HG10023098 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023098
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein
Location	Chr05: 31168558 .. 31172388 (+)
RNA-Seq Expression	HG10023098
Synteny	HG10023098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCCACTTGTAATCCCACTGTGCACTCCTCAATTACCATGGCCCACACTTCTTCAGTACACCCTCAAGACCTTTCTTCCCTTCTCTCCTTCAGACCCACTGCTGCCTCTTCCACCGCCAATATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCAATCAATTGGGTCGACCTTAATTTTAGGAGAGAATCTAGGGATCATTTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAGGTGGCTGAGGTTGTGGAAGAGAATGGAGAAGAGGGAAATGGTGGATCAGCTACTTCAATTGTGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTCAAAAGGGACAGAGTAAGCTTGTGCTTAAATTCTTGTATTGGCCGTCTTCAATCTAGTTGATTGCCTTTTTGGATATGGTTTTAGAGTTTGATTGGTGGGTTTTACTTCATTTTAGGTTTTGTTTTGTTGTTACAGCTCCGGGGTTATAAATTTAGAAATTGTTGCCTGTTTATGGAGATGGAGTATGTCTTAGGACTTTTCCTTTCGTTTTCCTGTCTATTTTTCATTGTTTGTCTTCCACAAATAAGACTGGTTTTCTGGAGTTCTTCGTTCCCCCGCCCCCCTCTCGTTCTCTTGTTTTTGTTTTTGTTTTTAATGTTGGTTGAGCTAATCATTTTTGAGTGAGGCCCAGAGTATGCCTCCTGAAGGGTCAAGTAGGATGCCTCAAGAGATGAACTATTACAATGTGAAATAACTCCTGTAAATGGAACGGTACTTCCTGTTGGGGAAATCTCGATTCCATTAGTGGACTGTTCGGCGGCTTGTTAGCCCTGCCTTCCCAGTAAAATTGTTTGTACACGCGTCCTAGTTTGTTATTCTTGTGTTCATTGGTTCTTTCCCTTCTACTGTTACCAACTTACCATAAGGCTTATGTAAATGTTTGTTTCAGTAATGGAGTTCACTTAATTTTTATTCAACCTCTACTTAAAAGATTTCTTGGATCGTTTGTTTTCTTTCTAGTTTTATTATCTTCTAGGATTAATAGTTCCTATCGTGTCGATTTTCGATCAATGGCTTCATTAGTTGACTAGGAAAACTCTAGAAATCGGGTGGTGTAGTTCTGGTTCTTTGCTTTCTACCTTCCTTTGTAGCATCAGCCCTTGCAGTTAGTTGTTATCCATATTTTCTTTTAAGATCTACTCTGAACCAGAGCGTAGATTAAGAGAGAGGTCCACAAACGATATGTGCATTACTTTTAGTTCATATTGTAAGCTGTGTTCTCTTAAAATATGTGTTTTCCCCCTTCTCTTATTGCTATTGGATCAGTTTTGACATGAAACTGTGTTCTGAAAATGTCCAGACTCGGTCAAAGAGGTTCCTGGAAATTCAAAAGCTGAGGGAAACCAAAATGGAGTATGACCTGAAAACAGCAATATCTTTGTTAAAACAAACGTCTAGCACAAAATTCGTGGAAACTGCTGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAGTTTTCTTGGTCATTGCATGATAATTGACAAATAAAGTTAAAAGTTATATGAAAACATGGGTTTCATCTCAAAAGCAATTGACATTGAGAGGAGTAGCTCATGTATCTTATAAAAATTGTGAGGTCCCTTGATTTTTCTAAGGTGGGATCCTCAACAAAAGTCCAACCTACTGCTTGGTTCTACTATATCTACGTTCTAAATAACCAATCCTCACTTTTTTCATAGGTAAATCTGCCCAAGGGAACTGGACAGACGGTCAAGGTAGCTGTTCTTACTCAAGGTAATCACTAAATTTGACTTAAATGATATTTTCATTGGTTGGGATTCAATGGTAGAAGTAACTAGAGTTTTCAATGAGTTCTGGTTCCATTTCTTTCGATGAGAAAGCATTGTGGAATGGATATTAACACTTGATGCAACTAGTTATACGAAATTTCACAAGTCTCAATGGAAGCTTGGTTTCTACCCGAAAAGAAAAGAAAAAAAAAACTTTAGCAGGTATTATTGTCTTCGAAGTGTTTGTGAATCAGATAGTATGTGGTGGAGAATCCACTATTTGAAAGGGAGGTTTGCTTGCTTGATTGAAAACGGCTCTTTTAGTGTGATTGCTTAAACAACCATGGCATTATTAATATGAATATCTTTATTATTTATAAGCGAATATCCTACTTGTAACCGCTATGCCCTGTGTGATACATGGTATTTGGAAGATGAAAATATTTATTTGTTCTTTATTAAATCTTCATACAGCTTTGCAGTCATTGGTTAATACTGATAAGTTGGTTTTCCCCCTTTAATCAGTTTCACAATAATTTGAGCGAAAAGAATGAGTTGAACGCTGGATATGGTTTCTTAAATCTTTTAACTCTCTTATATATGTGTGTGTCCATATATATATATATATATCTGTTATTTATTTTTTCTTTTAGATGTGGATTCTCTCTATCTGTTCCCATCCCTCTAGTCAACAATGAATATTTAGATTCAGCTTATATTGGCCATATTGCCGTGCTGCTTTTTCAGCTATTCTGTTTGTATCTGCATTATATCTCTTCACGTGGCACTTTTTTTCTTCTTCAGTTTTCTTTTTCTTTCACTCATTTCATATAATCTCATTGCTTTCTGAATCATGTAGGTGAAAAATTCGATGAAGCAAAGAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTGATTGCTTCACCAGATATGATGCCCAAGGTATGGTTCTTACATCTTTTACCTGCTATACATTATGGTGGCTTTCCAAAAATATAAGTATTTCTAACAACATTGTCCATAGAAATGAAGTATGTTTTCACATTTACTTTGAAATCGATTACCAAACACGATTCCAGTTTTCTTGTATGCAATGCAATAATTTTCCCTTCCATGCTTGTACGGAAGTATTTTTGGCTACCTCTTGCACTATGACCGAAAATAAGAAGATATGGTATTGTGTTTGTGTCACAGATTAAAAGAGACCTAGTAGATTAAAGCCTATAGAAATTTAACTGATATACGTGTGAATGGTTTCGGTGTTCACTTTTGAAGTTGGTGCTGATTTTGAGATATTTTAGTTAGTTGTGGCAATTATAAATGAAAAATTAATCTGTTAACCCCATCCTCTCTGTTTGTACCAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGTATAGATAAGAACCATCCACATTTGTATGCATCGCTATTTGACAATAAAATTGTACATAATTACATACATATATTAGCTAAGGGGAAGGTTTTACTTAAGATATAGACTGATAATAGCTTTGTCCTGTTTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCAGACTTTTCTGAAGACGACCTCCTTGTTAACTTGCTTGCTGCAATAGTATGTTCTTGACTAATCTCAAATTCTCATAAACTCCATTGGTTTCTAAAAATTATTTAGTCTTTCACCGTATTGATTTGTTCACATTAATCTAACAGAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGA

mRNA sequence

ATGGCAATGGCCACTTGTAATCCCACTGTGCACTCCTCAATTACCATGGCCCACACTTCTTCAGTACACCCTCAAGACCTTTCTTCCCTTCTCTCCTTCAGACCCACTGCTGCCTCTTCCACCGCCAATATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCAATCAATTGGGTCGACCTTAATTTTAGGAGAGAATCTAGGGATCATTTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAGGTGGCTGAGGTTGTGGAAGAGAATGGAGAAGAGGGAAATGGTGGATCAGCTACTTCAATTGTGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTCAAAAGGGACAGAACTCGGTCAAAGAGGTTCCTGGAAATTCAAAAGCTGAGGGAAACCAAAATGGAGTATGACCTGAAAACAGCAATATCTTTGTTAAAACAAACGTCTAGCACAAAATTCGTGGAAACTGCTGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGACAGACGGTCAAGGTAGCTGTTCTTACTCAAGGTGAAAAATTCGATGAAGCAAAGAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTGATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCAGACTTTTCTGAAGACGACCTCCTTGTTAACTTGCTTGCTGCAATAAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGA

Coding sequence (CDS)

ATGGCAATGGCCACTTGTAATCCCACTGTGCACTCCTCAATTACCATGGCCCACACTTCTTCAGTACACCCTCAAGACCTTTCTTCCCTTCTCTCCTTCAGACCCACTGCTGCCTCTTCCACCGCCAATATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCAATCAATTGGGTCGACCTTAATTTTAGGAGAGAATCTAGGGATCATTTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAGGTGGCTGAGGTTGTGGAAGAGAATGGAGAAGAGGGAAATGGTGGATCAGCTACTTCAATTGTGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTCAAAAGGGACAGAACTCGGTCAAAGAGGTTCCTGGAAATTCAAAAGCTGAGGGAAACCAAAATGGAGTATGACCTGAAAACAGCAATATCTTTGTTAAAACAAACGTCTAGCACAAAATTCGTGGAAACTGCTGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGACAGACGGTCAAGGTAGCTGTTCTTACTCAAGGTGAAAAATTCGATGAAGCAAAGAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTGATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCAGACTTTTCTGAAGACGACCTCCTTGTTAACTTGCTTGCTGCAATAAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGA

Protein sequence

MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRSINWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA

Homology

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BLAST of HG10023098 vs. NCBI nr
Match: XP_038897614.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 680.6 bits (1755), Expect = 7.2e-192
Identity = 351/360 (97.50%), Postives = 354/360 (98.33%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATCNPTVHSS+TMAHTSSVHPQDLSSL   RP A SSTANIFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSLTMAHTSSVHPQDLSSL---RPIAVSSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSI+PKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSILPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSITKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIR+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 357

[Close]

BLAST of HG10023098 vs. NCBI nr
Match: KAA0058588.1 (50S ribosomal protein L1 [Cucumis melo var. makuwa] >TYK10388.1 50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 675.2 bits (1741), Expect = 3.0e-190
Identity = 346/360 (96.11%), Postives = 350/360 (97.22%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATCNPTVHSS TMAHTSSVHPQD SSLLSFRP AASSTANIFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
            NWVDL F RE RDHLVVAALAAEIEVAEVVEENGEEGNGG+ATS +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of HG10023098 vs. NCBI nr
Match: XP_004135947.2 (50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KAE8646386.1 hypothetical protein Csa_016834 [Cucumis sativus])

HSP 1 Score: 674.5 bits (1739), Expect = 5.2e-190
Identity = 345/360 (95.83%), Postives = 352/360 (97.78%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATCNPT+HSS+TMAHTSSVHPQD SSLLSFRP AASSTANIFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDL F RE RDHLVVAALAAEIEV E VEENGEEGNGG+ATS++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]

BLAST of HG10023098 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 666.8 bits (1719), Expect = 1.1e-187
Identity = 341/360 (94.72%), Postives = 349/360 (96.94%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATC+PT  SS+TMAHTSSVHPQD+ SLLSFRP AASSTA IFSLCHPL +QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEG  G ATS+VPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of HG10023098 vs. NCBI nr
Match: XP_023549332.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 639.4 bits (1648), Expect = 1.8e-179
Identity = 335/360 (93.06%), Postives = 342/360 (95.00%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMA  +PTV S + MA TSSVHP DLSSL + RP AASSTA+IFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESR HLVVAALAAEIEVAEVV+ENGEE N G A SIVPKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIVPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ S TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of HG10023098 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.5e-125
Identity = 247/360 (68.61%), Postives = 285/360 (79.17%), Query Frame = 0


Query: 3   MATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRSIN 62
           MAT  P    S+  A +S  + QD S    F+P   +S     SLC  L L +R    + 
Sbjct: 1   MATAAPP-SLSLCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCR-LTLNQRERSCLK 60

Query: 63  WVDLNFRRESRDHL---VVAALAAEIEVAEVVEENGEEGNGGSATSIVP-KIKRGKAALP 122
           WVD   +++S   +   V+AA+AAE EVA++ EE GE  +GG AT   P K K+GKAALP
Sbjct: 61  WVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGE--SGGVATLPSPTKPKKGKAALP 120

Query: 123 LKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQ 182
           LK DRTRSKRFLEIQKLRE K EYDLKTA+SL+KQ SSTKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQ 180

Query: 183 QLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIAS 242
           QLRATV+LPKGTG+TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+
Sbjct: 181 QLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIAT 240

Query: 243 PDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGK 302
            DMM KVASLG++LGPRGLMP PKAGTVT N+ QA+ EFK+GKVE+R DKTGIVH+PFGK
Sbjct: 241 SDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGK 300

Query: 303 ADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSS 359
            +F E+DLL+NL A IKSVE NKPTGAKGVYWKSAHI SSMGPSIRLNIREMLDYK PS+
Sbjct: 301 LNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351

[Close]

BLAST of HG10023098 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.8e-122
Identity = 246/363 (67.77%), Postives = 288/363 (79.34%), Query Frame = 0


Query: 3   MATCNPTVHSSITMAH-TSSVHPQDLS---SLLSFRPTAASSTANIFSLCHPLILQRRGG 62
           MA C    HSS+ +A+  +S   QDL+   SL SF    ASS  N   L  PL+L   G 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSF----ASSRPN--HLSFPLLL-LGGS 60

Query: 63  RSINWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIV--PKIKRGKAA 122
           R      ++  R S    +V+A+AAE ++      + EE    +AT+++  PK K+GKAA
Sbjct: 61  RDRRCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAA 120

Query: 123 LPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYN 182
           L LKRDRTRSKRFLEIQKLRETK EYD+ TAISLLKQT++T+FVE+ EAHFRLNIDPKYN
Sbjct: 121 LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN 180

Query: 183 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 242
           DQQLRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLI 240

Query: 243 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPF 302
           ASPDMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PF
Sbjct: 241 ASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPF 300

Query: 303 GKADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIP 360
           GK +F+E+DLL+N LAA+KSVE NKP GAKGVYWKSAHICSSMGPSI+LNIREM+D+K P
Sbjct: 301 GKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPP 346

[Close]

BLAST of HG10023098 vs. ExPASy Swiss-Prot
Match: P49208 (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 5.2e-76
Identity = 145/168 (86.31%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 110 IKRGKAALPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRL 169
           +++GK    LK DR RSKRFLEIQKLRE K EYDLKTAISL+K+T+ TKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 170 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 229
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 230 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 278
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]

BLAST of HG10023098 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.6e-75
Identity = 140/230 (60.87%), Postives = 183/230 (79.57%), Query Frame = 0


Query: 126 SKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 185
           S+R  E+Q   E + EY    A+SLLK+T++ KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 186 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 245
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 246 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 305
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 306 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKI 356
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + DYK+
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234

[Close]

BLAST of HG10023098 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.4e-75
Identity = 141/230 (61.30%), Postives = 183/230 (79.57%), Query Frame = 0


Query: 126 SKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 185
           S+R  + Q   E K  Y+   A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVENK-AYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 186 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 245
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 246 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 305
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 306 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKI 356
           LLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D K+
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of HG10023098 vs. ExPASy TrEMBL
Match: A0A5D3CGN7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00300 PE=3 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.5e-190
Identity = 346/360 (96.11%), Postives = 350/360 (97.22%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATCNPTVHSS TMAHTSSVHPQD SSLLSFRP AASSTANIFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
            NWVDL F RE RDHLVVAALAAEIEVAEVVEENGEEGNGG+ATS +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of HG10023098 vs. ExPASy TrEMBL
Match: A0A0A0K886 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 670.6 bits (1729), Expect = 3.6e-189
Identity = 343/360 (95.28%), Postives = 351/360 (97.50%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATCNPT+HSS+TMAHTSSVHPQD SSLLSFRP AASSTANIFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDL F RE RDHLVVAALAAEIEV E VEENGEEGNGG+ATS++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+AIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]

BLAST of HG10023098 vs. ExPASy TrEMBL
Match: A0A6J1DG73 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1)

HSP 1 Score: 666.8 bits (1719), Expect = 5.2e-188
Identity = 341/360 (94.72%), Postives = 349/360 (96.94%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMATC+PT  SS+TMAHTSSVHPQD+ SLLSFRP AASSTA IFSLCHPL +QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEG  G ATS+VPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of HG10023098 vs. ExPASy TrEMBL
Match: A0A6J1JXL6 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.5e-179
Identity = 334/360 (92.78%), Postives = 342/360 (95.00%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMA  +PTV S + MA TSSVHP DLSSL + RP AASSTA+IFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESR HLVVAALAAEIEVAEVV+ENGE+ N G A SIVPKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGED-NDGLAASIVPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ S TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKREYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of HG10023098 vs. ExPASy TrEMBL
Match: A0A6J1GQH4 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111456548 PE=3 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.5e-179
Identity = 334/360 (92.78%), Postives = 341/360 (94.72%), Query Frame = 0


Query: 1   MAMATCNPTVHSSITMAHTSSVHPQDLSSLLSFRPTAASSTANIFSLCHPLILQRRGGRS 60
           MAMA  +PTV S + MA TSSVHP DLSSL + RP AASSTA+IFSLCHPL LQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLTLQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIVPKIKRGKAALPLK 120
           INWVDLNFRRESR HLVVAALAAEIEVAEVV+ENGEE N G A SI PKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIAPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQTS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of HG10023098 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 439.9 bits (1130), Expect = 2.0e-123
Identity = 246/363 (67.77%), Postives = 288/363 (79.34%), Query Frame = 0


Query: 3   MATCNPTVHSSITMAH-TSSVHPQDLS---SLLSFRPTAASSTANIFSLCHPLILQRRGG 62
           MA C    HSS+ +A+  +S   QDL+   SL SF    ASS  N   L  PL+L   G 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSF----ASSRPN--HLSFPLLL-LGGS 60

Query: 63  RSINWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIV--PKIKRGKAA 122
           R      ++  R S    +V+A+AAE ++      + EE    +AT+++  PK K+GKAA
Sbjct: 61  RDRRCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAA 120

Query: 123 LPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYN 182
           L LKRDRTRSKRFLEIQKLRETK EYD+ TAISLLKQT++T+FVE+ EAHFRLNIDPKYN
Sbjct: 121 LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN 180

Query: 183 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 242
           DQQLRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLI 240

Query: 243 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPF 302
           ASPDMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PF
Sbjct: 241 ASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPF 300

Query: 303 GKADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIP 360
           GK +F+E+DLL+N LAA+KSVE NKP GAKGVYWKSAHICSSMGPSI+LNIREM+D+K P
Sbjct: 301 GKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPP 346

[Close]

BLAST of HG10023098 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-80
Identity = 184/302 (60.93%), Postives = 218/302 (72.19%), Query Frame = 0


Query: 3   MATCNPTVHSSITMAH-TSSVHPQDLS---SLLSFRPTAASSTANIFSLCHPLILQRRGG 62
           MA C    HSS+ +A+  +S   QDL+   SL SF    ASS  N   L  PL+L   G 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSF----ASSRPN--HLSFPLLL-LGGS 60

Query: 63  RSINWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSIV--PKIKRGKAA 122
           R      ++  R S    +V+A+AAE ++      + EE    +AT+++  PK K+GKAA
Sbjct: 61  RDRRCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAA 120

Query: 123 LPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYN 182
           L LKRDRTRSKRFLEIQKLRETK EYD+ TAISLLKQT++T+FVE+ EAHFRLNIDPKYN
Sbjct: 121 LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN 180

Query: 183 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 242
           DQQLRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLI 240

Query: 243 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPF 299
           ASPDMM KVA LGK+LGPRGLMPNPKAGTVT NIPQ+    ++GK+     K G+     
Sbjct: 241 ASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHL 282

[Close]

BLAST of HG10023098 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 165.2 bits (417), Expect = 9.5e-41
Identity = 87/215 (40.47%), Postives = 134/215 (62.33%), Query Frame = 0


Query: 142 YDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQ 201
           +DL  AI  +K  +  KF ET EAH RL I+   ++  +R T+ LP    + VKVA   +
Sbjct: 188 FDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAE 247

Query: 202 GEKFDEAKNAGADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPN 261
           G   ++AK AGAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++L   GLMPN
Sbjct: 248 GADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRILNNHGLMPN 307

Query: 262 PKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVN 321
           PK G+VT ++ +A+ + K G  ++R DKT I+H+P GK  FSE+ L  N+ A + ++ + 
Sbjct: 308 PKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLA 367

Query: 322 KPTGAKGV-----YWKSAHICSSMGPSIRLNIREM 351
           KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 368 KPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of HG10023098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897614.1	7.2e-192	97.50	50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]	[more]
KAA0058588.1	3.0e-190	96.11	50S ribosomal protein L1 [Cucumis melo var. makuwa] >TYK10388.1 50S ribosomal pr...	[more]
XP_004135947.2	5.2e-190	95.83	50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KAE8646386.1 hypothet...	[more]
XP_022152504.1	1.1e-187	94.72	50S ribosomal protein L1, chloroplastic-like [Momordica charantia]	[more]
XP_023549332.1	1.8e-179	93.06	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10023098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE95	3.5e-125	68.61	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
Q9LY66	2.8e-122	67.77	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
P49208	5.2e-76	86.31	50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R...	[more]
Q3MA18	2.6e-75	60.87	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
B0JNQ5	3.4e-75	61.30	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]

BLAST of HG10023098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGN7	1.5e-190	96.11	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00...	[more]
A0A0A0K886	3.6e-189	95.28	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]
A0A6J1DG73	5.2e-188	94.72	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1	[more]
A0A6J1JXL6	1.5e-179	92.78	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1	[more]
A0A6J1GQH4	1.5e-179	92.78	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111456548 PE=3 SV=1	[more]

BLAST of HG10023098 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	2.0e-123	67.77	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	1.2e-80	60.93	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	9.5e-41	40.47	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 125..349 e-value: 3.1E-93 score: 309.3
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 120..350 score: 39.408398
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 189..280 e-value: 6.0E-83 score: 279.4
None	No IPR available	GENE3D	3.30.190.20		coord: 142..345 e-value: 6.0E-83 score: 279.4
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 139..352
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 139..352
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 151..341 e-value: 1.4E-47 score: 162.1
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 144..345 e-value: 1.84684E-73 score: 225.141
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 242..260
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 128..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023098.1	HG10023098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding