HG10023045 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023045
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription factor MYB108-like protein
Location	Chr05: 30750535 .. 30751031 (+)
RNA-Seq Expression	HG10023045
Synteny	HG10023045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATACGTGTGGATGCCTCGTTTGCTCGAACGTATCCAAGCTTCAACTGACTCGACCACCACCACCGTTGATATCATCCAACCACCACACCCACCTCTCGAGTTGACCCAATTGTCACCGTCTGGATCTAATAAAGTCAGCCTTCACGTGGGTCCCACAACTTCATCGTCAGATTCTATATCTGATCAGGTTCAAAATCATTACTAAATCTTTAAAACAAAATTTTTATTGATAGATTTATGATATATTTAATCATTTAATCATATTCTTTGTTATAGGTCCAATTTCAAGTTTCGTCTATTTCAGACGTGACGGAGAACTTTAACTTGGTAGATACGAGCGAGGAGGATAGGATGGCGATGCTAATGGAACACGGCTGTGACGGAGAGGCGATGAACGAGTGGATAGGTGGCGGAGAGTTACTGGAGAATGGGTTTTGGAATGAAGAAGATATGTGGTCGTTCTTGCAACAACAATTTGATGATGATGTTTAA

mRNA sequence

ATGCGATACGTGTGGATGCCTCGTTTGCTCGAACGTATCCAAGCTTCAACTGACTCGACCACCACCACCGTTGATATCATCCAACCACCACACCCACCTCTCGAGTTGACCCAATTGTCACCGTCTGGATCTAATAAAGTCAGCCTTCACGTGGGTCCCACAACTTCATCGTCAGATTCTATATCTGATCAGGTCCAATTTCAAGTTTCGTCTATTTCAGACGTGACGGAGAACTTTAACTTGGTAGATACGAGCGAGGAGGATAGGATGGCGATGCTAATGGAACACGGCTGTGACGGAGAGGCGATGAACGAGTGGATAGGTGGCGGAGAGTTACTGGAGAATGGGTTTTGGAATGAAGAAGATATGTGGTCGTTCTTGCAACAACAATTTGATGATGATGTTTAA

Coding sequence (CDS)

ATGCGATACGTGTGGATGCCTCGTTTGCTCGAACGTATCCAAGCTTCAACTGACTCGACCACCACCACCGTTGATATCATCCAACCACCACACCCACCTCTCGAGTTGACCCAATTGTCACCGTCTGGATCTAATAAAGTCAGCCTTCACGTGGGTCCCACAACTTCATCGTCAGATTCTATATCTGATCAGGTCCAATTTCAAGTTTCGTCTATTTCAGACGTGACGGAGAACTTTAACTTGGTAGATACGAGCGAGGAGGATAGGATGGCGATGCTAATGGAACACGGCTGTGACGGAGAGGCGATGAACGAGTGGATAGGTGGCGGAGAGTTACTGGAGAATGGGTTTTGGAATGAAGAAGATATGTGGTCGTTCTTGCAACAACAATTTGATGATGATGTTTAA

Protein sequence

MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDSISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCDGEAMNEWIGGGELLENGFWNEEDMWSFLQQQFDDDV

Homology

[Close]

BLAST of HG10023045 vs. NCBI nr
Match: XP_038899114.1 (transcription factor MYB78-like [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST+TTVD+IQPPHPPLELTQLSPSGS+ ++ HV PTTSSSDS
Sbjct: 144 MRYVWMPRLLERIQASTDSTSTTVDVIQPPHPPLELTQLSPSGSSWINPHVAPTTSSSDS 203

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCDGEAMNEWIGGGELLENGFWNE 120
           ISDQVQ QVSS+SDV ENFN V TSEED M MLMEHGCDGEAMN WIGGGELLENGFWNE
Sbjct: 204 ISDQVQLQVSSVSDVVENFNSVGTSEEDGMVMLMEHGCDGEAMNGWIGGGELLENGFWNE 263

Query: 121 EDMWSFLQQQFDDDV 136
           EDMWSFLQQQ  DDV
Sbjct: 264 EDMWSFLQQQLGDDV 278

[Close]

BLAST of HG10023045 vs. NCBI nr
Match: XP_004136147.2 (transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein Csa_016868 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 6.2e-56
Identity = 114/136 (83.82%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDSTTT VD+IQPPHPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTTTIVDVIQPPHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCDGEAM-NEWIGGGELLENGFWN 120
           ISDQVQ QVS +SD+TENFN+VD SEED M MLMEHGCDGEAM NEWIGGGE+LENG WN
Sbjct: 205 ISDQVQLQVSPVSDMTENFNMVDKSEEDGMMMLMEHGCDGEAMINEWIGGGEVLENGLWN 264

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMW+ LQQQF DDV
Sbjct: 265 EEDMWTLLQQQFGDDV 280

[Close]

BLAST of HG10023045 vs. NCBI nr
Match: TYJ96893.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 115/136 (84.56%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST TTVD+IQP HPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCD-GEAMNEWIGGGELLENGFWN 120
           ISDQVQ QVS ISDV ENFN+VDT+EEDR+ MLMEHGCD GEAMNEWIGG ELLENG WN
Sbjct: 205 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 264

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMWS LQQQF DDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of HG10023045 vs. NCBI nr
Match: KAA0058537.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 115/136 (84.56%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST TTVD+IQP HPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 141 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 200

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCD-GEAMNEWIGGGELLENGFWN 120
           ISDQVQ QVS ISDV ENFN+VDT+EEDR+ MLMEHGCD GEAMNEWIGG ELLENG WN
Sbjct: 201 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 260

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMWS LQQQF DDV
Sbjct: 261 EEDMWSLLQQQFGDDV 276

[Close]

BLAST of HG10023045 vs. NCBI nr
Match: XP_008461407.1 (PREDICTED: transcription factor MYB108-like [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 7.6e-54
Identity = 112/136 (82.35%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST TTVD+IQP HPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCD-GEAMNEWIGGGELLENGFWN 120
           I DQVQ QVS +SDV ENFN+VDT+EEDR+ MLMEHGCD  EAMNEWIGG ELLENG WN
Sbjct: 205 IFDQVQLQVSPVSDVVENFNMVDTTEEDRVVMLMEHGCDVEEAMNEWIGGEELLENGLWN 264

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMWS LQQQF DDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of HG10023045 vs. ExPASy TrEMBL
Match: A0A0A0K5V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56
Identity = 114/136 (83.82%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDSTTT VD+IQPPHPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 141 MRYVWMPRLLERIQASTDSTTTIVDVIQPPHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 200

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCDGEAM-NEWIGGGELLENGFWN 120
           ISDQVQ QVS +SD+TENFN+VD SEED M MLMEHGCDGEAM NEWIGGGE+LENG WN
Sbjct: 201 ISDQVQLQVSPVSDMTENFNMVDKSEEDGMMMLMEHGCDGEAMINEWIGGGEVLENGLWN 260

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMW+ LQQQF DDV
Sbjct: 261 EEDMWTLLQQQFGDDV 276

[Close]

BLAST of HG10023045 vs. ExPASy TrEMBL
Match: A0A5D3BC50 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00030 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.7e-56
Identity = 115/136 (84.56%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST TTVD+IQP HPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCD-GEAMNEWIGGGELLENGFWN 120
           ISDQVQ QVS ISDV ENFN+VDT+EEDR+ MLMEHGCD GEAMNEWIGG ELLENG WN
Sbjct: 205 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 264

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMWS LQQQF DDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of HG10023045 vs. ExPASy TrEMBL
Match: A0A5A7UUY5 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00030 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.7e-56
Identity = 115/136 (84.56%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST TTVD+IQP HPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 141 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 200

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCD-GEAMNEWIGGGELLENGFWN 120
           ISDQVQ QVS ISDV ENFN+VDT+EEDR+ MLMEHGCD GEAMNEWIGG ELLENG WN
Sbjct: 201 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 260

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMWS LQQQF DDV
Sbjct: 261 EEDMWSLLQQQFGDDV 276

[Close]

BLAST of HG10023045 vs. ExPASy TrEMBL
Match: A0A1S3CEB9 (transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.7e-54
Identity = 112/136 (82.35%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTDSTTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSSDS 60
           MRYVWMPRLLERIQASTDST TTVD+IQP HPPLELTQ SPSGS+ V+ HV PTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQFQVSSISDVTENFNLVDTSEEDRMAMLMEHGCD-GEAMNEWIGGGELLENGFWN 120
           I DQVQ QVS +SDV ENFN+VDT+EEDR+ MLMEHGCD  EAMNEWIGG ELLENG WN
Sbjct: 205 IFDQVQLQVSPVSDVVENFNMVDTTEEDRVVMLMEHGCDVEEAMNEWIGGEELLENGLWN 264

Query: 121 EEDMWSFLQQQFDDDV 136
           EEDMWS LQQQF DDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of HG10023045 vs. ExPASy TrEMBL
Match: A0A6J1DCK9 (transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.1e-37
Identity = 91/138 (65.94%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MRYVWMPRLLERIQASTD--STTTTVDIIQPPHPPLELTQLSPSGSNKVSLHVGPTTSSS 60
           MRYVW+PRLLERIQASTD  +     D  QPPHP L+ T  SPS S  V+ H+ P TSSS
Sbjct: 141 MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 200

Query: 61  DSISDQVQFQVSSISDVTENFNLVDTSEE-DRMAMLMEHGCDGEAMNEWIGGGELLENGF 120
           DS SDQVQ QVS +SDVTENFNLV   E+ D   MLMEH CDG A+N WIGGGE L++GF
Sbjct: 201 DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 260

Query: 121 WNEEDMWSFLQQQFDDDV 136
           W+EED+W FLQQQF DDV
Sbjct: 261 WDEEDLW-FLQQQFGDDV 277

The following BLAST results are available for this feature:

BLAST of HG10023045 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899114.1	1.3e-58	86.67	transcription factor MYB78-like [Benincasa hispida]	[more]
XP_004136147.2	6.2e-56	83.82	transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein ...	[more]
TYJ96893.1	1.4e-55	84.56	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]
KAA0058537.1	1.4e-55	84.56	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]
XP_008461407.1	7.6e-54	82.35	PREDICTED: transcription factor MYB108-like [Cucumis melo]	[more]

BLAST of HG10023045 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5V3	3.0e-56	83.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1	[more]
A0A5D3BC50	6.7e-56	84.56	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UUY5	6.7e-56	84.56	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CEB9	3.7e-54	82.35	transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV...	[more]
A0A6J1DCK9	3.1e-37	65.94	transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 S...	[more]

BLAST of HG10023045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..62
None	No IPR available	PANTHER	PTHR45675:SF58	SUBFAMILY NOT NAMED	coord: 1..123
IPR044676	MYB-like transcription factor EOBI/EOBII-like, plant	PANTHER	PTHR45675	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023045.1	HG10023045.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding