HG10022917 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022917
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein no-on-transient A-like
LocationChr05: 29575949 .. 29576329 (-)
RNA-Seq ExpressionHG10022917
SyntenyHG10022917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCATCAAATCCCTAATTTTCATACCTCTTCTCGCCCTTCTCTTCTTCTCCGAATACCTAGCCACTTCTGCCGCCGTTCGCGACGGCGCTTCCAATTCTCTTACCGGAATGCTCCGCCGGAACATCCTTCAGACGCCGGCTCATCAAATTGCAGATAACAATGTCGAGTCCTCTTCCGAACGGAAGATGAACGTTCATATCAAAAAAGGTGCAGGAGGCGGCGGCCGTTCATCGTCGACGCGTACATCGCCGACGCGGACGCGACCTGTATGGATTGGCAATCGCTCTGGCGGCCGTACATCGTCGGCGAATCGGAGCCGAGTCGCGTCCTTTGGCGTTGGATTTCTGCTCATTTTTTTGGGACTGTTCATGTGA

mRNA sequence

ATGGCTGCCATCAAATCCCTAATTTTCATACCTCTTCTCGCCCTTCTCTTCTTCTCCGAATACCTAGCCACTTCTGCCGCCGTTCGCGACGGCGCTTCCAATTCTCTTACCGGAATGCTCCGCCGGAACATCCTTCAGACGCCGGCTCATCAAATTGCAGATAACAATGTCGAGTCCTCTTCCGAACGGAAGATGAACGTTCATATCAAAAAAGGTGCAGGAGGCGGCGGCCGTTCATCGTCGACGCGTACATCGCCGACGCGGACGCGACCTGTATGGATTGGCAATCGCTCTGGCGGCCGTACATCGTCGGCGAATCGGAGCCGAGTCGCGTCCTTTGGCGTTGGATTTCTGCTCATTTTTTTGGGACTGTTCATGTGA

Coding sequence (CDS)

ATGGCTGCCATCAAATCCCTAATTTTCATACCTCTTCTCGCCCTTCTCTTCTTCTCCGAATACCTAGCCACTTCTGCCGCCGTTCGCGACGGCGCTTCCAATTCTCTTACCGGAATGCTCCGCCGGAACATCCTTCAGACGCCGGCTCATCAAATTGCAGATAACAATGTCGAGTCCTCTTCCGAACGGAAGATGAACGTTCATATCAAAAAAGGTGCAGGAGGCGGCGGCCGTTCATCGTCGACGCGTACATCGCCGACGCGGACGCGACCTGTATGGATTGGCAATCGCTCTGGCGGCCGTACATCGTCGGCGAATCGGAGCCGAGTCGCGTCCTTTGGCGTTGGATTTCTGCTCATTTTTTTGGGACTGTTCATGTGA

Protein sequence

MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESSSERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRTSSANRSRVASFGVGFLLIFLGLFM
Homology
BLAST of HG10022917 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 76/126 (60.32%), Postives = 87/126 (69.05%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESS 60
           MAA+KSL+ + LLALL FSE L  SA  R G SNSLTGMLRRN+LQT AHQIADN+VESS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  SERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRTSSANRSRVASFGVGFLLI 120
            ERKMNVHIK+                R RPV  G RS    S+ANRSR+AS GVG +L+
Sbjct: 61  PERKMNVHIKR----------------RMRPVATGTRS----SAANRSRIASIGVGSVLV 106

Query: 121 FLGLFM 127
            LGLF+
Sbjct: 121 VLGLFL 106

BLAST of HG10022917 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESS 60
           MAAIKSL+FI LLALLFFSE L+TSAA   GASNS+TGMLRRN+LQT  H+IAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 61  SERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNR-SGGRTSSANRSRVASFGVGFLL 120
           SE KMNVHIK+G GG            R RPV  G   +G R S+A+RS+VASFG+GFLL
Sbjct: 61  SEGKMNVHIKRGGGG------------RIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 109

Query: 121 IFLGLFM 127
            F  LF+
Sbjct: 121 FFSRLFL 109

BLAST of HG10022917 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.2e-22
Identity = 76/126 (60.32%), Postives = 85/126 (67.46%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESS 60
           MAAIKSLI I LLALLFFSE L+TSAA   GASNS+T MLRRNILQT  H+IAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 61  SERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRTSSANRSRVASFGVGFLLI 120
           SE KMNV IKKG  G            R RP+  G  +G R+S+ANRSRV SFG+GFLL 
Sbjct: 61  SEGKMNVRIKKGGLG------------RFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLF 108

Query: 121 FLGLFM 127
           F GL +
Sbjct: 121 FFGLVL 108

BLAST of HG10022917 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 79/142 (55.63%), Postives = 87/142 (61.27%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYL-ATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVES 60
           MAAIK+ IFI LLALLFF EYL      VR   SNS+TG+L R ILQT AH+ A +NVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERKM-NVHIK----------KGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRT----SS 120
           SSERKM NVH+K          +G GGGG          R R     N  GG T    S+
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

Query: 121 ANRSRVASFGVGFLLIFLGLFM 127
           ANRS VASFGVGFLL  LGLFM
Sbjct: 121 ANRSLVASFGVGFLLFILGLFM 142

BLAST of HG10022917 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 65/131 (49.62%), Postives = 78/131 (59.54%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPA--HQIADNNVE 60
           MAAIK+L+ I L+ALL F E L TSAAV  GAS SL G+LRRNI+QT A  HQ+A     
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVA----- 60

Query: 61  SSSERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRTSSANRSRVASFGVGFL 120
              E+K NVHIK+                R RPV IG     +TS+ANRSR A  GVG +
Sbjct: 61  ---EKKFNVHIKR--------------RMRMRPVLIGR---PKTSAANRSREAFCGVGSM 106

Query: 121 L---IFLGLFM 127
           L   + LGLF+
Sbjct: 121 LCIFVLLGLFL 106

BLAST of HG10022917 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESS 60
           MAAIKSL+FI LLALLFFSE L+TSAA   GASNS+TGMLRRN+LQT  H+IAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 61  SERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNR-SGGRTSSANRSRVASFGVGFLL 120
           SE KMNVHIK+G GG            R RPV  G   +G R S+A+RS+VASFG+GFLL
Sbjct: 61  SEGKMNVHIKRGGGG------------RIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 109

Query: 121 IFLGLFM 127
            F  LF+
Sbjct: 121 FFSRLFL 109

BLAST of HG10022917 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 76/126 (60.32%), Postives = 85/126 (67.46%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESS 60
           MAAIKSLI I LLALLFFSE L+TSAA   GASNS+T MLRRNILQT  H+IAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 61  SERKMNVHIKKGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRTSSANRSRVASFGVGFLLI 120
           SE KMNV IKKG  G            R RP+  G  +G R+S+ANRSRV SFG+GFLL 
Sbjct: 61  SEGKMNVRIKKGGLG------------RFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLF 108

Query: 121 FLGLFM 127
           F GL +
Sbjct: 121 FFGLVL 108

BLAST of HG10022917 vs. ExPASy TrEMBL
Match: A0A1S3BRF6 (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.6e-20
Identity = 79/142 (55.63%), Postives = 87/142 (61.27%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYL-ATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVES 60
           MAAIK+ IFI LLALLFF EYL      VR   SNS+TG+L R ILQT AH+ A +NVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERKM-NVHIK----------KGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRT----SS 120
           SSERKM NVH+K          +G GGGG          R R     N  GG T    S+
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

Query: 121 ANRSRVASFGVGFLLIFLGLFM 127
           ANRS VASFGVGFLL  LGLFM
Sbjct: 121 ANRSLVASFGVGFLLFILGLFM 142

BLAST of HG10022917 vs. ExPASy TrEMBL
Match: A0A5A7VN87 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00030 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.2e-11
Identity = 48/72 (66.67%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1  MAAIKSLIFIPLLALLFFSEYL-ATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVES 60
          MAAIK+ IFI LLALLFF EYL      VR   SNS+TG+L R ILQT AH+ A +NVES
Sbjct: 1  MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61 SSERKM-NVHIK 71
          SSERKM NVH+K
Sbjct: 61 SSERKMNNVHMK 72

BLAST of HG10022917 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.1e-11
Identity = 63/131 (48.09%), Postives = 76/131 (58.02%), Query Frame = 0

Query: 1   MAAIKSLIFIPLLALLFFSEYLATSAAVRDGASNSLTGMLRRNILQTPAHQIADNNVESS 60
           MAAI+ L+ I LLALLFFSE L T        S+SLTG+  RNIL T AH+I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKMN-VHIKKGAGGGGRSSSTRTSPTRTRPVWIGNRSGGRTSSA-NRSRVASFGVGFL 120
            +RK N +H K                 R RP+ I   +G    SA NRSRVASF VG +
Sbjct: 61  YQRKSNKLHTK--------------DRRRIRPILISGSNGMHHKSAENRSRVASFEVGSM 109

Query: 121 L---IFLGLFM 127
           L   IFLGLF+
Sbjct: 121 LCICIFLGLFL 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575859.11.5e-2460.32hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0068047.13.8e-2360.63protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... [more]
KGN44886.14.2e-2260.32hypothetical protein Csa_015765 [Cucumis sativus][more]
XP_008451666.11.1e-1955.63PREDICTED: protein no-on-transient A-like [Cucumis melo][more]
KAG6593163.11.4e-1249.62hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VLE51.8e-2360.63Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0KAQ72.0e-2260.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1[more]
A0A1S3BRF65.6e-2055.63protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1[more]
A0A5A7VN876.2e-1166.67Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3D3Y68.1e-1148.09E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022917.1HG10022917.1mRNA