HG10023286 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAGCCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAATTAATTAGCAAATTAGTTTTGTTTGGTGTATAATTATATATTTAACATTAGATTAATTTATTGTTTTTTTTTTATTATTTTTAATTTTATGATCAGGTAAAGAAAGACGAGATTATGAACCAAGCATCTCATGCAGCTCATGATGCCAAAGACAAGGCTTCTACGCATGACCAATCTGCCGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGTCATTTTTTTTAATTATTATTTAATACCTCTTTTTTTAGTTTTATTTAAAAAAAATTTTTTTAACTATTTAGGGGAAAAAATTTCAGGGCGGAGCCACCAAAGCATTTTAGAAAAAAAAAAATGTAAACTGTAAAGTTTTTTTTTTTTTTTAATTATAAAAGCCAAAGAGACTGGCATAAAGCTTTACATTATTGACTTCGAGATTAAAGCTTAATTTTGAAGGATTGAATTTAAGATTTATTTAAAGTGAACAAAAATTAAACAAATTTTATATTATAGGATTGATGGATCATAAATTATCATAATTTACAATTTTTTTTCTTTTATGGTGAAATATGTATAGACTGGGGAGCAAGTGAAGAACATAGCACAAGGAGCAGCTGAGGCAGTAAAAAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAATCCAACCAACAACCCTACCAACAATCCATCCACTAGAATTTAA ATGGCAAGCCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAAAGAAAGACGAGATTATGAACCAAGCATCTCATGCAGCTCATGATGCCAAAGACAAGGCTTCTACGCATGACCAATCTGCCGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGGGAGCAAGTGAAGAACATAGCACAAGGAGCAGCTGAGGCAGTAAAAAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAATCCAACCAACAACCCTACCAACAATCCATCCACTAGAATTTAA ATGGCAAGCCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAAAGAAAGACGAGATTATGAACCAAGCATCTCATGCAGCTCATGATGCCAAAGACAAGGCTTCTACGCATGACCAATCTGCCGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGGGAGCAAGTGAAGAACATAGCACAAGGAGCAGCTGAGGCAGTAAAAAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAATCCAACCAACAACCCTACCAACAATCCATCCACTAGAATTTAA MASHQDISHKAGEIVGQAQVKKDEIMNQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNIAQGAAEAVKNTLGMNTDNTSNTNNPTNNPTNNPSTRI Homology
BLAST of HG10023286 vs. NCBI nr
Match: XP_038899752.1 (late embryogenesis abundant protein 2-like [Benincasa hispida]) HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44 Identity = 102/109 (93.58%), Postives = 107/109 (98.17%), Query Frame = 0
BLAST of HG10023286 vs. NCBI nr
Match: XP_023000409.1 (late embryogenesis abundant protein 1 [Cucurbita maxima]) HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31 Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = 0
BLAST of HG10023286 vs. NCBI nr
Match: XP_023515217.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 144.4 bits (363), Expect = 5.6e-31 Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 0
BLAST of HG10023286 vs. NCBI nr
Match: KAA0058773.1 (late embryogenesis abundant protein 1 [Cucumis melo var. makuwa] >TYK10567.1 late embryogenesis abundant protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 142.9 bits (359), Expect = 1.6e-30 Identity = 88/120 (73.33%), Postives = 93/120 (77.50%), Query Frame = 0
BLAST of HG10023286 vs. NCBI nr
Match: XP_022964497.1 (late embryogenesis abundant protein 1 [Cucurbita moschata]) HSP 1 Score: 141.7 bits (356), Expect = 3.6e-30 Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy Swiss-Prot
Match: O49817 (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 3.8e-06 Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy Swiss-Prot
Match: Q96270 (Late embryogenesis abundant protein 7 OS=Arabidopsis thaliana OX=3702 GN=LEA7 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 5.0e-06 Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 6.5e-06 Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy Swiss-Prot
Match: Q9LW12 (Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 7.9e-04 Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 9.3e-32 Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 7.9e-31 Identity = 88/120 (73.33%), Postives = 93/120 (77.50%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30 Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30 Identity = 85/109 (77.98%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of HG10023286 vs. ExPASy TrEMBL
Match: A0A0A0K8V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28 Identity = 83/118 (70.34%), Postives = 92/118 (77.97%), Query Frame = 0
BLAST of HG10023286 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related ) HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14 Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 0
BLAST of HG10023286 vs. TAIR 10
Match: AT1G52690.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 52.0 bits (123), Expect = 3.5e-07 Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 0
BLAST of HG10023286 vs. TAIR 10
Match: AT1G52690.2 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 52.0 bits (123), Expect = 3.5e-07 Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 0
BLAST of HG10023286 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07 Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0
BLAST of HG10023286 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. ) HSP 1 Score: 47.8 bits (112), Expect = 6.7e-06 Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|