	[more]

BLAST of HG10023297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023297.1	HG10023297.1	mRNA