HG10022899 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022899
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionU1 small nuclear ribonucleoprotein C
LocationChr05: 29429781 .. 29432729 (+)
RNA-Seq ExpressionHG10022899
SyntenyHG10022899
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGCAGGTATTACTGTGACTATTGCGATACATATCTGACCCATGATTCTGTAAGTCCTCTTCTTATATTCAGATGGCAATGCCATGTCCTTTTCGTCTGATTATTGCCCACTTTTTTTTTTCTTTCTTCTTTTTCATTTTGGGGTTTTATTCGTTGATGCTGCAGTTCCTTGCCTTTATGATGGGTAGTGTTTTGCGGTTAATAATTTTCAATTTTGGATGCACATATCAGTTGTTCGAATAGATTGTAGGAAAGGATTCATATGACTTTGGTGCCGTTGGGATTGGATTGAATGATGGATCAAATCGACTGTTTGTTGTTTATATATATATATATATATATTATGATGTTTATGTGTATAAATGTGTTTTAAGAGAAGCTAGAACTTATATTGGTAATTGAAAAGTTATATTGTTAATGATAAGAACGCTTCCCACTAAGGCTTGAATCTAAAGAAACAAGTAATTGTGAAAAGTTTCAGAGAGAACACTCCAATAAGTTGTATAGTTCTTATCATATTGCTTTTCTCCCTCTATTTTTCAAGGCTATGATATATTTTAGACCCAATAACTTGAACCACAGAACCACTATGGATTGACTTAGTGAATTGAGGTCGAGGTCAAGGAAGAAAGTGAGCCTGGAGGCTATTGGTTCAAACTATTGCGACCACCTATTTAGATTTAAAATTCTATGACTTTCCTTAGCATTTTAACGTCGTCGGTTGAGGTGGTTGTGCCTTGATGTTAGTTGAGGTGTGCAAAAGCAAGACTCAAACACTCGATATCCAAAAAAAGAAAAGAAACCCTAAATTATGGCTACTAAGTTAAACTCTTGATTTCAAGTGGAATGTGCCAAACCTCTGGTTTCGTTGCAACTAAGATTGGTTTGTACAAAAATTTGTAATGGCTTGTTTCAATTAAACTTGATTCTTGTGTTCTAGATGCAATAATCTTTGGTTCTTTAGCATTTTCTGTTTTTCTTTTTTTCCCACTTGTGTGTGTTGTTGTTTTGGGGGGGCGTTAAGTATTGATTTGGGGAGCAGGCTTCAATTTTTTGGACATGTTTGTCATTTATATTGAGTTAGTGAATGTTTAATGTTGCTCATATTTATGTATTTTATTTATTAATTGTTATTTTTTTTTGCAGCCATCCGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATATTGGCCACGTCTCAATTTAGTGTATAATTCCCTATTCTGAGGAGGTTGAGCTCTTTGGGGCAGTTTAAAAATTGAATTTAATAGTATTATGTTTTCAATAACATGCCACTTTCAAACTAAAAAGAACTTTGTTGGTTTCTTGGTTATAATTTTAGAAACACATAAAAAGGGGAAAAGTTGAGCCTAGAGGCTAGATTTTATTGTTTTTTAGAGGTTGCTTTCTGTTTACTGAAATACGATCAAGATTATGATTAGTATCTTTAAGTGTATTGTAATTGTAACTTTTGCATTATGTAATCCCTCACGGTAAATGTTGCTCTTTTTGTAATTTCATACCATCAATAAAATTTTGATTGAATGTTTCTCACAAAAAAAAAAAAAAAAATTGTAACTTTCATAAAGACAAAATTTAACAAACCGTGGAAGTATTAAAAATATCTTTCCATTCATTCATCCAATAAGAACTTTCATTTTTCAAGAAAAGCAGACATTTTAATTTTTAAAGAACAAATGAACAACAAATTCTTAGTTCTTTATTCATGGATGCACTCCAGGCAAATGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATTAAAGAACATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTATAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGTAATTCATAGATTTGATATGTTTCAGATGTAGCAATTTTTTTATGCATATCCCTTTGACTTTGATTGTGTTATTTCTCAATTTGAATTTCAAACTACCAAAACCACCTTGTTATGCTTTTTGACTCGGTAAAAAACTTAAAATAGTCAGAAGTAATAATATACAGGCTTGAATCGTGAATAGATTAGACATAATAAGTGCCAAAGTAGAATTTGGCATCTCTGTCTGGTTAAAATTATTTCTATTGGTACCAAAATGATGTTTAGTCCTTTTTTTCAAAAACAAAAACGGAACTTCGATAGAACGTGACATGGAAGATGATGAGAGCAATGTAGATTTTCCAGGTCACATTCTAATGAAGTTTCATCTTTTGCTTGTTGATAGGAAGGAATAAACATCATTTCAATAAAAGAAATCATTTTAATCAAACATAGCTACTACTATCTCTTGAAGCTGCTTAATTTGATAAACCTCAAAATTTCGATTATTTGGTTTTATTCTTTAGCTTTAGTAAACCAAATCAACCAATTAGTATACTTCAAACCAACCAAACCGACTCATTTCAGTCAGTGACATCGGTTTTTATTGATTTCGATTCATGCTTCTAGTCATTACTGAATGGAATTTAGATGTAACCAATGCATCAAATATTTAGCATATGTATCAAATTGATTGAAATCCCCTCTGTCATTTTAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGGCCCACCCGGAGCTCCTATGCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCGTTGGCTGCACCATCAATGTATCAAGCAAATCCAGCGGCACCAGGAAGCGGAGGGTATGATAGTTTTACCTCCATGGCTCAACCTTCTGAGTCTAACCATTAG

mRNA sequence

ATATGCAGGTATTACTGTGACTATTGCGATACATATCTGACCCATGATTCTCCATCCGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAATGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATTAAAGAACATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTATAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGGCCCACCCGGAGCTCCTATGCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCGTTGGCTGCACCATCAATGTATCAAGCAAATCCAGCGGCACCAGGAAGCGGAGGGTATGATAGTTTTACCTCCATGGCTCAACCTTCTGAGTCTAACCATTAG

Coding sequence (CDS)

ATATGCAGGTATTACTGTGACTATTGCGATACATATCTGACCCATGATTCTCCATCCGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAATGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATTAAAGAACATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTATAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGGCCCACCCGGAGCTCCTATGCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCGTTGGCTGCACCATCAATGTATCAAGCAAATCCAGCGGCACCAGGAAGCGGAGGGTATGATAGTTTTACCTCCATGGCTCAACCTTCTGAGTCTAACCATTAG

Protein sequence

ICRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTMPPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGYDSFTSMAQPSESNH
Homology
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BLAST of HG10022899 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 367.5 bits (942), Expect = 7.3e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAAYNQHLLGQRPRLPVLPTP+MPGAAPGLMPGIRPPVLPRP+PGAPGYLPAPTM
Sbjct: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGAPMPGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PSMYQANPAAPGSGGY
Sbjct: 123 PPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSGGY 182

Query: 183 DSFTSMAQPSESNH 197
           +SFT+MAQPSE NH
Sbjct: 183 ESFTTMAQPSEPNH 196

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BLAST of HG10022899 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 187/195 (95.90%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAA+NQHLLGQRPRLPVLPTP+MPGAAPGLMPGIRPPVLPRPIPGAPGYLP PTM
Sbjct: 63  AFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGAP+PGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPS YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQP-SESNH 197
           DSFTSMAQP SESNH
Sbjct: 183 DSFTSMAQPSSESNH 197

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BLAST of HG10022899 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 187/195 (95.90%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAA+NQHLLGQRPRLPVLPTP++PGAAPGLMPGIRPPVLPRPIPGAPGYLP PTM
Sbjct: 63  AFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGAP+PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPS YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQP-SESNH 197
           DSFTSMAQP SESNH
Sbjct: 183 DSFTSMAQPSSESNH 197

[Close]
BLAST of HG10022899 vs. NCBI nr
Match: KAG6593155.1 (U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 179/193 (92.75%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAAYNQHLLGQRPRLPVLPTP+MPG  PGLMPGIRPPV PRP+PGAPGYLP PTM
Sbjct: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGVPGLMPGIRPPVFPRPVPGAPGYLPNPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGA MPGQVN+PSRPPPPAPIPGS PQPSSTNGAPL AP  YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQPSSTNGAPLTAPQTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQPSESN 196
           DSFT+MAQPSESN
Sbjct: 183 DSFTTMAQPSESN 195

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BLAST of HG10022899 vs. NCBI nr
Match: XP_023515032.1 (U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.7 bits (901), Expect = 4.2e-93
Identity = 180/193 (93.26%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAAYNQHLLGQRPRLPVLPTP+MPG APGLMPGIRPPV PRP+PGAPGYLP PTM
Sbjct: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGA MPGQVNIPSRPPPPAPIPGS  QPSSTNGAPL AP  YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGALMPGQVNIPSRPPPPAPIPGSTQQPSSTNGAPLTAPQTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQPSESN 196
           DSFT+MAQPSESN
Sbjct: 183 DSFTTMAQPSESN 195

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BLAST of HG10022899 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-65
Identity = 149/213 (69.95%), Postives = 162/213 (76.06%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ A
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTA 62

Query: 63  AFQQVGAAYNQHLLG-----QRPRLPVLPTPIMP--GAAP-----GLMPGIRPPVLPRPI 122
           AFQQVGAAYNQHL+       RPRLPVLPTP MP  G+AP      L+PG+RPPVLPRP+
Sbjct: 63  AFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPRPV 122

Query: 123 PGAPGYLPAPTMPPMMGPPGA---PMPGQVNIPSRPP----PPAPIPGSAPQPSSTNGAP 182
           PGAPGY+PAP MP MM PPGA   PMP   ++P RPP    PPA +PGS   P+S     
Sbjct: 123 PGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGAPS 182

Query: 183 LAAPSMYQANPAAPGSGGYDSFTSMAQPSESNH 197
           +    MYQANPA P SGG+DSF   AQ  E+NH
Sbjct: 183 MMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

[Close]
BLAST of HG10022899 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-48
Identity = 135/228 (59.21%), Postives = 149/228 (65.35%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLG-----QRPRLPVLPTPIMPGAAP--GLMPGIRPPVLPRP----IP 122
           AF Q GA +NQH+L       RPRLP+LPTP MP   P   LMPG+RPP+LP P     P
Sbjct: 63  AF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPGYP 122

Query: 123 GAPGYLPAPTMPP-MMGPPGAPMPGQVNIPSRPP-------PPAPIPGSAPQPSS-TNGA 182
           GAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   GA
Sbjct: 123 GAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVPGA 182

Query: 183 PL----AAPSMYQANPAAPG---SGGYDS-------FTSMAQPSESNH 197
           P+    A P++YQANP AP    SG   +         S A PSE NH
Sbjct: 183 PIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

[Close]
BLAST of HG10022899 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.5e-48
Identity = 120/196 (61.22%), Postives = 133/196 (67.86%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ  
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQTG 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMP-GIRPPVLPRPIPGAPGYLPAPT 122
            +QQVGA +NQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P P 
Sbjct: 63  GYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPPPG 122

Query: 123 MPPMMGPPGAPM-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAAPS 182
           +P MM PPGAP+ P   N   RPP  APIPG        AP P    G P     L  P 
Sbjct: 123 VPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPPP 182

Query: 183 MYQANPAAPGSGGYDS 185
            Y  NPAAP SG +++
Sbjct: 183 PYHTNPAAPPSGNFNN 190

[Close]
BLAST of HG10022899 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.4e-48
Identity = 138/231 (59.74%), Postives = 151/231 (65.37%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLG-----QRPRLPVLPTPIMPGA---APG--LMPGIRPPVLPRP-IP 122
           AF Q GA +NQH+L       RPRLP+LPTP MP     APG  LMPG+RPP+LP P IP
Sbjct: 63  AF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPGIP 122

Query: 123 GAPGYLPA---PTMPP-MMGPPGAPMPGQVNIPSRPP-------PPAPIPGSAPQPSS-T 182
           G PG  P    P  PP  M  PGAP PG +  P  PP        P P P + P P+S  
Sbjct: 123 GYPGGPPTMLQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGV 182

Query: 183 NGAPL----AAPSMYQANPAAPG---SGGYDS-------FTSMAQPSESNH 197
            GAP+    A P++YQ NP AP    SG   +         S AQPSE NH
Sbjct: 183 PGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

[Close]
BLAST of HG10022899 vs. ExPASy Swiss-Prot
Match: Q32PA0 (U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-17
Identity = 65/151 (43.05%), Postives = 80/151 (52.98%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           ++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+         A
Sbjct: 3   KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPG-AAPGLMPGIR---PPVLPRPIPGAPGYLP 122
           AFQQ                 + P P +PG   PG+MP      PP++P   P  PG +P
Sbjct: 63  AFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMP 122

Query: 123 APTMPPMMGPPGAPMPGQVNIPSRPPPPAPI 150
               P M  P G  MP     P   PP  P+
Sbjct: 123 VGPAPGMRPPMGGHMPMMPGPPMMRPPARPM 146

[Close]
BLAST of HG10022899 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.1e-97
Identity = 187/195 (95.90%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAA+NQHLLGQRPRLPVLPTP+MPGAAPGLMPGIRPPVLPRPIPGAPGYLP PTM
Sbjct: 63  AFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGAP+PGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPS YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQP-SESNH 197
           DSFTSMAQP SESNH
Sbjct: 183 DSFTSMAQPSSESNH 197

[Close]
BLAST of HG10022899 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.7e-97
Identity = 187/195 (95.90%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAA+NQHLLGQRPRLPVLPTP++PGAAPGLMPGIRPPVLPRPIPGAPGYLP PTM
Sbjct: 63  AFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGAP+PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPS YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQP-SESNH 197
           DSFTSMAQP SESNH
Sbjct: 183 DSFTSMAQPSSESNH 197

[Close]
BLAST of HG10022899 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.7e-97
Identity = 187/195 (95.90%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAA+NQHLLGQRPRLPVLPTP++PGAAPGLMPGIRPPVLPRPIPGAPGYLP PTM
Sbjct: 63  AFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGAP+PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPS YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQP-SESNH 197
           DSFTSMAQP SESNH
Sbjct: 183 DSFTSMAQPSSESNH 197

[Close]
BLAST of HG10022899 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.6e-93
Identity = 179/193 (92.75%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAAYNQHLLGQRPRLPVLPTP+MPG APGLMPGIRPPV PRP+PGAPGYLP PTM
Sbjct: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGA MPGQVN+PSRPPPPAPIPGS  QPSSTNGAPL AP  YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQPSESN 196
           DSFT+MAQPSESN
Sbjct: 183 DSFTTMAQPSESN 195

[Close]
BLAST of HG10022899 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.5e-93
Identity = 179/193 (92.75%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMPGIRPPVLPRPIPGAPGYLPAPTM 122
           AFQQVGAAYNQHLLGQRPRLPVLPTP+MPG APGLMPGIRPPV PRP+PGAPGYLP PTM
Sbjct: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNPTM 122

Query: 123 PPMMGPPGAPMPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGY 182
           PPMM PPGA MPGQVN+PSRPPPPAPIPGS PQ SSTNGAPL AP  YQANPAAPGSGGY
Sbjct: 123 PPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQLSSTNGAPLTAPQTYQANPAAPGSGGY 182

Query: 183 DSFTSMAQPSESN 196
           DSFT+MAQPSESN
Sbjct: 183 DSFTTMAQPSESN 195

[Close]
BLAST of HG10022899 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 192.2 bits (487), Expect = 3.9e-49
Identity = 120/196 (61.22%), Postives = 133/196 (67.86%), Query Frame = 0 

Query: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAA 62
           RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ  
Sbjct: 3   RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQTG 62

Query: 63  AFQQVGAAYNQHLLGQRPRLPVLPTPIMPGAAPGLMP-GIRPPVLPRPIPGAPGYLPAPT 122
            +QQVGA +NQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P P 
Sbjct: 63  GYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPPPG 122

Query: 123 MPPMMGPPGAPM-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAAPS 182
           +P MM PPGAP+ P   N   RPP  APIPG        AP P    G P     L  P 
Sbjct: 123 VPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPPP 182

Query: 183 MYQANPAAPGSGGYDS 185
            Y  NPAAP SG +++
Sbjct: 183 PYHTNPAAPPSGNFNN 190

The following BLAST results are available for this feature:
BLAST of HG10022899 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899936.17.3e-9895.36U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida][more]
XP_004148886.11.1e-9695.90U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ... [more]
XP_008451425.11.8e-9695.90PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ... [more]
KAG6593155.11.4e-9392.75U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_023515032.14.2e-9393.26U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo][more]
BLAST of HG10022899 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F6HQ261.7e-6569.95U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0... [more]
C5XYW41.1e-4859.21U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260... [more]
Q56XE45.5e-4861.22U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312... [more]
C5XZK69.4e-4859.74U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880... [more]
Q32PA05.1e-1743.05U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2[more]
BLAST of HG10022899 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5155.1e-9795.90U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ... [more]
A0A5A7UNW28.7e-9795.90U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS928.7e-9795.90U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=... [more]
A0A6J1KWY52.6e-9392.75U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890... [more]
A0A6J1H7P84.5e-9392.75U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
BLAST of HG10022899 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G03120.13.9e-4961.22C2H2 and C2HC zinc fingers superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 3.7E-10
score: 49.7
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 3..38
e-value: 1.5E-19
score: 69.5
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..195
e-value: 3.2E-38
score: 130.6
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 2..178
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 2..169
score: 11.677276
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 2..61
e-value: 6.1E-28
score: 98.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..196
NoneNo IPR availablePANTHERPTHR31148:SF2U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 2..178
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 12.522273
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 3..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022899.1HG10022899.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000395 mRNA 5'-splice site recognition
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030627 pre-mRNA 5'-splice site binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding