HG10022972 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022972
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Location	Chr05: 30090615 .. 30092599 (+)
RNA-Seq Expression	HG10022972
Synteny	HG10022972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTTCCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTTTTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATAGGTATTGTAATTGCAAATTAGTTCCCTATACAGCATTTCTATTTGTTTGCTTTCAGTCAACTAGAGCATACTATACTATACACTGAAATGCTAACCATTTTTGTTCTCTCAACAGTAATTTTAGTGAACAATTAAGTTTATTCTATTCTAAGTTTTACATAGGTTTTCTACTCACTTGCTGAACCTCCCTCCCATAGCCGATTGCTGGTTGGATGGTCACTCGATACTCATTTTTTCTGTATGTACCAAAAAAAAAAACAAAAAGATATATTATTATCCACATCCTTTTTCCTTGTATAATTTGTGCTTTAAAAAAGACTATATTATAAAGAAATGGTTACCCCTCAAATTTGTCATATGTTTAAGAAAAACTCTTTTTCTTTCAAAAGTTGCAATATTACCCTTGACTTTTCATAAACATTTCAAAACTATCATTGGAGTAAAAATCCTTTAAAATGTTGGATAGAAGTTTGAGACCTAGAATAATGTGGTAGTGACCTAGAACGGAAATATGGATTGGCACCAGTTCTAGGTCACTGCCACACTATTTCAAGTCTCTAACTTTTATTGAAAGTTTTAAAAGATGCTTACTTCAAGAGTAGTCTTGAAACCTTTAGGAAAGGTCAAGATCAATATTGTAACTTTTGAATGGATGGAGGTATTTTTGAAACAAAGGACAAGGTTGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATTTAACCTACAAAAAAAGTAACCATCTACCTCTTCAAGCTACTCAATGTCTGTGTTAGATTGCCTTCTAATTGATTTCAACAGCTTTGACTTATCAATTACAGATAAGCCTAGTTCTTTTGGTTGTTCTACATCAACTGGGATGAAGTATTTGCTTTCTCTGTTTTCTCCTCTTATGCCTCAAAATCAATCTACTTCTTTGTTTATGATGACTGTATGCTCACAAATTTGGTCTGTACCATCTATGCTGTTATCAATGAGGTTTCGTGATGTGCTAATCACTTTGTGTTGCAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAA

mRNA sequence

ATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTTCCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTTTTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAA

Coding sequence (CDS)

ATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTTCCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTTTTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAA

Protein sequence

MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQKNS

Homology

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BLAST of HG10022972 vs. NCBI nr
Match: XP_038897008.1 (large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 597.0 bits (1538), Expect = 9.3e-167
Identity = 296/319 (92.79%), Postives = 308/319 (96.55%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           MSATFPTSSVVSSSHSNEFIK FYL+SKGNVSF+S+ RVPWKFMRNIQPSLG+ CIMLKS
Sbjct: 1   MSATFPTSSVVSSSHSNEFIKVFYLKSKGNVSFDSHCRVPWKFMRNIQPSLGDSCIMLKS 60

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW D +GDIEEMGSPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 61  TSIKCVKPTYQSLFEDNSIITDWED-KGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLER 120

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRV K VKDYPFGTPVQISVDVTRKEK+LRLDGIVKTVITL
Sbjct: 121 LGLEKLSTDVSKSRASAMGLRVRKVVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITL 180

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCE APEC+FSNFSIILSEEPIEEPDVIN+G ISGQDMFKTYDGNSDEDDEELVDL
Sbjct: 181 NCYRCCELAPECIFSNFSIILSEEPIEEPDVINMGIISGQDMFKTYDGNSDEDDEELVDL 240

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFP +EKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 241 DDQLYFPLIEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLK+QMQKNS
Sbjct: 301 KKNDFGPLGNLKKQMQKNS 318

[Close]

BLAST of HG10022972 vs. NCBI nr
Match: KAA0067976.1 (uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa])

HSP 1 Score: 591.7 bits (1524), Expect = 3.9e-165
Identity = 288/319 (90.28%), Postives = 305/319 (95.61%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KS
Sbjct: 70  MLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 129

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 130 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLER 189

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 190 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 249

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 250 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 309

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 310 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 369

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 370 KKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of HG10022972 vs. NCBI nr
Match: XP_008451552.1 (PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo])

HSP 1 Score: 589.7 bits (1519), Expect = 1.5e-164
Identity = 287/319 (89.97%), Postives = 304/319 (95.30%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KS
Sbjct: 53  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 112

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 113 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 172

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 173 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 232

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 233 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 292

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 293 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 352

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 353 KKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of HG10022972 vs. NCBI nr
Match: XP_008451550.1 (PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo])

HSP 1 Score: 589.7 bits (1519), Expect = 1.5e-164
Identity = 287/319 (89.97%), Postives = 304/319 (95.30%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KS
Sbjct: 70  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 129

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 130 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 189

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 190 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 249

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 250 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 309

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 310 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 369

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 370 KKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of HG10022972 vs. NCBI nr
Match: TYK18147.1 (uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.3e-163
Identity = 286/319 (89.66%), Postives = 302/319 (94.67%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS  R PW+FMRNIQPSLG+PCI +KS
Sbjct: 53  MLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSLLRAPWRFMRNIQPSLGDPCIKMKS 112

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 113 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLER 172

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 173 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 232

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 233 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 292

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 293 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 352

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 353 KKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of HG10022972 vs. ExPASy Swiss-Prot
Match: Q9LT27 (Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19810 PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.7e-83
Identity = 154/247 (62.35%), Postives = 195/247 (78.95%), Query Frame = 0


Query: 71  QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDV 130
           +S  E ++I  DW DQE +IE+ GSPW+G+V+Y+RN+SV+HVEYCTTLERLGL +LSTDV
Sbjct: 73  ESFTETSTIDMDWEDQE-EIEDTGSPWEGSVMYRRNASVTHVEYCTTLERLGLGRLSTDV 132

Query: 131 SKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAP 190
           SK RAS MGLRVTK VKDYP GTPVQ+SVDV RK+K+LRLDGIV+TVITL C RC E   
Sbjct: 133 SKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVRTVITLGCNRCGESTG 192

Query: 191 ECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVE 250
           E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+  +D +D+L+FPP  
Sbjct: 193 ESIFSNFSLLLTEEPVEEPDVIDLGFTFGND--KEEGEDDDDNDDSWIDWEDKLHFPPEV 252

Query: 251 KEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGN 310
           KEIDISK+IRD++HLEIT+ AICD  CKGMCL CG NLN   C+C ++  K   +GPLGN
Sbjct: 253 KEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGREE-KDKGYGPLGN 312

Query: 311 LKRQMQK 318
           L+ QMQ+
Sbjct: 313 LREQMQQ 315

[Close]

BLAST of HG10022972 vs. ExPASy Swiss-Prot
Match: A0A1D6HQ92 (Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Zea mays OX=4577 GN=GRMZM2G433025 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.8e-55
Identity = 118/231 (51.08%), Postives = 163/231 (70.56%), Query Frame = 0


Query: 84  VDQEGDIEEMG--SPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR 143
           V+ E D  + G  SPW+GAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL 
Sbjct: 63  VEPEPDSIDDGLPSPWEGAVVYRRDAAVQHLEYASTLERLGLGDLSSPDSRARAADLGLA 122

Query: 144 --VTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSI 203
                +    P  TPV +SVDVTR+  RLRLDGIV+TVITL C+RC EPAP+ +F+NFS+
Sbjct: 123 GGTLDSTGAQP-RTPVLVSVDVTRRRGRLRLDGIVRTVITLGCFRCAEPAPQGIFANFSL 182

Query: 204 ILSEEPI-EEPDVINIGTISGQDMFK-------TYDGNSDEDDEELVDLDDQLYFPPVEK 263
           +L+E+P+ EEPD   +GTI  +D  K         DG+ D      +D DD+L+FP  +K
Sbjct: 183 LLTEDPVEEEPD---LGTIFQEDDDKGGASLACAMDGDQD------IDWDDRLHFPAADK 242

Query: 264 EIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLN-TGSCNCSKQAVK 302
           EIDISK+IRD++HLEIT++A+C+P CKG+CL CG NLN T SC C  + V+
Sbjct: 243 EIDISKHIRDMIHLEITLDAVCNPNCKGLCLTCGANLNTTSSCTCKPRNVQ 283

[Close]

BLAST of HG10022972 vs. ExPASy TrEMBL
Match: A0A5A7VN29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001640 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 1.9e-165
Identity = 288/319 (90.28%), Postives = 305/319 (95.61%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KS
Sbjct: 70  MLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 129

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 130 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLER 189

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 190 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 249

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 250 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 309

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 310 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 369

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 370 KKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of HG10022972 vs. ExPASy TrEMBL
Match: A0A1S3BR50 (uncharacterized protein LOC103492797 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492797 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 7.2e-165
Identity = 287/319 (89.97%), Postives = 304/319 (95.30%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KS
Sbjct: 53  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 112

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 113 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 172

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 173 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 232

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 233 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 292

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 293 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 352

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 353 KKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of HG10022972 vs. ExPASy TrEMBL
Match: A0A1S3BSU8 (uncharacterized protein LOC103492797 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492797 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 7.2e-165
Identity = 287/319 (89.97%), Postives = 304/319 (95.30%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +KS
Sbjct: 70  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 129

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 130 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 189

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 190 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 249

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 250 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 309

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 310 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 369

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 370 KKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of HG10022972 vs. ExPASy TrEMBL
Match: A0A5D3D2J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00780 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 6.1e-164
Identity = 286/319 (89.66%), Postives = 302/319 (94.67%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS  R PW+FMRNIQPSLG+PCI +KS
Sbjct: 53  MLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSLLRAPWRFMRNIQPSLGDPCIKMKS 112

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           TSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 113 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLER 172

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVITL
Sbjct: 173 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 232

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE VDL
Sbjct: 233 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 292

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 293 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 352

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLGNLKR+MQ NS
Sbjct: 353 KKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of HG10022972 vs. ExPASy TrEMBL
Match: A0A0A0KAY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398180 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.1e-160
Identity = 279/319 (87.46%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 1   MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 60
           M ATFPTSSVVSSSHSNEFI  FY +SKG VSF+S+FRVPW+ +RNIQPSLG+PCI +KS
Sbjct: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60

Query: 61  TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 120
           T+IKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA+IYKRNSSVSHVEYCTTLER
Sbjct: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120

Query: 121 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK K+LRLDGIVKTVITL
Sbjct: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180

Query: 181 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 240
           NCY CCEPAPEC+FSNFSIILSEEPIEEPDVIN+G ISG+DMFKT +GNSDEDDEEL+DL
Sbjct: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240

Query: 241 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300
           DDQLYFPP+ KEIDISKNIRDILHLEITMN ICDPGCKG+CLNCGINLNTGSC CSKQAV
Sbjct: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300

Query: 301 KKNDFGPLGNLKRQMQKNS 320
           KKNDFGPLG+LKR+MQ NS
Sbjct: 301 KKNDFGPLGDLKRRMQNNS 319

[Close]

BLAST of HG10022972 vs. TAIR 10
Match: AT3G19810.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-84
Identity = 154/247 (62.35%), Postives = 195/247 (78.95%), Query Frame = 0


Query: 71  QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDV 130
           +S  E ++I  DW DQE +IE+ GSPW+G+V+Y+RN+SV+HVEYCTTLERLGL +LSTDV
Sbjct: 73  ESFTETSTIDMDWEDQE-EIEDTGSPWEGSVMYRRNASVTHVEYCTTLERLGLGRLSTDV 132

Query: 131 SKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAP 190
           SK RAS MGLRVTK VKDYP GTPVQ+SVDV RK+K+LRLDGIV+TVITL C RC E   
Sbjct: 133 SKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVRTVITLGCNRCGESTG 192

Query: 191 ECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVE 250
           E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+  +D +D+L+FPP  
Sbjct: 193 ESIFSNFSLLLTEEPVEEPDVIDLGFTFGND--KEEGEDDDDNDDSWIDWEDKLHFPPEV 252

Query: 251 KEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGN 310
           KEIDISK+IRD++HLEIT+ AICD  CKGMCL CG NLN   C+C ++  K   +GPLGN
Sbjct: 253 KEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGREE-KDKGYGPLGN 312

Query: 311 LKRQMQK 318
           L+ QMQ+
Sbjct: 313 LREQMQQ 315

The following BLAST results are available for this feature:

BLAST of HG10022972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897008.1	9.3e-167	92.79	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-l...	[more]
KAA0067976.1	3.9e-165	90.28	uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]	[more]
XP_008451552.1	1.5e-164	89.97	PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]	[more]
XP_008451550.1	1.5e-164	89.97	PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]	[more]
TYK18147.1	1.3e-163	89.66	uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]	[more]

BLAST of HG10022972 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT27	1.7e-83	62.35	Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic O...	[more]
A0A1D6HQ92	5.8e-55	51.08	Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic O...	[more]

BLAST of HG10022972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VN29	1.9e-165	90.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BR50	7.2e-165	89.97	uncharacterized protein LOC103492797 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BSU8	7.2e-165	89.97	uncharacterized protein LOC103492797 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D2J4	6.1e-164	89.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAY7	1.1e-160	87.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398180 PE=4 SV=1	[more]

BLAST of HG10022972 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19810.1	1.2e-84	62.35	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 170..312 e-value: 8.9E-28 score: 96.8
None	No IPR available	PANTHER	PTHR34374	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC	coord: 57..317

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022972.1	HG10022972.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0009507	chloroplast