HG10022975 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022975
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ankyrin repeat protein
Location	Chr05: 30130772 .. 30130999 (-)
RNA-Seq Expression	HG10022975
Synteny	HG10022975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGTGGTGGTGTTGGTTCGATTTCTCATGGAGCCCATGCTAGTAAGAGCAGCAGCAGCAAAAGCACTTTTGTTTCTCACAGTGTTCAAAGTACAAAGGGATCATCTCATGGCATTCAAACAAGCAGCAGCAGCAGCAGCGTTGTTGTTCATACTCACCACACTACAGCCAGCACCATTGGCGGTAGCGTTGTTTCTCATGGAGCTCTCAATGCTCAACATTAA

mRNA sequence

ATGATTCGTGGTGGTGTTGGTTCGATTTCTCATGGAGCCCATGCTAGTAAGAGCAGCAGCAGCAAAAGCACTTTTGTTTCTCACAGTGTTCAAAGTACAAAGGGATCATCTCATGGCATTCAAACAAGCAGCAGCAGCAGCAGCGTTGTTGTTCATACTCACCACACTACAGCCAGCACCATTGGCGGTAGCGTTGTTTCTCATGGAGCTCTCAATGCTCAACATTAA

Coding sequence (CDS)

ATGATTCGTGGTGGTGTTGGTTCGATTTCTCATGGAGCCCATGCTAGTAAGAGCAGCAGCAGCAAAAGCACTTTTGTTTCTCACAGTGTTCAAAGTACAAAGGGATCATCTCATGGCATTCAAACAAGCAGCAGCAGCAGCAGCGTTGTTGTTCATACTCACCACACTACAGCCAGCACCATTGGCGGTAGCGTTGTTTCTCATGGAGCTCTCAATGCTCAACATTAA

Protein sequence

MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTASTIGGSVVSHGALNAQH

Homology

[Close]

BLAST of HG10022975 vs. NCBI nr
Match: KAA0048667.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18165.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-13
Identity = 54/74 (72.97%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1   MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTAST 60
           MIRGG G  S G H SKSSSSKS F SH+VQ+TKG +HGI T S SSSVV HTHH T ST
Sbjct: 230 MIRGGAGLFSQGIHTSKSSSSKSMFASHNVQNTKG-AHGIHT-SGSSSVVFHTHHQTTST 289

Query: 61  IGGSVVSHGALNAQ 75
           I GSVVSHGA NAQ
Sbjct: 290 ITGSVVSHGAFNAQ 301

[Close]

BLAST of HG10022975 vs. NCBI nr
Match: KAA0048668.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-13
Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1   MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTAST 60
           MIRGG G  S G H SKSSSSKS F SH+VQ+TKG +HGI T S SSSV+ HTHH T ST
Sbjct: 230 MIRGGAGLFSQGIHTSKSSSSKSMFASHNVQTTKG-AHGIHT-SGSSSVIFHTHHQTTST 289

Query: 61  IGGSVVSHGALNAQ 75
           I GSVVSHG  NAQ
Sbjct: 290 ISGSVVSHGGFNAQ 301

[Close]

BLAST of HG10022975 vs. NCBI nr
Match: KGN44963.1 (hypothetical protein Csa_016517 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1   MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTAST 60
           MIRGG G  SHG H +   SSKS F S+++Q+TKG+  GI T S SSSVVVHTHH T ST
Sbjct: 233 MIRGGAGLFSHGIH-TNHRSSKSFFSSNNIQTTKGAD-GIHT-SGSSSVVVHTHHQTTST 292

Query: 61  IGGSVVSHGALNAQH 76
           + GSV SHGA NAQH
Sbjct: 293 VSGSVFSHGAFNAQH 304

[Close]

BLAST of HG10022975 vs. ExPASy TrEMBL
Match: A0A5A7U312 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00970 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.9e-14
Identity = 54/74 (72.97%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1   MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTAST 60
           MIRGG G  S G H SKSSSSKS F SH+VQ+TKG +HGI T S SSSVV HTHH T ST
Sbjct: 230 MIRGGAGLFSQGIHTSKSSSSKSMFASHNVQNTKG-AHGIHT-SGSSSVVFHTHHQTTST 289

Query: 61  IGGSVVSHGALNAQ 75
           I GSVVSHGA NAQ
Sbjct: 290 ITGSVVSHGAFNAQ 301

[Close]

BLAST of HG10022975 vs. ExPASy TrEMBL
Match: A0A5A7U0E4 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00980 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1   MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTAST 60
           MIRGG G  S G H SKSSSSKS F SH+VQ+TKG +HGI T S SSSV+ HTHH T ST
Sbjct: 230 MIRGGAGLFSQGIHTSKSSSSKSMFASHNVQTTKG-AHGIHT-SGSSSVIFHTHHQTTST 289

Query: 61  IGGSVVSHGALNAQ 75
           I GSVVSHG  NAQ
Sbjct: 290 ISGSVVSHGGFNAQ 301

[Close]

BLAST of HG10022975 vs. ExPASy TrEMBL
Match: A0A0A0K662 (Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.3e-10
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1   MIRGGVGSISHGAHASKSSSSKSTFVSHSVQSTKGSSHGIQTSSSSSSVVVHTHHTTAST 60
           MIRGG G  SHG H +   SSKS F S+++Q+TKG+  GI T S SSSVVVHTHH T ST
Sbjct: 233 MIRGGAGLFSHGIH-TNHRSSKSFFSSNNIQTTKGAD-GIHT-SGSSSVVVHTHHQTTST 292

Query: 61  IGGSVVSHGALNAQH 76
           + GSV SHGA NAQH
Sbjct: 293 VSGSVFSHGAFNAQH 304

The following BLAST results are available for this feature:

BLAST of HG10022975 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048667.1	1.6e-13	72.97	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18165.1 Ankyrin repeat pro...	[more]
KAA0048668.1	3.6e-13	70.27	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat pro...	[more]
KGN44963.1	1.1e-09	64.00	hypothetical protein Csa_016517 [Cucumis sativus]	[more]

BLAST of HG10022975 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U312	7.9e-14	72.97	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A5A7U0E4	1.8e-13	70.27	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A0A0K662	5.3e-10	64.00	Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1	[more]

BLAST of HG10022975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022975.1	HG10022975.1	mRNA