HG10022959 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022959
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionserine/arginine-rich-splicing factor SR34-like
LocationChr05: 29982050 .. 29985586 (-)
RNA-Seq ExpressionHG10022959
SyntenyHG10022959
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGCCGTGCCAGCAGAACTGTCTATGTCGGAAATCTTCCGGGTGATATTCGTGAAAAAGAAGTGGAAGATTTATTTTACAAGGTAATTCATCGTAATTTTCTATTCGCGCGTTGTTTTGGCGCCCGTATGGATATTTTTGTCTTTATGGTTTGAGTTTTTAGGTAGACTGCAGTTTTTTAGATTATTTGACTACACCTTTATTATGGGCAGCACGTAAACCGTGTAAATTTTTGTCATTTTGGTGCTGCATGAAATGTTTGATCCATTTTCTTTCTTCTGTAGACTGTAAGTGGCTCTCATGTAGTAGGAGGGCAAGCATAGAAAGCTAAATGTTTTGTTTTCGATAGTTGTGATGACCTTGTAACTTATGTGGCTACCTTTAAATTAGAGGCGTCCTTTGCCCCTTCTCCCTCTTAAGGAGCCTGCTTTCTCCTCTTCGAAGGTTCAAATTTCTAAGAAAGTGTGAAATTATTGACTGAGTTTTGCATGAGAGGTGAAAATTCAGGAGTCAGGACCATCTCTAGAGACTCTTCTTTCGTGTTGCAACTGCAATGGTGTGTACTTCATGACCTTTGGGTTTCTTGACATGTTATATAGGGTGTCACTCTATGATTAAATACGTGCTCATGAACCCTCCTTTTCATAGCAAAAGACGAGTCCATGGCAGGCTTGTTTTATCGCCATTATGAGGCATTTGGCTGGAAAGGAATAGCATGCTTTTAAAGGGGTGGTGATGTTCGGTAAGGAGCTTTGGGGAGCGATTAGATCTAACTCTTCTTTGGGGGTGCATGTTTAATTAAGATTTTTTGTAATTGTCAACTTGCATCATTCTTTCTTATTGGGATCCTTTAATGAAATTAGTTTTTTTTTTCTATGCCCTTGTATGTTAATCAGGATTTCACTATATGAAACCTCGGTTGTTTATCAATATGTATCTTATGTGGTTTTTCTTTCTTAAAGGTTCAAGATATTCCGAGACAGGATTAAAATAATATTGGAGTTTATTTTTTTGGAAGTAATTAATTTAAATCTGTTGTTGTTTGACATTTTTATTATAGTATGGTCGCATAGCCCACATTGATCTTAAGGTTCCACCAAGACCACCTGGTTATGCATTTGTTGAGGTGAGCTTTTTGCACATGAAGTACTATTTATTCTCTTTCTTTTCTAATATTTTTTACTTATCATATCAATATGGATTGAGTGAATGTAGTTTGAAGATGCCGAAGATGCTCAAGATGCGATTCGTGGTCGCGATGGCTATGATTTTGATGGCCATAGATTGCGCGTGAGAACTTATTTCAATTGTTACAAAAATTGGTTGTTTTGTACTTCATTGCTTTACAGTTGTCATTTATGCATTGTTTGTTTGTGTTTTTAGGTGGAACTTGCTCATGGTGGTCGTGGTCATTCATCATCTAATGATCGCTATAGTAGTCATGGAGGGAGCCGAGGTGGGCGTGGAGTATCTCGGCGCTCTGATTATCGTGGTATATTATCACTTCTTAGGTGCTCCATACAATGTTTTGATGTTGTGAACATTGGATTTTGTAATATTTGTTCATTTGTAAATGCAGTATTAGTCACAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGTAAGCATCATTCTGTTTGACATGAAGTGTATGTGCATAGGCACTCTAGTTTTTCTGATTGACGCTGACCATCATACTATTATTATTACTACTTTTTGATTGATGCTGACCACCATTTTATTTAATGTTGAAGGATCACATGCGGCGAGCTGGGGACGTTTGTTTCTCCCAAGTGTTTCGTGATGGTAGTGGTAAGATACCTAGTGATGAAGACTTCAAATTCTCTATAGTGTGATGTTGAGAACTAATTAGCTATCCATTTCAATGTGTGGTAGGGACCACAGGGATTGTGGATTACACCAACTATGATGACATGAAGTATGCTGTAAGTTGTTTTTATCTCTGTTCTAAGACTTTTGAAATATTGAGGTTTAATGATGACCTGCAAGAGCTTAAGCTTTGGTTTTCTTGATGAGTTATTTCTGTACTTTTCATTGCAGATTAAGAAACTTGATGACTCTGAGTTCCGCAATGCATTTTCCCGGGCATATGTTCGTGTATGAACTATACCTTCTTGTTCTATAAACCTTTTTTCTTAATGATTGCCTTCTTTTCTCTCATCTATTTTAATTTTAATTTTGGTAGGTAAGAGAATATGATTCAAAGAGGGATCTCTCCAGGAGTCCTAGTCGTGGGCGGTCATACTCTAGAGGGAGGAGTTACAGTCGCAGCCGTAGTAGAGGCCGTAGTAGGAGCAAGAGCCGCAGTAGGAGGTTGGTATATTTTCTAGCATTAAATTGGTCTAGGGCTCTTTGCACATTCTATCTTGTATTAATTATTCTCTGAACTTTATGAGCAGCAAGTCTCCAAAAGCTAAATCTTCCCAGCGGTCCCCTGTTAAATCTCGATCAAGGTCTGCTTCCCCCCCACGCTCACGATCAAAGTCATCATCTCTCTCAGGGTATGTACTCTCTTTTTGTTAACTACAATAATTTATTCTTGTGATCTTTAAGTTCAGTTTTTTAATAATATCTAACTGCAGCCATTGTTTATTATATTTATATTTATATATTTGAGTTTGTTGTCACTCAAGCAGGGTCTGTTTGTTGCACCCGTCTTTCATTGGCCAGAATGTTAGACTGGGTGAAATAAACAACATTAAAGTACTGAAAGTGAACTAATTCTTTTGTATTGCTCAAGCACGGGTCAGCAAGTGGTTTAAAATTTAGCAATGGATTTGATATTACCTTTCTGGATGCTATGTGTTTGCATGCGGTATTGTGGCTTGTACAATTATCTTGAATGTGAAACCCACCTTTTTCTTCCAAAGTCTTGGATGCATTCTTGGAATGGTGGAGATGAATACTGGACAGACTTCAAATTAGTCTGGGCATTGTGTGGGACCCTCTTTTGGAATGTTGGGTAAACTTTATCCTATTTGACTCAAGTTATTACTATTTTACATCTGATTATGTTTTCTTTTTAATAACTCTTAAACCTGGCCTTCCCCTTATCAATTGTGAATATTTTTGTTCAACAACTGGGATAGCTAAGAAATGAATCGATTTCTTTCATTCATTGTCCTTTTTGTGTGTGAAAATTACTTGTTTGTTTTTTAGATATGGAAATATGCGGCATACTGGGGATTGGATATTAGGATCTTGATGGGATATGATTCAATTGCCTTCAATGCTTTTGGTTGAGAAGGTATGCTGTTTTTTAGATGGGCAGCTTTCAAAACCTTCTGGTACCTCTGTTCTAATGCTTTTAGCAATGCAATGTCCATGGGTGCTAGATTGGGATCAAAGGAGATCATGGATTGCAATAATAGAGCTGGATATCTTGAACTAAGTGCTATTTGGACTTGGGAAGTCATCATCACTTTCATTTACATTTTCTGCTGCAAGATTTGCCAAGCTATAGGACGCACTATCTGGATTCATTGTGGACTTTTTGAGGCACAGTAG

mRNA sequence

ATGAGTAGCCGTGCCAGCAGAACTGTCTATGTCGGAAATCTTCCGGGTGATATTCGTGAAAAAGAAGTGGAAGATTTATTTTACAAGTATGGTCGCATAGCCCACATTGATCTTAAGGTTCCACCAAGACCACCTGGTTATGCATTTGTTGAGTTTGAAGATGCCGAAGATGCTCAAGATGCGATTCGTGGTCGCGATGGCTATGATTTTGATGGCCATAGATTGCGCGTGGAACTTGCTCATGGTGGTCGTGGTCATTCATCATCTAATGATCGCTATAGTAGTCATGGAGGGAGCCGAGGTGGGCGTGGAGTATCTCGGCGCTCTGATTATCGTGTATTAGTCACAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGATCACATGCGGCGAGCTGGGGACGTTTGTTTCTCCCAAGTGTTTCGTGATGGTAGTGGGACCACAGGGATTGTGGATTACACCAACTATGATGACATGAAGTATGCTATTAAGAAACTTGATGACTCTGAGTTCCGCAATGCATTTTCCCGGGCATATGTTCGTGTAAGAGAATATGATTCAAAGAGGGATCTCTCCAGGAGTCCTAGTCGTGGGCGGTCATACTCTAGAGGGAGGAGTTACAGTCGCAGCCGTAGTAGAGGCCGTAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGTCTCCAAAAGCTAAATCTTCCCAGCGGTCCCCTGTTAAATCTCGATCAAGGTCTGCTTCCCCCCCACGCTCACGATCAAAGTCATCATCTCTCTCAGGATGGGCAGCTTTCAAAACCTTCTGGTACCTCTGTTCTAATGCTTTTAGCAATGCAATGTCCATGGGTGCTAGATTGGGATCAAAGGAGATCATGGATTGCAATAATAGAGCTGGATATCTTGAACTAAGTGCTATTTGGACTTGGGAAGTCATCATCACTTTCATTTACATTTTCTGCTGCAAGATTTGCCAAGCTATAGGACGCACTATCTGGATTCATTGTGGACTTTTTGAGGCACAGTAG

Coding sequence (CDS)

ATGAGTAGCCGTGCCAGCAGAACTGTCTATGTCGGAAATCTTCCGGGTGATATTCGTGAAAAAGAAGTGGAAGATTTATTTTACAAGTATGGTCGCATAGCCCACATTGATCTTAAGGTTCCACCAAGACCACCTGGTTATGCATTTGTTGAGTTTGAAGATGCCGAAGATGCTCAAGATGCGATTCGTGGTCGCGATGGCTATGATTTTGATGGCCATAGATTGCGCGTGGAACTTGCTCATGGTGGTCGTGGTCATTCATCATCTAATGATCGCTATAGTAGTCATGGAGGGAGCCGAGGTGGGCGTGGAGTATCTCGGCGCTCTGATTATCGTGTATTAGTCACAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGATCACATGCGGCGAGCTGGGGACGTTTGTTTCTCCCAAGTGTTTCGTGATGGTAGTGGGACCACAGGGATTGTGGATTACACCAACTATGATGACATGAAGTATGCTATTAAGAAACTTGATGACTCTGAGTTCCGCAATGCATTTTCCCGGGCATATGTTCGTGTAAGAGAATATGATTCAAAGAGGGATCTCTCCAGGAGTCCTAGTCGTGGGCGGTCATACTCTAGAGGGAGGAGTTACAGTCGCAGCCGTAGTAGAGGCCGTAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGTCTCCAAAAGCTAAATCTTCCCAGCGGTCCCCTGTTAAATCTCGATCAAGGTCTGCTTCCCCCCCACGCTCACGATCAAAGTCATCATCTCTCTCAGGATGGGCAGCTTTCAAAACCTTCTGGTACCTCTGTTCTAATGCTTTTAGCAATGCAATGTCCATGGGTGCTAGATTGGGATCAAAGGAGATCATGGATTGCAATAATAGAGCTGGATATCTTGAACTAAGTGCTATTTGGACTTGGGAAGTCATCATCACTTTCATTTACATTTTCTGCTGCAAGATTTGCCAAGCTATAGGACGCACTATCTGGATTCATTGTGGACTTTTTGAGGCACAGTAG

Protein sequence

MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVKSRSRSASPPRSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYLELSAIWTWEVIITFIYIFCCKICQAIGRTIWIHCGLFEAQ
Homology
[Close]
BLAST of HG10022959 vs. NCBI nr
Match: KAA0067995.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa] >TYK18132.1 serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 572.8 bits (1475), Expect = 2.0e-159
Identity = 299/303 (98.68%), Postives = 301/303 (99.34%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL 300
           SRSRSASP RSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL
Sbjct: 241 SRSRSASPARSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL 300

Query: 301 ELS 304
           EL+
Sbjct: 301 ELN 303

[Close]
BLAST of HG10022959 vs. NCBI nr
Match: KAG7014363.1 (Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 570.1 bits (1468), Expect = 1.3e-158
Identity = 296/309 (95.79%), Postives = 302/309 (97.73%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHG SRGGRGVSRRSD+RVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGSSRGGRGVSRRSDFRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRS 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRD S+SPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPK KSSQRSPVK
Sbjct: 181 YVRVREYDSKRDSSKSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKGKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL 300
           SRSRSASP RSRSKSSSLSGWAA KTFWYL SNAFSNAMSMGAR GSK+IMDCNNRAGYL
Sbjct: 241 SRSRSASPARSRSKSSSLSGWAALKTFWYLYSNAFSNAMSMGARFGSKKIMDCNNRAGYL 300

Query: 301 ELSAIWTWE 310
           ELSAIWTW+
Sbjct: 301 ELSAIWTWK 309

[Close]
BLAST of HG10022959 vs. NCBI nr
Match: XP_004136028.1 (serine/arginine-rich-splicing factor SR34 isoform X1 [Cucumis sativus] >KAE8646341.1 hypothetical protein Csa_015721 [Cucumis sativus])

HSP 1 Score: 486.9 bits (1252), Expect = 1.4e-133
Identity = 258/260 (99.23%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAK SQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKPSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASPPRSRSKSSSLSG
Sbjct: 241 SRSRSASPPRSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. NCBI nr
Match: XP_008451568.1 (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo])

HSP 1 Score: 483.8 bits (1244), Expect = 1.2e-132
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASP RSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. NCBI nr
Match: XP_038898762.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Benincasa hispida])

HSP 1 Score: 483.8 bits (1244), Expect = 1.2e-132
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASP RSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.1e-99
Identity = 202/266 (75.94%), Postives = 225/266 (84.59%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR+SRTVYVGNLPGDIRE+EVEDLF KYG +  IDLKVPPRPPGYAFVEF+DA DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGG---------RGVSRRSDY 120
           AI GRDGYDFDGHRLRVELAHGGR  SS + R S +GG RGG         RG SRRS++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDS 180
           RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT Y+DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRSYS+ RS SR RS  RSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPPRSRSKSSS 258
           KSS+RSP KS SRS   PRS+S+S S
Sbjct: 241 KSSRRSPAKSTSRSPG-PRSKSRSPS 263

[Close]
BLAST of HG10022959 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.6e-95
Identity = 203/279 (72.76%), Postives = 224/279 (80.29%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR+SRT+YVGNLPGDIRE+EVEDLF KYG +  IDLK+PPRPPGYAFVEFEDA DA D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHS-SSNDRYSSHG-GSRGG-------RGVSRRSDY 120
           AI GRDGYDFDGH LRVELAHGGR  S  +   YS  G G RGG       RG SRRS+Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDS 180
           RV+V+GLPSSASWQDLKDHMR+ G+VCFSQVFRDG GTTGIVDYT+Y+DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS+RD SRSPSRGRSYS+ RS  RS SR RSRS+SRS+S+SPKA
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPPRSRSKSSSLS--GWAAFKTFW 269
           KS +RSP KS SRS    RSRSKS SLS  GW   +  W
Sbjct: 241 KSLRRSPAKSTSRSPR-SRSRSKSRSLSPRGWVTVERHW 274

[Close]
BLAST of HG10022959 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.2e-83
Identity = 178/282 (63.12%), Postives = 211/282 (74.82%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MS R SR++YVGNLPGDIRE E+ED+FYKYGRI  I+LKVPPRPP Y FVEFE + DA+D
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDR------YSSHGGSRGGR-----GVSRRS 120
           AI+GRDGY+ DG RLRVELAHGGRG SSS+ R       S +GG  GG      GVSR S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLD 180
           ++RV+V GLPSSASWQDLKDHMR+AGDVCF++V RD  GT G+VDYTNYDDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSP 240
           D+EFRN ++R ++RV++Y+S R  SRSPSR RS SR RS SR R R  SRS+S SRSKSP
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 KAKSSQRSPVKSRSRS------------ASPPRSRSKSSSLS 260
           + K   +SP +S SRS             SPPR+ S+S S S
Sbjct: 241 R-KDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRS 281

[Close]
BLAST of HG10022959 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.7e-81
Identity = 181/260 (69.62%), Postives = 199/260 (76.54%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR +RT+YVGNLPGDIR+ EVEDLFYKYG I  IDLK+PPRPPGYAFVEFED  DA D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AI GRDGYDFDG RLRVE+AHGGR  S S DRYSS       R  SRRSDYRVLVTGLP 
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMR+AGDVCFS+VF D  G +G+VDY+NYDDMKYAI+KLD +EFRNAFS A
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRS-KSRSRSKSPKAKSSQRSPV 240
           Y+RVREY+S R +SRSP   +SY      SRSRSRG S S  S+SRS SP    S RS  
Sbjct: 181 YIRVREYES-RSVSRSPDDSKSYR-----SRSRSRGPSCSYSSKSRSVSPARSISPRSRP 240

Query: 241 KSRSRSASPPRSRSKSSSLS 260
            SRSRS     SRS+S S S
Sbjct: 241 LSRSRSLYSSVSRSQSRSKS 252

[Close]
BLAST of HG10022959 vs. ExPASy Swiss-Prot
Match: Q6NYA0 (Serine/arginine-rich splicing factor 1B OS=Danio rerio OX=7955 GN=srsf1b PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 8.1e-55
Identity = 136/239 (56.90%), Postives = 162/239 (67.78%), Query Frame = 0 

Query: 9   VYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRDGY 68
           +YVGNLP DIR K+VED+FYKYG I  IDLK     P +AFVEFED  DA+DA+ GRDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76

Query: 69  DFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRG-VSRRSDYRVLVTGLPSSASWQDL 128
           D+DG+RLRVE    GRG           G  RG  G  SRRS+YRV+V+GLP S SWQDL
Sbjct: 77  DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 136

Query: 129 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFR-NAFSRAYVRVRE 188
           KDHMR AGDVC++ VFRDG   TG+V++   +DM YA++KLD+++FR +    AY+RV  
Sbjct: 137 KDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV-- 196

Query: 189 YDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVKSRSRS 246
              K D  RSPS GRS SR RS SRSRS  RSRS S  RS+     S + SP  SRSRS
Sbjct: 197 ---KVDGPRSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSRG----SPRYSPRHSRSRS 243

[Close]
BLAST of HG10022959 vs. ExPASy TrEMBL
Match: A0A5D3D2K1 (Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00620 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 9.7e-160
Identity = 299/303 (98.68%), Postives = 301/303 (99.34%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL 300
           SRSRSASP RSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL
Sbjct: 241 SRSRSASPARSRSKSSSLSGWAAFKTFWYLCSNAFSNAMSMGARLGSKEIMDCNNRAGYL 300

Query: 301 ELS 304
           EL+
Sbjct: 301 ELN 303

[Close]
BLAST of HG10022959 vs. ExPASy TrEMBL
Match: A0A1S4DYP1 (serine/arginine-rich-splicing factor SR34-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103492811 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 5.9e-133
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASP RSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. ExPASy TrEMBL
Match: A0A1S4DYM7 (serine/arginine-rich-splicing factor SR34-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492811 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 5.9e-133
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASP RSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. ExPASy TrEMBL
Match: A0A1S3BR66 (serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492811 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 5.9e-133
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKS SRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASP RSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. ExPASy TrEMBL
Match: A0A6J1D3F5 (serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016926 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.3e-132
Identity = 256/260 (98.46%), Postives = 259/260 (99.62%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DRYSSHGGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRS 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS+SRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPPRSRSKSSSLSG 261
           SRSRSASP RSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]
BLAST of HG10022959 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 367.5 bits (942), Expect = 1.2e-101
Identity = 207/285 (72.63%), Postives = 232/285 (81.40%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR+SRTVYVGNLPGDIRE+EVEDLF KYG +  IDLKVPPRPPGYAFVEF+DA DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGG---------RGVSRRSDY 120
           AI GRDGYDFDGHRLRVELAHGGR  SS + R S +GG RGG         RG SRRS++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDS 180
           RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT Y+DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRSYS+ RS SR RS  RSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPPRSRSKSSSLSGWAAFKTFWYLCSNAFS 277
           KSS+RSP KS SRS   PRS+S+S S   W   +T  +L  N  S
Sbjct: 241 KSSRRSPAKSTSRSPG-PRSKSRSPSPRRWITVETLDHLDHNIIS 282

[Close]
BLAST of HG10022959 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 362.8 bits (930), Expect = 2.9e-100
Identity = 202/266 (75.94%), Postives = 225/266 (84.59%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR+SRTVYVGNLPGDIRE+EVEDLF KYG +  IDLKVPPRPPGYAFVEF+DA DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGG---------RGVSRRSDY 120
           AI GRDGYDFDGHRLRVELAHGGR  SS + R S +GG RGG         RG SRRS++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDS 180
           RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT Y+DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRSYS+ RS SR RS  RSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPPRSRSKSSS 258
           KSS+RSP KS SRS   PRS+S+S S
Sbjct: 241 KSSRRSPAKSTSRSPG-PRSKSRSPS 263

[Close]
BLAST of HG10022959 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 362.8 bits (930), Expect = 2.9e-100
Identity = 202/266 (75.94%), Postives = 225/266 (84.59%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR+SRTVYVGNLPGDIRE+EVEDLF KYG +  IDLKVPPRPPGYAFVEF+DA DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGG---------RGVSRRSDY 120
           AI GRDGYDFDGHRLRVELAHGGR  SS + R S +GG RGG         RG SRRS++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDS 180
           RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT Y+DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRSYS+ RS SR RS  RSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPPRSRSKSSS 258
           KSS+RSP KS SRS   PRS+S+S S
Sbjct: 241 KSSRRSPAKSTSRSPG-PRSKSRSPS 263

[Close]
BLAST of HG10022959 vs. TAIR 10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 350.9 bits (899), Expect = 1.1e-96
Identity = 203/279 (72.76%), Postives = 224/279 (80.29%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MSSR+SRT+YVGNLPGDIRE+EVEDLF KYG +  IDLK+PPRPPGYAFVEFEDA DA D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHS-SSNDRYSSHG-GSRGG-------RGVSRRSDY 120
           AI GRDGYDFDGH LRVELAHGGR  S  +   YS  G G RGG       RG SRRS+Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDS 180
           RV+V+GLPSSASWQDLKDHMR+ G+VCFSQVFRDG GTTGIVDYT+Y+DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS+RD SRSPSRGRSYS+ RS  RS SR RSRS+SRS+S+SPKA
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPPRSRSKSSSLS--GWAAFKTFW 269
           KS +RSP KS SRS    RSRSKS SLS  GW   +  W
Sbjct: 241 KSLRRSPAKSTSRSPR-SRSRSKSRSLSPRGWVTVERHW 274

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BLAST of HG10022959 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 310.1 bits (793), Expect = 2.2e-84
Identity = 178/282 (63.12%), Postives = 211/282 (74.82%), Query Frame = 0 

Query: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
           MS R SR++YVGNLPGDIRE E+ED+FYKYGRI  I+LKVPPRPP Y FVEFE + DA+D
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDR------YSSHGGSRGGR-----GVSRRS 120
           AI+GRDGY+ DG RLRVELAHGGRG SSS+ R       S +GG  GG      GVSR S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLD 180
           ++RV+V GLPSSASWQDLKDHMR+AGDVCF++V RD  GT G+VDYTNYDDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSP 240
           D+EFRN ++R ++RV++Y+S R  SRSPSR RS SR RS SR R R  SRS+S SRSKSP
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 KAKSSQRSPVKSRSRS------------ASPPRSRSKSSSLS 260
           + K   +SP +S SRS             SPPR+ S+S S S
Sbjct: 241 R-KDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRS 281

The following BLAST results are available for this feature:
BLAST of HG10022959 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067995.12.0e-15998.68serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. mak... [more]
KAG7014363.11.3e-15895.79Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp... [more]
XP_004136028.11.4e-13399.23serine/arginine-rich-splicing factor SR34 isoform X1 [Cucumis sativus] >KAE86463... [more]
XP_008451568.11.2e-13298.85PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis me... [more]
XP_038898762.11.2e-13298.85serine/arginine-rich-splicing factor SR34-like isoform X1 [Benincasa hispida][more]
BLAST of HG10022959 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O223154.1e-9975.94Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
F4JHI71.6e-9572.76Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
A2RVS63.2e-8363.12Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q9XFR51.7e-8169.62Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
Q6NYA08.1e-5556.90Serine/arginine-rich splicing factor 1B OS=Danio rerio OX=7955 GN=srsf1b PE=2 SV... [more]
BLAST of HG10022959 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D2K19.7e-16098.68Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. m... [more]
A0A1S4DYP15.9e-13398.85serine/arginine-rich-splicing factor SR34-like isoform X4 OS=Cucumis melo OX=365... [more]
A0A1S4DYM75.9e-13398.85serine/arginine-rich-splicing factor SR34-like isoform X3 OS=Cucumis melo OX=365... [more]
A0A1S3BR665.9e-13398.85serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo OX=365... [more]
A0A6J1D3F51.3e-13298.46serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Momordica charantia... [more]
BLAST of HG10022959 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02840.21.2e-10172.63RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G02840.12.9e-10075.94RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G02840.32.9e-10075.94RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G02430.21.1e-9672.76RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G49430.12.2e-8463.12SER/ARG-rich protein 34A [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 112..183
e-value: 9.1E-7
score: 38.5
coord: 8..78
e-value: 2.3E-23
score: 93.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 113..175
e-value: 2.2E-10
score: 40.2
coord: 9..76
e-value: 4.2E-18
score: 64.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..82
score: 18.80261
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 111..189
score: 9.643862
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..110
e-value: 3.3E-28
score: 100.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 111..188
e-value: 1.3E-22
score: 81.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..256
NoneNo IPR availablePANTHERPTHR23147:SF198PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEINcoord: 2..259
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 2..259
NoneNo IPR availableCDDcd12602RRM2_SF2_plant_likecoord: 111..186
e-value: 1.95595E-50
score: 160.75
NoneNo IPR availableCDDcd12599RRM1_SF2_plant_likecoord: 8..79
e-value: 3.84163E-49
score: 157.236
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022959.1HG10022959.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding