HG10023049 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023049
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein NIM1-INTERACTING 1
Location	Chr05: 30779573 .. 30779968 (-)
RNA-Seq Expression	HG10023049
Synteny	HG10023049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGAAAAACTGCAGCCGCCGCGGGAGAGGATCGCCAAGGAGGAGGAGGAGGAGGTGGTGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGAAGGAATTGATGATCGGCGAGGAGGAGGAAATCGCGGCGGAGAAGAGAAGGAAGAAGATGAAGACGGCGGAAGCTGTGGAGCATCGGTCGACTTGGATTCCAAAGTTCGAGAGAGAGGATTTCGATGAGGAATTTCAGGTGAGAGGACCGGCTTTGATTCTTCCGAAGCCTTGTAATCTTGTTAAAGAAGACACCGCGGCGGCGATGAAGAAGAAGACAAAGAAAGTGAGAAATGGAGATGATTGTTTGGATCTTAATCTCGCTCTCTAG

mRNA sequence

ATGGAAAACGAAAAACTGCAGCCGCCGCGGGAGAGGATCGCCAAGGAGGAGGAGGAGGAGGTGGTGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGAAGGAATTGATGATCGGCGAGGAGGAGGAAATCGCGGCGGAGAAGAGAAGGAAGAAGATGAAGACGGCGGAAGCTGTGGAGCATCGGTCGACTTGGATTCCAAAGTTCGAGAGAGAGGATTTCGATGAGGAATTTCAGGTGAGAGGACCGGCTTTGATTCTTCCGAAGCCTTGTAATCTTGTTAAAGAAGACACCGCGGCGGCGATGAAGAAGAAGACAAAGAAAGTGAGAAATGGAGATGATTGTTTGGATCTTAATCTCGCTCTCTAG

Coding sequence (CDS)

ATGGAAAACGAAAAACTGCAGCCGCCGCGGGAGAGGATCGCCAAGGAGGAGGAGGAGGAGGTGGTGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGAAGGAATTGATGATCGGCGAGGAGGAGGAAATCGCGGCGGAGAAGAGAAGGAAGAAGATGAAGACGGCGGAAGCTGTGGAGCATCGGTCGACTTGGATTCCAAAGTTCGAGAGAGAGGATTTCGATGAGGAATTTCAGGTGAGAGGACCGGCTTTGATTCTTCCGAAGCCTTGTAATCTTGTTAAAGAAGACACCGCGGCGGCGATGAAGAAGAAGACAAAGAAAGTGAGAAATGGAGATGATTGTTTGGATCTTAATCTCGCTCTCTAG

Protein sequence

MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEKRRKKMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDTAAAMKKKTKKVRNGDDCLDLNLAL

Homology

[Close]

BLAST of HG10023049 vs. NCBI nr
Match: XP_038898983.1 (protein NIM1-INTERACTING 1-like [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 112/139 (80.58%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAA-EKRR 60
           MENEKLQP  ERIA+EEEEE  EME FFALVRNFKEMRDRRRKELMIGEEEEIAA EKRR
Sbjct: 1   MENEKLQPAPERIAEEEEEE--EMEMFFALVRNFKEMRDRRRKELMIGEEEEIAAEEKRR 60

Query: 61  KKMKTA-EAVEHRSTWIPKFEREDFDEEFQVRGPALILP-KPCNLVKEDTAA-----AMK 120
           K+MK+A EAVE+RSTWIPKFEREDFDEEFQVRG   ILP KP NLVKEDT+A     A  
Sbjct: 61  KRMKSAPEAVENRSTWIPKFEREDFDEEFQVRGQGFILPNKPYNLVKEDTSAAAASTAAM 120

Query: 121 KKTKKVRNGDDCLDLNLAL 132
           KK K V+NGDDCLDLNLAL
Sbjct: 121 KKKKNVKNGDDCLDLNLAL 137

[Close]

BLAST of HG10023049 vs. NCBI nr
Match: XP_022991628.1 (uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991630.1 uncharacterized protein LOC111488189 [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 4.5e-35
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEKRRK 60
           MEN+K QPPRE IA+EEEEE VEME+F+ALVRNFKE+RDR RKE++ GE +E AAEK RK
Sbjct: 1   MENQKRQPPRETIAEEEEEE-VEMEKFYALVRNFKEIRDRWRKEVVNGEGDETAAEKTRK 60

Query: 61  KMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDT--AAAMKKKTKKV 120
           +MKT E V+++S+WI +FEREDFDE+ QV G A+ LPK C LVKEDT  AAA  KK KKV
Sbjct: 61  RMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPLKKEKKV 120

Query: 121 RNGDDCLDLNLAL 132
            +G DCLDLNL+L
Sbjct: 121 ASGVDCLDLNLSL 132

[Close]

BLAST of HG10023049 vs. NCBI nr
Match: XP_023547822.1 (uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 87/137 (63.50%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEE---EEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEK 60
           MEN+K QPPR  IA+EEE   EE VEME F+ALVRNFKE+RDR RKE++ GE  E AAEK
Sbjct: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60

Query: 61  RRKKMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDTAAA---MKKK 120
            RK+MKT E  +++S+WI +FEREDFDE+ QV G A+ LPK C LVKEDT  A     KK
Sbjct: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120

Query: 121 TKKVRNGDDCLDLNLAL 132
            KKV +G DCLDLNL+L
Sbjct: 121 EKKVASGVDCLDLNLSL 137

[Close]

BLAST of HG10023049 vs. NCBI nr
Match: KAG6575739.1 (hypothetical protein SDJN03_26378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 8.8e-31
Identity = 84/134 (62.69%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEKRRK 60
           MEN+K QPPRE IA+EEE   VEME F+ALVRNFKE+RDR RKE++ GE  E AAEK RK
Sbjct: 1   MENQKRQPPRETIAEEEE---VEMETFYALVRNFKEIRDRWRKEVVNGEGVETAAEKTRK 60

Query: 61  KMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDTAAA---MKKKTKK 120
           +MKT E+V+++S+WI +FEREDFD++ QV G  + LPK C LVKEDT  A      K KK
Sbjct: 61  RMKTTESVQNQSSWILRFEREDFDDDLQVGGAGVELPKRCCLVKEDTPVAAPPSMTKEKK 120

Query: 121 VRNGDDCLDLNLAL 132
           V +G DCLDLNL+L
Sbjct: 121 VASGVDCLDLNLSL 131

[Close]

BLAST of HG10023049 vs. NCBI nr
Match: XP_022151003.1 (protein NIM1-INTERACTING 1 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-29
Identity = 88/138 (63.77%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKEL--MIGEEEEIAAEKR 60
           MENE L+P     A EEEEE ++ME FFAL+RNFKEMRDRRRKEL  MIG+  E   EK+
Sbjct: 1   MENENLRP----AAAEEEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGE--TEKK 60

Query: 61  RKKMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDT-----AAAMKK 120
           RKKMKTA      STWIP F REDFDE+FQVRGP  +LPKPCNL+KEDT      AA+ K
Sbjct: 61  RKKMKTAP-----STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAAVAK 120

Query: 121 KTKKVRNGDDCLDLNLAL 132
           K K ++N ++CLDLNLAL
Sbjct: 121 K-KNMKNDEECLDLNLAL 126

[Close]

BLAST of HG10023049 vs. ExPASy TrEMBL
Match: A0A6J1JVD5 (uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.2e-35
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEKRRK 60
           MEN+K QPPRE IA+EEEEE VEME+F+ALVRNFKE+RDR RKE++ GE +E AAEK RK
Sbjct: 1   MENQKRQPPRETIAEEEEEE-VEMEKFYALVRNFKEIRDRWRKEVVNGEGDETAAEKTRK 60

Query: 61  KMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDT--AAAMKKKTKKV 120
           +MKT E V+++S+WI +FEREDFDE+ QV G A+ LPK C LVKEDT  AAA  KK KKV
Sbjct: 61  RMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPLKKEKKV 120

Query: 121 RNGDDCLDLNLAL 132
            +G DCLDLNL+L
Sbjct: 121 ASGVDCLDLNLSL 132

[Close]

BLAST of HG10023049 vs. ExPASy TrEMBL
Match: A0A6J1DAZ5 (protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 88/138 (63.77%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKEL--MIGEEEEIAAEKR 60
           MENE L+P     A EEEEE ++ME FFAL+RNFKEMRDRRRKEL  MIG+  E   EK+
Sbjct: 1   MENENLRP----AAAEEEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGE--TEKK 60

Query: 61  RKKMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDT-----AAAMKK 120
           RKKMKTA      STWIP F REDFDE+FQVRGP  +LPKPCNL+KEDT      AA+ K
Sbjct: 61  RKKMKTAP-----STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAAVAK 120

Query: 121 KTKKVRNGDDCLDLNLAL 132
           K K ++N ++CLDLNLAL
Sbjct: 121 K-KNMKNDEECLDLNLAL 126

[Close]

BLAST of HG10023049 vs. ExPASy TrEMBL
Match: A0A0A0K5V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 90/142 (63.38%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGE---EEEIAA-E 60
           MEN KLQP  +  A++  E+  EMERFFALVR+ KEMRD+RRKEL IG+   EEEIAA E
Sbjct: 1   MENGKLQPSPDTTAEDSLED-EEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGE 60

Query: 61  KRRKKMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKP-CNLVKEDTAAAM---- 120
           KRRK+M+ AE VE+RSTWIPKFEREDFDEEFQ    + + P P CNLVK DT AA     
Sbjct: 61  KRRKRMRAAEMVENRSTWIPKFEREDFDEEFQAL--STLPPNPCCNLVKRDTTAASTTTT 120

Query: 121 --KKKTKKVRNGDDCLDLNLAL 132
              K  KKV+NGD  LDLNLAL
Sbjct: 121 APMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of HG10023049 vs. ExPASy TrEMBL
Match: A0A5A7UYI4 (Protein NIM1-INTERACTING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00070 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.8e-28
Identity = 91/141 (64.54%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKEEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEKRRK 60
           MENEK+QP  ER A+E  EE  EMERFFALVR+FKEMRD+R KEL +GEEEE   EKRRK
Sbjct: 1   MENEKMQPLPERTAEELLEE-EEMERFFALVRSFKEMRDQRWKELNMGEEEE---EKRRK 60

Query: 61  KMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKP-CNLVKE---------DTAAA 120
           +MK  + VE+RSTWIPKFEREDFDEEFQ    AL LP+P CNL K           T AA
Sbjct: 61  RMKAGKMVENRSTWIPKFEREDFDEEFQ----ALSLPEPCCNLDKRGTRAATTTTTTTAA 120

Query: 121 MKKKTKKVRNGDDCLDLNLAL 132
           MK K K+V+NG+  LDLNLAL
Sbjct: 121 MKNK-KRVKNGEVSLDLNLAL 132

[Close]

BLAST of HG10023049 vs. ExPASy TrEMBL
Match: A0A6J1H831 (protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 82/144 (56.94%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 1   MENEKLQPPRERIAKE--------EEEEVVEMERFFALVRNFKEMRDRRRKELMIG--EE 60
           ME + L+   +R+A          EEEE ++ME FFALVRNFKEMRD+RRKELMIG   E
Sbjct: 1   MEKQSLKTTGKRVASAAAAAAVDGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGE 60

Query: 61  EEIAAEKRRKKMKTAEAVEHRSTWIPKFEREDFDEEFQVRGPALILPKPCNLVKEDTAA- 120
           +  AAE R++KMKT   VE+RS WIP+FEREDFDEEFQVRGPA          KE+ AA 
Sbjct: 61  KAAAAEMRKRKMKT---VENRSAWIPRFEREDFDEEFQVRGPA----------KEEAAAA 120

Query: 121 --AMKKKTKKVRNGDDCLDLNLAL 132
             A  KK KKV+N +D LDLNL+L
Sbjct: 121 AIATAKKKKKVKNEEDILDLNLSL 131

[Close]

BLAST of HG10023049 vs. TAIR 10
Match: AT1G02450.1 (NIM1-interacting 1 )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 37/116 (31.90%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 16  EEEEEVVEMERFFALVRNFKEMRDRRRKELMIGEEEEIAAEKRRKKMKTAEAVEHRSTWI 75
           EEEEE  +++ FF L+++++E R RRR+EL         AE      + +   E     +
Sbjct: 38  EEEEEEKKIDTFFKLIKHYQEARKRRREEL---------AENSGVVRRKSNGGERSGIVV 97

Query: 76  PKFEREDFDEEFQVRGPALILPKPCNLVKEDTAAAMKKKTKKVRNGDDCLDLNLAL 132
           P F+ EDF +      P L+     +  +E+T    ++   + RN D  LDLNLAL
Sbjct: 98  PAFQPEDFSQCRTGLKPPLMFVS--DHKEENTKVEQEEDQTEERNEDKALDLNLAL 142

The following BLAST results are available for this feature:

BLAST of HG10023049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898983.1	4.5e-43	80.58	protein NIM1-INTERACTING 1-like [Benincasa hispida]	[more]
XP_022991628.1	4.5e-35	68.42	uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharac...	[more]
XP_023547822.1	2.3e-31	63.50	uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo]	[more]
KAG6575739.1	8.8e-31	62.69	hypothetical protein SDJN03_26378, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022151003.1	2.2e-29	63.77	protein NIM1-INTERACTING 1 [Momordica charantia]	[more]

BLAST of HG10023049 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVD5	2.2e-35	68.42	uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189...	[more]
A0A6J1DAZ5	1.1e-29	63.77	protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 S...	[more]
A0A0A0K5V7	2.0e-28	63.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1	[more]
A0A5A7UYI4	5.8e-28	64.54	Protein NIM1-INTERACTING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1H831	1.7e-24	56.94	protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV...	[more]

BLAST of HG10023049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02450.1	1.2e-04	31.90	NIM1-interacting 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 16..128 e-value: 2.0E-17 score: 63.8
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 1..131
None	No IPR available	PANTHER	PTHR33669:SF1	NPR1/NH1-INTERACTING PROTEIN-RELATED	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023049.1	HG10023049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus