HG10022901 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022901
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
LocationChr05: 29446542 .. 29447784 (-)
RNA-Seq ExpressionHG10022901
SyntenyHG10022901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCGAGTGTATGTTAAGGTTGGAGTTAAAAATCAAAATAATGAAGGTGGTTAGATCATATAAAGTTTGCTTATTTGCTTAATGCAGATTATTGAAGTTGTGATATCATCCATTAAGCTATTGACTCTTCTGTAAAAGGTGCAATAACTATCTCACTACAGTCTCTTCATTTATCACATCGTAAAAAGTAACAATAATTCAACTTTTTAAAAAAAGTCAAATTTTCATATCACATGGCAATTTTTAGTTGGACAACTAATGAGTTACGCAAAGATAAGTGTAGTCCAAACAACACCTAAGTATTAATATATATATATATATATATATATATATATAACTATCGAAGGTTTATATATTTTGTATGACAAAATAGTTACAAGTATAAAAGTAAGGAGACTAAAATTATTATATAATAAAGGCGTAACTAGCTAGTTATAATGTTTGTATTGTTATCCATTTTTATGAATATTAAGAAAAAAATAGAGATCCAAAAAAATGAAATAAATAATTAGAGCCAATGATAAGAAAACAAACACAAATTTTTAAAATCAATAACTAAGGGCTTAGTAAATTGACTATTGTTGAATTATTATTTTTTTACTATGTGATAAATAAAGGGATTGTAGGGAGATAGGTATATATATTACTATTCAGTTATAAAAGTCTATGAGATTGGTTATGGCTCCAACGGTGATCTGCTAAACTTTAGCATGCAAGTGTAAATTAAAGTTTCCTCCCATAATATGTGTGTACTGTTTCTTGATCAACACTACTCCAAACTCCCCCGTCTAACTAACTTAAATCGAACGTTGATGTTTATTTTCATTTTGAAGATAATTATGCTGATGTGAGTATTGTGGTCAGAGATGTCGAGGGTGAAGTTATGATGGCGACGACAAAATTTCTGCATCACGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAGAATCAGACTCTTCTTGTGTGTTTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTGTTCAAATTCCAGTTTTGTCGTTTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAACTCTTTTGGATGTTGTTTAG

mRNA sequence

ATGATCCGAGTGTATGTTAAGGTTGGAGTTAAAAATCAAAATAATGAAGGTGATAATTATGCTGATGTGAGTATTGTGGTCAGAGATGTCGAGGGTGAAGTTATGATGGCGACGACAAAATTTCTGCATCACGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAGAATCAGACTCTTCTTGTGTGTTTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTGTTCAAATTCCAGTTTTGTCGTTTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAACTCTTTTGGATGTTGTTTAG

Coding sequence (CDS)

ATGATCCGAGTGTATGTTAAGGTTGGAGTTAAAAATCAAAATAATGAAGGTGATAATTATGCTGATGTGAGTATTGTGGTCAGAGATGTCGAGGGTGAAGTTATGATGGCGACGACAAAATTTCTGCATCACGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAGAATCAGACTCTTCTTGTGTGTTTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTGTTCAAATTCCAGTTTTGTCGTTTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAACTCTTTTGGATGTTGTTTAG

Protein sequence

MIRVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV
Homology
BLAST of HG10022901 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 9.0e-11
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 3   RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHL 62
           R+Y K+         D +A + I++R+  G+VM + TK+L ++ S  M E +  VE   L
Sbjct: 40  RIY-KINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQL 99

Query: 63  AIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE 122
           A  +G  P++LE+DSS +F  F    E +SE G  +   K      +   F F + +GN+
Sbjct: 100 ASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNK 159

Query: 123 MAHGLAQLTFANRCDEAWSEPYPITL 149
            AH LA+     R    W E +P+ L
Sbjct: 160 AAHMLARRALLLREFSIWMEDWPLEL 184

BLAST of HG10022901 vs. NCBI nr
Match: TXG48983.1 (hypothetical protein EZV62_024858 [Acer yangbiense])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 18  DNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDS 77
           +NY  +++V+R+ +G+VM++  K      S  + E LAVVE   LA + GFFP VLESD+
Sbjct: 14  ENYVGIAVVIRNFQGKVMLSFCKNFQACYSPQIAEALAVVEGLRLAKNGGFFPAVLESDA 73

Query: 78  SCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCD 137
             V       +   SE+G+ L D+     +   F F +      ++AHGLA+L  ++  +
Sbjct: 74  LMVVRDICNKVSLSSEVGLVLDDILHFCRESNFFSFSYVPRLAIKVAHGLAKLALSHLGE 133

Query: 138 EAWSEPYPITLLDVV 153
             W    P+ + ++V
Sbjct: 134 FVWFGDCPLCVENLV 148

BLAST of HG10022901 vs. NCBI nr
Match: TXG47194.1 (hypothetical protein EZV62_026488 [Acer yangbiense])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 46/146 (31.51%), Postives = 73/146 (50.00%), Query Frame = 0

Query: 7   KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDL 66
           K+      N   N A + +V+R+  G+VM+++ K      S  + E LAV+E   LA   
Sbjct: 90  KINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKLG 149

Query: 67  GFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHG 126
           GFFP VLESD+  V           S++G+ + D+     D   F F+      N++AHG
Sbjct: 150 GFFPTVLESDALTVVQDICRNESLSSDVGLVIDDILFFCRDFNFFSFRHVPRLANKVAHG 209

Query: 127 LAQLTFANRCDEAWSEPYPITLLDVV 153
           LA+L  +N  +  WS   P+ + ++V
Sbjct: 210 LAKLALSNLGEFVWSGDCPLCVENLV 235

BLAST of HG10022901 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-07
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 25  IVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSF 84
           I++RD  G+V+ + TK+L HV S    E LA VE   +A++ G  P++LE+DS  ++  F
Sbjct: 118 IIIRDHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLF 177

Query: 85  LYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHGLAQ 130
               E +S+ G  ++ +K  +   +   + F +  GN +AH LA+
Sbjct: 178 ARDKEGLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLAR 222

BLAST of HG10022901 vs. NCBI nr
Match: XP_024957833.1 (uncharacterized protein LOC112499264 [Citrus sinensis])

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-07
Identity = 41/146 (28.08%), Postives = 68/146 (46.58%), Query Frame = 0

Query: 7   KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDL 66
           KV V    N+G     + +V+RD  G V+    K +   G  + IE  A+     +A D 
Sbjct: 168 KVNVNAAINKGTRQGGLGVVIRDQNGRVLATAVKKIKFNGDVAQIEAAAINLGIQVAKDA 227

Query: 67  GFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHG 126
           G+ PL +ESDS  V    L      +E+   ++D++ KI    +   Q    + N MAH 
Sbjct: 228 GWTPLTVESDSKEVIDLVLRKKGSRTEIVWCIEDIQNKIEGESMIVIQHIPRECNAMAHA 287

Query: 127 LAQLTFANRCDEAWSEPYPITLLDVV 153
           +A++  A   D  W E +P  +++ +
Sbjct: 288 IAKIALACSDDCVWRESFPPQIMNAI 313

BLAST of HG10022901 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-11
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 3   RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHL 62
           R+Y K+         D +A + I++R+  G+VM + TK+L ++ S  M E +  VE   L
Sbjct: 40  RIY-KINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQL 99

Query: 63  AIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE 122
           A  +G  P++LE+DSS +F  F    E +SE G  +   K      +   F F + +GN+
Sbjct: 100 ASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNK 159

Query: 123 MAHGLAQLTFANRCDEAWSEPYPITL 149
            AH LA+     R    W E +P+ L
Sbjct: 160 AAHMLARRALLLREFSIWMEDWPLEL 184

BLAST of HG10022901 vs. ExPASy TrEMBL
Match: A0A5C7GW84 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024858 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-10
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 18  DNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDS 77
           +NY  +++V+R+ +G+VM++  K      S  + E LAVVE   LA + GFFP VLESD+
Sbjct: 14  ENYVGIAVVIRNFQGKVMLSFCKNFQACYSPQIAEALAVVEGLRLAKNGGFFPAVLESDA 73

Query: 78  SCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHGLAQLTFANRCD 137
             V       +   SE+G+ L D+     +   F F +      ++AHGLA+L  ++  +
Sbjct: 74  LMVVRDICNKVSLSSEVGLVLDDILHFCRESNFFSFSYVPRLAIKVAHGLAKLALSHLGE 133

Query: 138 EAWSEPYPITLLDVV 153
             W    P+ + ++V
Sbjct: 134 FVWFGDCPLCVENLV 148

BLAST of HG10022901 vs. ExPASy TrEMBL
Match: A0A5C7GQX3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.1e-09
Identity = 46/146 (31.51%), Postives = 73/146 (50.00%), Query Frame = 0

Query: 7   KVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDL 66
           K+      N   N A + +V+R+  G+VM+++ K      S  + E LAV+E   LA   
Sbjct: 90  KINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKLG 149

Query: 67  GFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHG 126
           GFFP VLESD+  V           S++G+ + D+     D   F F+      N++AHG
Sbjct: 150 GFFPTVLESDALTVVQDICRNESLSSDVGLVIDDILFFCRDFNFFSFRHVPRLANKVAHG 209

Query: 127 LAQLTFANRCDEAWSEPYPITLLDVV 153
           LA+L  +N  +  WS   P+ + ++V
Sbjct: 210 LAKLALSNLGEFVWSGDCPLCVENLV 235

BLAST of HG10022901 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 25  IVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSF 84
           I++RD  G+V+ + TK+L HV S    E LA VE   +A++ G  P++LE+DS  ++  F
Sbjct: 118 IIIRDHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLF 177

Query: 85  LYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAHGLAQ 130
               E +S+ G  ++ +K  +   +   + F +  GN +AH LA+
Sbjct: 178 ARDKEGLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLAR 222

BLAST of HG10022901 vs. ExPASy TrEMBL
Match: A0A6J5XRI2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS42313 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 49/152 (32.24%), Postives = 72/152 (47.37%), Query Frame = 0

Query: 3   RVYVKVGVKNQNNEGDNYADVSIVVRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHL 62
           R+Y K+ V      GD+   V +VVR+  GE M A  + L         E +A +E    
Sbjct: 38  RIY-KINVDGALKTGDSVRGVGVVVRNENGEFMAACGRRLQGSYEARQTEFMAAIEGLCF 97

Query: 63  AIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE 122
           AID+GF   +LE D+     S L   E     G+ ++++K  + +      Q+    GN+
Sbjct: 98  AIDMGFTDAILEMDTQVCIQSILSTEECNGVDGLMIEEVKSLLNNFRAVGCQWTPRCGNK 157

Query: 123 MAHGLAQLTFANRCDE--AWSEPYPITLLDVV 153
           +AH LAQ  F   C+E   W E  PI LL V+
Sbjct: 158 VAHALAQ--FIIHCNEFVTWIEDVPIWLLPVL 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022140628.19.0e-1132.19uncharacterized protein LOC111011237 [Momordica charantia][more]
TXG48983.11.0e-0931.85hypothetical protein EZV62_024858 [Acer yangbiense][more]
TXG47194.11.9e-0831.51hypothetical protein EZV62_026488 [Acer yangbiense][more]
XP_022139684.14.6e-0733.33uncharacterized protein LOC111010533 [Momordica charantia][more]
XP_024957833.16.0e-0728.08uncharacterized protein LOC112499264 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CIF14.4e-1132.19uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5C7GW844.8e-1031.85RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024858 ... [more]
A0A5C7GQX39.1e-0931.51RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 ... [more]
A0A6J1CDQ42.2e-0733.33uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J5XRI26.5e-0732.24RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..132
e-value: 1.4E-5
score: 27.1
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 15..130
e-value: 1.3E-10
score: 41.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022901.1HG10022901.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity