HG10023068 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10023068
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 30889642 .. 30890541 (-)
RNA-Seq ExpressionHG10023068
SyntenyHG10023068
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCGGGATTCAATTTCTGGGTAATTGGGATGAATTCGTTCAATTCGGAATTGAAAATCTCGATGTGTCGGAATTTACTGTCGGCTCTTCGGGTAGCGACGACAAGTCGTTTTCTGTCGTTCATGGCAGCCGGAGTGAAGCAATGGAGACCCGCTGGAGTGACCCGGGTCGGGACAGGGGAAACAGAGGAATCAAGATTTTCAGGAATCTCCACTCTGAAAATGCTCCACCACCCATCGTCGGCCTTCCGGTGGAAGAAGACAGTGGAGTCGCCGGACCACGACGGCCATCCACCCCGACCGGAAACCACAACCCGTCGATCCGGGTCAGAAGACTTAAAAACAACAATTTCTGTGTGGAGCTCGTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCCACAAACTTACCACTTTCCGAAACCGCCGGACTGAAATCGACGGACCCGGGAGGAGTCAGCCGGGTAATCGAATCGGCACCGTCCAACGCAGTGGAATACAGAGCGGACCAGCTCGTGAAGGGCTTTTGGGGATTTTCATGAGCAGAGATGAAAAAGAGTCGACCACTTCTGACGATGGGTCGGTCGTTAAAGAAGCTTCCGGGGGCGGAAGGGAGCAATTTAGGGGCGGAATTAGGGGAATCGGAGAGGTAAATTCTAGAGGAGCCGGAGCGTTCAGAGATGAAGACGACGGAAAGTTGGTTATCGAGGAATTGGGCGTTGAAATTGACGGAGATTCCGTCGGTGAGGCGGCGTTCGGTGGTGGGAGAATTGAGTGGAACAGAGAAGATGTCGAAGCCGTATTGTTGGAGGCCGATGGTGGTGAAGAGGACGGCGCCGGTGGGATTATCCATTTGGAGGAAGTGGCGAAAGTGAAGAGTGAGTGA

mRNA sequence

ATGGAAATCGGGATTCAATTTCTGGGTAATTGGGATGAATTCGTTCAATTCGGAATTGAAAATCTCGATGTGTCGGAATTTACTGTCGGCTCTTCGGGTAGCGACGACAAGTCGTTTTCTGTCGTTCATGGCAGCCGGAGTGAAGCAATGGAGACCCGCTGGAGTGACCCGGGTCGGGACAGGGGAAACAGAGGAATCAAGATTTTCAGGAATCTCCACTCTGAAAATGCTCCACCACCCATCGTCGGCCTTCCGGTGGAAGAAGACAGTGGAGTCGCCGGACCACGACGGCCATCCACCCCGACCGGAAACCACAACCCGTCGATCCGGGTCAGAAGACTTAAAAACAACAATTTCTGTGTGGAGCTCGTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCCACAAACTTACCACTTTCCGAAACCGCCGGACTGAAATCGACGGACCCGGGAGGAGTCAGCCGGGTAATCGAATCGGCACCGTCCAACGCAGTGGAATACAGAGCGGACCAGCTCGTGAAGGGCTTTTGGGGATTTTCATGAGCAGAGATGAAAAAGAGTCGACCACTTCTGACGATGGGTCGGTCGTTAAAGAAGCTTCCGGGGGCGGAAGGGAGCAATTTAGGGGCGGAATTAGGGGAATCGGAGAGGTAAATTCTAGAGGAGCCGGAGCGTTCAGAGATGAAGACGACGGAAAGTTGGTTATCGAGGAATTGGGCGTTGAAATTGACGGAGATTCCGTCGGTGAGGCGGCGTTCGGTGGTGGGAGAATTGAGTGGAACAGAGAAGATGTCGAAGCCGTATTGTTGGAGGCCGATGGTGGTGAAGAGGACGGCGCCGGTGGGATTATCCATTTGGAGGAAGTGGCGAAAGTGAAGAGTGAGTGA

Coding sequence (CDS)

ATGGAAATCGGGATTCAATTTCTGGGTAATTGGGATGAATTCGTTCAATTCGGAATTGAAAATCTCGATGTGTCGGAATTTACTGTCGGCTCTTCGGGTAGCGACGACAAGTCGTTTTCTGTCGTTCATGGCAGCCGGAGTGAAGCAATGGAGACCCGCTGGAGTGACCCGGGTCGGGACAGGGGAAACAGAGGAATCAAGATTTTCAGGAATCTCCACTCTGAAAATGCTCCACCACCCATCGTCGGCCTTCCGGTGGAAGAAGACAGTGGAGTCGCCGGACCACGACGGCCATCCACCCCGACCGGAAACCACAACCCGTCGATCCGGGTCAGAAGACTTAAAAACAACAATTTCTGTGTGGAGCTCGTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCCACAAACTTACCACTTTCCGAAACCGCCGGACTGAAATCGACGGACCCGGGAGGAGTCAGCCGGGTAATCGAATCGGCACCGTCCAACGCAGTGGAATACAGAGCGGACCAGCTCGTGAAGGGCTTTTGGGGATTTTCATGAGCAGAGATGAAAAAGAGTCGACCACTTCTGACGATGGGTCGGTCGTTAAAGAAGCTTCCGGGGGCGGAAGGGAGCAATTTAGGGGCGGAATTAGGGGAATCGGAGAGGTAAATTCTAGAGGAGCCGGAGCGTTCAGAGATGAAGACGACGGAAAGTTGGTTATCGAGGAATTGGGCGTTGAAATTGACGGAGATTCCGTCGGTGAGGCGGCGTTCGGTGGTGGGAGAATTGAGTGGAACAGAGAAGATGTCGAAGCCGTATTGTTGGAGGCCGATGGTGGTGAAGAGGACGGCGCCGGTGGGATTATCCATTTGGAGGAAGTGGCGAAAGTGAAGAGTGAGTGA

Protein sequence

MEIGIQFLGNWDEFVQFGIENLDVSEFTVGSSGSDDKSFSVVHGSRSEAMETRWSDPGRDRGNRGIKIFRNLHSENAPPPIVGLPVEEDSGVAGPRRPSTPTGNHNPSIRVRRLKNNNFCVELVKFAAPRTRAIRSNRHKLTTFRNRRTEIDGPGRSQPGNRIGTVQRSGIQSGPAREGLLGIFMSRDEKESTTSDDGSVVKEASGGGREQFRGGIRGIGEVNSRGAGAFRDEDDGKLVIEELGVEIDGDSVGEAAFGGGRIEWNREDVEAVLLEADGGEEDGAGGIIHLEEVAKVKSE
Homology
BLAST of HG10023068 vs. NCBI nr
Match: CBI37008.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-21
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 0

Query: 38  SFSVVHGSRSEAMETRWSDPGRDRGN-RGIKIFRNLHSENAPPPIVGLPVEEDSGVAGPR 97
           S + +HG RSE + +    P R  GN R +K  R +H+ENAPP I+ LPV+ + G+AGP 
Sbjct: 198 SLTTLHGRRSETVNSWRGYPARSLGNTRRLKTLRQIHAENAPPSIISLPVKVEVGIAGPG 257

Query: 98  RPSTPTGNHNPSIRVRRLKNNNFCVELVKFAAPRTRAIRSNRHKLTTFRNRRTEIDGPGR 157
            P+T    +N   R+R  +NNN  V+L+KF APRTR I  N ++L+  RNR T ID   R
Sbjct: 258 GPTTTLAYNNTLFRLRFPENNNISVQLMKFTAPRTRPIGCNSYELSGPRNRWTVIDNSVR 317

Query: 158 SQPGNRIGTVQRSGIQSGPAREGLL-------GIFMSRDEKES 193
           SQ  N +  ++ SG+ S PA EGLL       GI + R E E+
Sbjct: 318 SQLHNCL-VIKPSGVNSRPADEGLLWPCSGLIGIEIERKEVEA 359

BLAST of HG10023068 vs. NCBI nr
Match: PON43209.1 (hypothetical protein PanWU01x14_275520 [Parasponia andersonii])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-06
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0

Query: 199 SVVKEASGGGREQFRGGIRGIGEVNSRGAGAFRDEDDGK------LVIEELGVEIDGDSV 258
           S + E  G   +QFR G    GEV+ RG+ + RDED+G+      ++ +EL +E+DG  +
Sbjct: 3   SPLGETDGNEPQQFRVGKTRTGEVDPRGSSSLRDEDEGRAGTARIMIEDELTIEVDGVGI 62

Query: 259 GEAAFGG--GRIEWNREDVEAVLLEADGGEEDGAGG 287
            EAAFG     +E   E VEAV+  A GGEEDGA G
Sbjct: 63  SEAAFGAELRTLELKGEYVEAVIGPAHGGEEDGAFG 98

BLAST of HG10023068 vs. NCBI nr
Match: PON88760.1 (hypothetical protein TorRG33x02_154660 [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-05
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 199 SVVKEASGGGREQFRGGIRGIGEVNSRGAGAFRDEDDGK-------LVIEELGVEIDGDS 258
           S + E  G   +QFR G    GEV+ RG+G+ RDE++G+       ++ +EL +E+DG  
Sbjct: 3   SPLGETDGNEPQQFRVGKTRTGEVDPRGSGSLRDEEEGRAGTVRIMIIEDELTIEVDGVG 62

Query: 259 VGEAAFGG--GRIEWNREDVEAVLLEADGGEEDGAGG 287
           + EAAFG     +E   E VEAV+  A   EEDGA G
Sbjct: 63  ISEAAFGAELRTMELKGEYVEAVIGPAHRAEEDGAFG 99

BLAST of HG10023068 vs. ExPASy TrEMBL
Match: A0A5K0Z247 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9927 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 61/198 (30.81%), Postives = 82/198 (41.41%), Query Frame = 0

Query: 3   IGIQFLGNWDEFVQFGIENLDVSEFTVGSSGSDDKSFSVVHGSRSEAMETRWSDPGRDRG 62
           +G  FLG+ DE     IE+LDV+   VG         S     R E +    S    D  
Sbjct: 33  VGRDFLGDLDELPTDQIEDLDVAVRRVGPPSRHHDELSGSRRGRGERVHAGRS----DSF 92

Query: 63  NRGIKIFRNLHSENAPPPIVGLPVEEDSGVAGPRRPSTPTGNHNPSIRVRRLKNNNFCVE 122
           + G         E+APPP+VGLP+E+   + G RRP+       P+  + R++      E
Sbjct: 93  HLGFAAMPENRPEDAPPPVVGLPMEKYGRLVGERRPTAVVDELEPAGPIGRVEEIYIGGE 152

Query: 123 LVKFAAPRTRAIRSNRHKLTTFRNRRTEIDGPGRSQPGNRIGTVQRSGIQSGPAREGLLG 182
           LV    P + A R +R  L   RN R EI      QP    G  Q   +   P   GL  
Sbjct: 153 LVNLPRPPSLAGRRHRRPLAGRRNGRAEIRHQVGRQPSGLEG-FQVRRVHGRPTLPGLPS 212

Query: 183 IFMSRDEKESTTSDDGSV 201
               RD  +  +SD  SV
Sbjct: 213 RPFRRDVNQPVSSDGRSV 225

BLAST of HG10023068 vs. ExPASy TrEMBL
Match: A0A2P5B350 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_275520 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-07
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0

Query: 199 SVVKEASGGGREQFRGGIRGIGEVNSRGAGAFRDEDDGK------LVIEELGVEIDGDSV 258
           S + E  G   +QFR G    GEV+ RG+ + RDED+G+      ++ +EL +E+DG  +
Sbjct: 3   SPLGETDGNEPQQFRVGKTRTGEVDPRGSSSLRDEDEGRAGTARIMIEDELTIEVDGVGI 62

Query: 259 GEAAFGG--GRIEWNREDVEAVLLEADGGEEDGAGG 287
            EAAFG     +E   E VEAV+  A GGEEDGA G
Sbjct: 63  SEAAFGAELRTLELKGEYVEAVIGPAHGGEEDGAFG 98

BLAST of HG10023068 vs. ExPASy TrEMBL
Match: A0A2P5ET98 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_154660 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 199 SVVKEASGGGREQFRGGIRGIGEVNSRGAGAFRDEDDGK-------LVIEELGVEIDGDS 258
           S + E  G   +QFR G    GEV+ RG+G+ RDE++G+       ++ +EL +E+DG  
Sbjct: 3   SPLGETDGNEPQQFRVGKTRTGEVDPRGSGSLRDEEEGRAGTVRIMIIEDELTIEVDGVG 62

Query: 259 VGEAAFGG--GRIEWNREDVEAVLLEADGGEEDGAGG 287
           + EAAFG     +E   E VEAV+  A   EEDGA G
Sbjct: 63  ISEAAFGAELRTMELKGEYVEAVIGPAHRAEEDGAFG 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CBI37008.33.8e-2143.56unnamed protein product, partial [Vitis vinifera][more]
PON43209.12.0e-0643.75hypothetical protein PanWU01x14_275520 [Parasponia andersonii][more]
PON88760.18.5e-0541.24hypothetical protein TorRG33x02_154660 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5K0Z2474.4e-0730.81Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9927 PE=4 SV=... [more]
A0A2P5B3509.8e-0743.75Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_275520 PE... [more]
A0A2P5ET984.1e-0541.24Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_154660 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10023068.1HG10023068.1mRNA