HG10023084 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023084
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L44
Location	Chr05: 31076236 .. 31077632 (-)
RNA-Seq Expression	HG10023084
Synteny	HG10023084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCAGTTAAATATTGGGCTTGCAATGGACCGTGGGCTAAAGTTATCAGAAATCGGGCCCATAATCGGCCTCCGATGTCCACAGTTAATGGTGTATATAAAACGAGGGATTTTTTTCGGTTCTGCTTGTTCGCCGATTAGGTTTTCTTCAGAGAGGTAGTAAGGACCAGAATCCATCATGGTAATCTCCCTTCACTGTTCTTTGCTGTTTGTTTGGATTTTATCTCTCTGTTTATGAATCTATGCTGTGTTTGGTGATGAGAATTTAACTTTTAACTGGGAAGACAAAAGCATGTTCTTCGTCCTTCCATCTTATCCTATTTAATTCCGGACACTGGAAGCTTAAGCCTCGTAAAATTATTTGACGTGAGCTAGAATTGTCGGTTTTATGGAGCTTAGTAGATAAGCGAATGTTTTGTAAATACATTTTTAATCTAGAATATTGGATTGATAATTTTCGGAATCGTTTATTGGCATTTATGAAGGGCATTGTTCGTTTAGAAGTTTATACTGTTCTATGCGGAGTGGTTATTTGAGTTTTTTTTCCCTTTAGTTTGTTGATTTTTGGGAAGCCTTAATGCTGTAGATCTGGTTTTAATATAGTCGAATTGAAAAACAAATTAGTAAGTTGACACTCGAGAGATTTGAAATGCCACTTTAAACTGACTTTGAAATTCACTTTAGAATGTGTTCTGGTTTTTCTCTATTCAATCATTATTCATTTTTTGTTCACAGTTGCCGATTATGTTTTCCTTTGCAAGTGGCTATATATATATACACATTCTAGAGTTCTAATGTATGATCTCTAGTTTTAATTTGAATGATATTAAATACTTCTGCTAAATAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGCCAAACCAAGCCCGTCTTTCATAAGAAGGTGAAAATCACTCCCATGATCTGTTAAACCCCAAACCAGATTTTGTTTATTCTCCTTGAATAAGTAATCATGAGAGCTTTAACTCTCTTGCCAGGCCAAAACCACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCATCCCATTAAGGTTTGTATTCCAAGAAAACTTCTCATTCATTAGTGTTTCTATGCTGATATAAACTATATAGATGGACATAACTCTTATTTTAGTTATCCTTCAATTTCTTTATCATTAATGTCTACCTTCTATCTTTTGTTAATGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

mRNA sequence

ATGACGGCAGTTAAATATTGGGCTTGCAATGGACCGTGGGCTAAAGTTATCAGAAATCGGGCCCATAATCGGCCTCCGATGTCCACAGTTAATGGTGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGCCAAACCAAGCCCGTCTTTCATAAGAAGGCCAAAACCACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Coding sequence (CDS)

ATGACGGCAGTTAAATATTGGGCTTGCAATGGACCGTGGGCTAAAGTTATCAGAAATCGGGCCCATAATCGGCCTCCGATGTCCACAGTTAATGGTGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGCCAAACCAAGCCCGTCTTTCATAAGAAGGCCAAAACCACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Protein sequence

MTAVKYWACNGPWAKVIRNRAHNRPPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF

Homology

[Close]

BLAST of HG10023084 vs. NCBI nr
Match: XP_017635996.1 (PREDICTED: 60S ribosomal protein L44-like [Gossypium arboreum] >KHG28366.1 60S ribosomal L44 [Gossypium arboreum])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 27  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 86
           M  V+ VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 1   MKFVDEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 60

Query: 87  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 110

[Close]

BLAST of HG10023084 vs. NCBI nr
Match: KAG2409915.1 (60S ribosomal protein [Vigna angularis])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 25  PPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 84
           PP +    VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQ
Sbjct: 15  PPPTPATMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQ 74

Query: 85  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 75  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 126

[Close]

BLAST of HG10023084 vs. NCBI nr
Match: RVX02874.1 (60S ribosomal protein L44 [Vitis vinifera])

HSP 1 Score: 218.4 bits (555), Expect = 3.8e-53
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 31  NGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 90
           N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 3   NRVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 62

Query: 91  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 63  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 108

[Close]

BLAST of HG10023084 vs. NCBI nr
Match: PPS03753.1 (hypothetical protein GOBAR_AA16925 [Gossypium barbadense])

HSP 1 Score: 218.4 bits (555), Expect = 3.8e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 30  VNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 89
           +N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 3   LNFVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 62

Query: 90  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 63  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 109

[Close]

BLAST of HG10023084 vs. NCBI nr
Match: CAA3026450.1 (60S ribosomal L44 [Olea europaea subsp. europaea])

HSP 1 Score: 218.4 bits (555), Expect = 3.8e-53
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 27  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 86
           +S    VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 66  LSAATMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 125

Query: 87  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 126 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 175

[Close]

BLAST of HG10023084 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of HG10023084 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-52
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of HG10023084 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 136
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of HG10023084 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.4e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 136
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of HG10023084 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.4e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 136
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of HG10023084 vs. ExPASy TrEMBL
Match: A0A0B0PY50 (60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108478075 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.3e-54
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 27  MSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 86
           M  V+ VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 1   MKFVDEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 60

Query: 87  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 110

[Close]

BLAST of HG10023084 vs. ExPASy TrEMBL
Match: A0A5N6PMS3 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_05852 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 25  PPMSTVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 84
           P  S  + VNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 21  PVRSHADSVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 80

Query: 85  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 81  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 132

[Close]

BLAST of HG10023084 vs. ExPASy TrEMBL
Match: A0A438J1R3 (60S ribosomal protein L44 OS=Vitis vinifera OX=29760 GN=RPL44_3 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 31  NGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 90
           N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 3   NRVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 62

Query: 91  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 63  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 108

[Close]

BLAST of HG10023084 vs. ExPASy TrEMBL
Match: A0A2P5XK79 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16925 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 30  VNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 89
           +N VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 3   LNFVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 62

Query: 90  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 63  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 109

[Close]

BLAST of HG10023084 vs. ExPASy TrEMBL
Match: A0A5D2QY53 (Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A04G143500v1 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 28  STVNGVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 87
           S V  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 45  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 104

Query: 88  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 105 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 153

[Close]

BLAST of HG10023084 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-53
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of HG10023084 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-53
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of HG10023084 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-45
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 33  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 92
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 93  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 125
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of HG10023084 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_017635996.1	1.7e-53	96.36	PREDICTED: 60S ribosomal protein L44-like [Gossypium arboreum] >KHG28366.1 60S r...	[more]
KAG2409915.1	1.7e-53	93.75	60S ribosomal protein [Vigna angularis]	[more]
RVX02874.1	3.8e-53	99.06	60S ribosomal protein L44 [Vitis vinifera]	[more]
PPS03753.1	3.8e-53	98.13	hypothetical protein GOBAR_AA16925 [Gossypium barbadense]	[more]
CAA3026450.1	3.8e-53	95.45	60S ribosomal L44 [Olea europaea subsp. europaea]	[more]

BLAST of HG10023084 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	1.5e-55	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	5.7e-52	93.27	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	3.2e-42	77.67	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	5.4e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	5.4e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of HG10023084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B0PY50	8.3e-54	96.36	60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108478075 PE=3 SV=1	[more]
A0A5N6PMS3	1.8e-53	93.75	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_05852 PE=3 SV=1	[more]
A0A438J1R3	1.8e-53	99.06	60S ribosomal protein L44 OS=Vitis vinifera OX=29760 GN=RPL44_3 PE=3 SV=1	[more]
A0A2P5XK79	1.8e-53	98.13	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16925 PE=3 SV...	[more]
A0A5D2QY53	2.4e-53	97.25	Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A04...	[more]

BLAST of HG10023084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	4.1e-53	93.27	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	4.1e-53	93.27	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	1.1e-45	92.39	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 50..124 e-value: 1.6E-34 score: 118.2
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 20..136
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 94..105
None	No IPR available	GENE3D	3.10.450.80		coord: 33..136 e-value: 3.5E-50 score: 170.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 20..136
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 33..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023084.1	HG10023084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006646	phosphatidylethanolamine biosynthetic process
biological_process	GO:0016540	protein autoprocessing
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0004609	phosphatidylserine decarboxylase activity
molecular_function	GO:0003735	structural constituent of ribosome