HG10023044 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023044
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription factor MYB-like
Location	Chr05: 30749377 .. 30749595 (+)
RNA-Seq Expression	HG10023044
Synteny	HG10023044

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAAAATGAGAGGTTTTAGGTCTGCAGAACCTCAGAGGACAAAAGAGGAGGAGATGGACGTACGGAAAGGCCCTTGGACGGCGGAGGAGGATTCCGTTCTGTTCAATTATATTAATTGCCACGGCGAAGGCCGCTGGAACGCTGTTGCTCGTTGCACCGGTTCGTATCGAGTGTCAGGCGTGGTAGTATCACTCTCCAAGAACAGCTCTTGA

mRNA sequence

ATGGATGTTAAAATGAGAGGTTTTAGGTCTGCAGAACCTCAGAGGACAAAAGAGGAGGAGATGGACGTACGGAAAGGCCCTTGGACGGCGGAGGAGGATTCCGTTCTGTTCAATTATATTAATTGCCACGGCGAAGGCCGCTGGAACGCTGTTGCTCGTTGCACCGGTTCGTATCGAGTGTCAGGCGTGGTAGTATCACTCTCCAAGAACAGCTCTTGA

Coding sequence (CDS)

ATGGATGTTAAAATGAGAGGTTTTAGGTCTGCAGAACCTCAGAGGACAAAAGAGGAGGAGATGGACGTACGGAAAGGCCCTTGGACGGCGGAGGAGGATTCCGTTCTGTTCAATTATATTAATTGCCACGGCGAAGGCCGCTGGAACGCTGTTGCTCGTTGCACCGGTTCGTATCGAGTGTCAGGCGTGGTAGTATCACTCTCCAAGAACAGCTCTTGA

Protein sequence

MDVKMRGFRSAEPQRTKEEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYRVSGVVVSLSKNSS

Homology

[Close]

BLAST of HG10023044 vs. NCBI nr
Match: XP_038899114.1 (transcription factor MYB78-like [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTKEEEM-DVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          MDVKMRGFRSAEPQRTKEE+M DVRKGPWTAEEDSVLFNY+N HGEGRWNAVARCTG  R
Sbjct: 1  MDVKMRGFRSAEPQRTKEEDMADVRKGPWTAEEDSVLFNYVNYHGEGRWNAVARCTGLKR 60

[Close]

BLAST of HG10023044 vs. NCBI nr
Match: TYJ96893.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSY 60
          MDVKMRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  
Sbjct: 1  MDVKMRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLK 60

[Close]

BLAST of HG10023044 vs. NCBI nr
Match: XP_004136147.2 (transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein Csa_016868 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSY 60
          MDVKMRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  
Sbjct: 1  MDVKMRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLK 60

[Close]

BLAST of HG10023044 vs. NCBI nr
Match: XP_008461407.1 (PREDICTED: transcription factor MYB108-like [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSY 60
          MDVKMRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  
Sbjct: 1  MDVKMRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLK 60

[Close]

BLAST of HG10023044 vs. NCBI nr
Match: KAA0058537.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 7.3e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 5  MRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          MRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  R
Sbjct: 1  MRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLKR 57

[Close]

BLAST of HG10023044 vs. ExPASy Swiss-Prot
Match: Q9FGY3 (Transcription factor MYB78 OS=Arabidopsis thaliana OX=3702 GN=MYB78 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.6e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 18 EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARC 55
          EEEMDVR+GPWT EED  L NYI  HGEGRWN++ARC
Sbjct: 21 EEEMDVRRGPWTVEEDLELINYIASHGEGRWNSLARC 57

[Close]

BLAST of HG10023044 vs. ExPASy Swiss-Prot
Match: Q9LDE1 (Transcription factor MYB108 OS=Arabidopsis thaliana OX=3702 GN=MYB108 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-10
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTKEEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          MD K R  ++       E+EMD+++GPWTAEED  L NYI  +GEGRWN+++RC G  R
Sbjct: 1  MDEKGRSLKN----NNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQR 55

[Close]

BLAST of HG10023044 vs. ExPASy Swiss-Prot
Match: Q9SSA1 (Transcription factor MYB57 OS=Arabidopsis thaliana OX=3702 GN=MYB57 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-10
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 3  VKMRGFRSAEPQRTKEEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          +K +G   A     KEEE  VRKGPWT EED +LFNYI  HGEG WN+VA+ +G  R
Sbjct: 5  MKKKGRVKATITSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKR 61

[Close]

BLAST of HG10023044 vs. ExPASy Swiss-Prot
Match: Q10MB4 (Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 12 EPQRTKEEEM---DVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          E   + EEE+   D+R+GPWT EED +L NYI  HGEGRWN++AR  G  R
Sbjct: 6  ERDASSEEEVMGGDLRRGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKR 56

[Close]

BLAST of HG10023044 vs. ExPASy Swiss-Prot
Match: L7R9Z0 (MYB-like transcription factor EOBI OS=Petunia hybrida OX=4102 GN=EOBI PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-08
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 19 EEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          ++++VRKGPWT EED +L NYI  HGEG WN++AR  G  R
Sbjct: 9  QDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKR 49

[Close]

BLAST of HG10023044 vs. ExPASy TrEMBL
Match: A0A5D3BC50 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00030 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSY 60
          MDVKMRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  
Sbjct: 1  MDVKMRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLK 60

[Close]

BLAST of HG10023044 vs. ExPASy TrEMBL
Match: A0A1S3CEB9 (transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSY 60
          MDVKMRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  
Sbjct: 1  MDVKMRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLK 60

[Close]

BLAST of HG10023044 vs. ExPASy TrEMBL
Match: A0A5A7UUY5 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 5  MRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          MRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  R
Sbjct: 1  MRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLKR 57

[Close]

BLAST of HG10023044 vs. ExPASy TrEMBL
Match: A0A0A0K5V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 5  MRGFRSAEPQRTK--EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          MRGFR  EPQ+ K  EEEMDVRKGPWTAEEDSVLFNY+NCHGEGRWNAVARCTG  R
Sbjct: 1  MRGFRCGEPQKIKEEEEEMDVRKGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLKR 57

[Close]

BLAST of HG10023044 vs. ExPASy TrEMBL
Match: A0A6J1DCK9 (transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.4e-14
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 7  GFRSAEPQRTK-EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          GFRSA+ Q  K EEEM+VRKGPWTAEEDSVLFNYI  HGEGRWNAVAR TG  R
Sbjct: 4  GFRSADSQMMKEEEEMEVRKGPWTAEEDSVLFNYIRSHGEGRWNAVARSTGLKR 57

[Close]

BLAST of HG10023044 vs. TAIR 10
Match: AT5G49620.1 (myb domain protein 78 )

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-12
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 18 EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARC 55
          EEEMDVR+GPWT EED  L NYI  HGEGRWN++ARC
Sbjct: 21 EEEMDVRRGPWTVEEDLELINYIASHGEGRWNSLARC 57

[Close]

BLAST of HG10023044 vs. TAIR 10
Match: AT5G49620.2 (myb domain protein 78 )

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-12
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 18 EEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARC 55
          EEEMDVR+GPWT EED  L NYI  HGEGRWN++ARC
Sbjct: 21 EEEMDVRRGPWTVEEDLELINYIASHGEGRWNSLARC 57

[Close]

BLAST of HG10023044 vs. TAIR 10
Match: AT3G06490.1 (myb domain protein 108 )

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-11
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MDVKMRGFRSAEPQRTKEEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          MD K R  ++       E+EMD+++GPWTAEED  L NYI  +GEGRWN+++RC G  R
Sbjct: 1  MDEKGRSLKN----NNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQR 55

[Close]

BLAST of HG10023044 vs. TAIR 10
Match: AT3G01530.1 (myb domain protein 57 )

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-11
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 3  VKMRGFRSAEPQRTKEEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          +K +G   A     KEEE  VRKGPWT EED +LFNYI  HGEG WN+VA+ +G  R
Sbjct: 5  MKKKGRVKATITSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKR 61

[Close]

BLAST of HG10023044 vs. TAIR 10
Match: AT2G47190.1 (myb domain protein 2 )

HSP 1 Score: 63.5 bits (153), Expect = 7.8e-11
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 16 TKEEEMDVRKGPWTAEEDSVLFNYINCHGEGRWNAVARCTGSYR 60
          T EE+ DVRKGPWT EED++L N+++ HG+ RWN +AR +G  R
Sbjct: 13 THEEDSDVRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKR 56

The following BLAST results are available for this feature:

BLAST of HG10023044 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899114.1	1.2e-21	90.00	transcription factor MYB78-like [Benincasa hispida]	[more]
TYJ96893.1	4.5e-21	85.25	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]
XP_004136147.2	4.5e-21	85.25	transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein ...	[more]
XP_008461407.1	4.5e-21	85.25	PREDICTED: transcription factor MYB108-like [Cucumis melo]	[more]
KAA0058537.1	7.3e-19	84.21	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]

BLAST of HG10023044 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGY3	7.6e-11	75.68	Transcription factor MYB78 OS=Arabidopsis thaliana OX=3702 GN=MYB78 PE=1 SV=1	[more]
Q9LDE1	3.8e-10	50.85	Transcription factor MYB108 OS=Arabidopsis thaliana OX=3702 GN=MYB108 PE=1 SV=1	[more]
Q9SSA1	4.9e-10	56.14	Transcription factor MYB57 OS=Arabidopsis thaliana OX=3702 GN=MYB57 PE=2 SV=1	[more]
Q10MB4	1.6e-08	54.90	Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 ...	[more]
L7R9Z0	6.0e-08	58.54	MYB-like transcription factor EOBI OS=Petunia hybrida OX=4102 GN=EOBI PE=2 SV=1	[more]

BLAST of HG10023044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC50	2.2e-21	85.25	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CEB9	2.2e-21	85.25	transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV...	[more]
A0A5A7UUY5	3.5e-19	84.21	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0K5V3	3.5e-19	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1	[more]
A0A6J1DCK9	3.4e-14	79.63	transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 S...	[more]

BLAST of HG10023044 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49620.1	5.4e-12	75.68	myb domain protein 78	[more]
AT5G49620.2	5.4e-12	75.68	myb domain protein 78	[more]
AT3G06490.1	2.7e-11	50.85	myb domain protein 108	[more]
AT3G01530.1	3.5e-11	56.14	myb domain protein 57	[more]
AT2G47190.1	7.8e-11	56.82	myb domain protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 25..56 e-value: 9.2E-7 score: 29.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 20..53 score: 9.323971
None	No IPR available	GENE3D	1.10.10.60		coord: 23..65 e-value: 1.4E-9 score: 39.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR45675:SF58	SUBFAMILY NOT NAMED	coord: 12..60
IPR044676	MYB-like transcription factor EOBI/EOBII-like, plant	PANTHER	PTHR45675	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	coord: 12..60
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 20..59 score: 7.282382
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 27..57 e-value: 8.18064E-6 score: 36.7846
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 21..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023044.1	HG10023044.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding