HG10022976 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022976
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAnkyrin repeat protein
LocationChr05: 30134729 .. 30135103 (-)
RNA-Seq ExpressionHG10022976
SyntenyHG10022976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGCAGCGGGAGTGTTGTTGTTTCTCATAGAGGCAAAAACGGTGTGAACGGCGGTGGCAAGAGTGTTGTGGTGTCGAGCGGTTCGGAAACTAGAGTGAGGAGCAGCAGCAGTGTTATTGTATCTCGTGGACATGGAGCTGCCATGATTCGTGGTGGTGTTGGTTCGATTTCTCATGGAGCCCATGCTAGTAAGAGCAGCAGTAGCAAAAGCACTTTTGTTTCTCAAAGTGCCCAAAGTACAAAGGGAACATCTCATGGTATTCAAACAAGCAGCAGCAGCAGCAGCGTTGTTGTTCATACTCACCACACTACAACCAGCAGCATTAGCGGTAGAGTTGTTTCTCATGGAGCTCTCAATGCTCAGCATTAA

mRNA sequence

ATGAAGAGCAGCGGGAGTGTTGTTGTTTCTCATAGAGGCAAAAACGGTGTGAACGGCGGTGGCAAGAGTGTTGTGGTGTCGAGCGGTTCGGAAACTAGAGTGAGGAGCAGCAGCAGTGTTATTGTATCTCGTGGACATGGAGCTGCCATGATTCGTGGTGGTGTTGGTTCGATTTCTCATGGAGCCCATGCTAGTAAGAGCAGCAGTAGCAAAAGCACTTTTGTTTCTCAAAGTGCCCAAAGTACAAAGGGAACATCTCATGGTATTCAAACAAGCAGCAGCAGCAGCAGCGTTGTTGTTCATACTCACCACACTACAACCAGCAGCATTAGCGGTAGAGTTGTTTCTCATGGAGCTCTCAATGCTCAGCATTAA

Coding sequence (CDS)

ATGAAGAGCAGCGGGAGTGTTGTTGTTTCTCATAGAGGCAAAAACGGTGTGAACGGCGGTGGCAAGAGTGTTGTGGTGTCGAGCGGTTCGGAAACTAGAGTGAGGAGCAGCAGCAGTGTTATTGTATCTCGTGGACATGGAGCTGCCATGATTCGTGGTGGTGTTGGTTCGATTTCTCATGGAGCCCATGCTAGTAAGAGCAGCAGTAGCAAAAGCACTTTTGTTTCTCAAAGTGCCCAAAGTACAAAGGGAACATCTCATGGTATTCAAACAAGCAGCAGCAGCAGCAGCGTTGTTGTTCATACTCACCACACTACAACCAGCAGCATTAGCGGTAGAGTTGTTTCTCATGGAGCTCTCAATGCTCAGCATTAA

Protein sequence

MKSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHGAHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALNAQH
Homology
BLAST of HG10022976 vs. NCBI nr
Match: KAA0048667.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18165.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-27
Identity = 83/122 (68.03%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 2   KSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHG 61
           KS GSVV+SHRGK G N G +SVVV+SG ETRV+S++S +VS GHGA MIRGG G  S G
Sbjct: 182 KSGGSVVISHRGKIGGNMGRRSVVVASGQETRVKSATSTVVSHGHGAGMIRGGAGLFSQG 241

Query: 62  AHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALN 121
            H SKSSSSKS F S + Q+TKG +HGI T S SSSVV HTHH TTS+I+G VVSHGA N
Sbjct: 242 IHTSKSSSSKSMFASHNVQNTKG-AHGIHT-SGSSSVVFHTHHQTTSTITGSVVSHGAFN 301

Query: 122 AQ 124
           AQ
Sbjct: 302 AQ 301

BLAST of HG10022976 vs. NCBI nr
Match: KAA0048668.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 2   KSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHG 61
           KS GSVV+SHRGK G N G +SVVVS+G ETRV+S++S +VS GHGA MIRGG G  S G
Sbjct: 182 KSGGSVVISHRGKIGGNKGRRSVVVSTGQETRVKSATSTVVSHGHGAGMIRGGAGLFSQG 241

Query: 62  AHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALN 121
            H SKSSSSKS F S + Q+TKG +HGI T S SSSV+ HTHH TTS+ISG VVSHG  N
Sbjct: 242 IHTSKSSSSKSMFASHNVQTTKG-AHGIHT-SGSSSVIFHTHHQTTSTISGSVVSHGGFN 301

Query: 122 AQ 124
           AQ
Sbjct: 302 AQ 301

BLAST of HG10022976 vs. NCBI nr
Match: KGN44963.1 (hypothetical protein Csa_016517 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-25
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 0

Query: 2   KSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHG 61
           KS  SVV+SH+GK G N G +SVVV+SG ETRV+S++S +VS GHGAAMIRGG G  SHG
Sbjct: 185 KSGSSVVISHKGKIGANRGSRSVVVASGQETRVKSATSTVVSHGHGAAMIRGGAGLFSHG 244

Query: 62  AHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALN 121
            H +   SSKS F S + Q+TKG + GI T S SSSVVVHTHH TTS++SG V SHGA N
Sbjct: 245 IH-TNHRSSKSFFSSNNIQTTKG-ADGIHT-SGSSSVVVHTHHQTTSTVSGSVFSHGAFN 304

Query: 122 AQH 125
           AQH
Sbjct: 305 AQH 304

BLAST of HG10022976 vs. ExPASy TrEMBL
Match: A0A5A7U312 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00970 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.1e-28
Identity = 83/122 (68.03%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 2   KSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHG 61
           KS GSVV+SHRGK G N G +SVVV+SG ETRV+S++S +VS GHGA MIRGG G  S G
Sbjct: 182 KSGGSVVISHRGKIGGNMGRRSVVVASGQETRVKSATSTVVSHGHGAGMIRGGAGLFSQG 241

Query: 62  AHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALN 121
            H SKSSSSKS F S + Q+TKG +HGI T S SSSVV HTHH TTS+I+G VVSHGA N
Sbjct: 242 IHTSKSSSSKSMFASHNVQNTKG-AHGIHT-SGSSSVVFHTHHQTTSTITGSVVSHGAFN 301

Query: 122 AQ 124
           AQ
Sbjct: 302 AQ 301

BLAST of HG10022976 vs. ExPASy TrEMBL
Match: A0A5A7U0E4 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00980 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.3e-28
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 2   KSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHG 61
           KS GSVV+SHRGK G N G +SVVVS+G ETRV+S++S +VS GHGA MIRGG G  S G
Sbjct: 182 KSGGSVVISHRGKIGGNKGRRSVVVSTGQETRVKSATSTVVSHGHGAGMIRGGAGLFSQG 241

Query: 62  AHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALN 121
            H SKSSSSKS F S + Q+TKG +HGI T S SSSV+ HTHH TTS+ISG VVSHG  N
Sbjct: 242 IHTSKSSSSKSMFASHNVQTTKG-AHGIHT-SGSSSVIFHTHHQTTSTISGSVVSHGGFN 301

Query: 122 AQ 124
           AQ
Sbjct: 302 AQ 301

BLAST of HG10022976 vs. ExPASy TrEMBL
Match: A0A0A0K662 (Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 0

Query: 2   KSSGSVVVSHRGKNGVNGGGKSVVVSSGSETRVRSSSSVIVSRGHGAAMIRGGVGSISHG 61
           KS  SVV+SH+GK G N G +SVVV+SG ETRV+S++S +VS GHGAAMIRGG G  SHG
Sbjct: 185 KSGSSVVISHKGKIGANRGSRSVVVASGQETRVKSATSTVVSHGHGAAMIRGGAGLFSHG 244

Query: 62  AHASKSSSSKSTFVSQSAQSTKGTSHGIQTSSSSSSVVVHTHHTTTSSISGRVVSHGALN 121
            H +   SSKS F S + Q+TKG + GI T S SSSVVVHTHH TTS++SG V SHGA N
Sbjct: 245 IH-TNHRSSKSFFSSNNIQTTKG-ADGIHT-SGSSSVVVHTHHQTTSTVSGSVFSHGAFN 304

Query: 122 AQH 125
           AQH
Sbjct: 305 AQH 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048667.11.5e-2768.03Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18165.1 Ankyrin repeat pro... [more]
KAA0048668.11.9e-2767.21Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat pro... [more]
KGN44963.18.9e-2564.23hypothetical protein Csa_016517 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3127.1e-2868.03Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
A0A5A7U0E49.3e-2867.21Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
A0A0A0K6624.3e-2564.23Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022976.1HG10022976.1mRNA