HG10022896 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022896
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein BRN1
Location	Chr05: 29407575 .. 29412207 (-)
RNA-Seq Expression	HG10022896
Synteny	HG10022896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGGGAGTAGAGGAGAGAGAAAGGAGAGTAGTCAGGAGGAAGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTGCCAAAGCATATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTTGCACTTGTAGACGAAGTCAACATCATCAGAGACAAGGCCACTCGCGCCTCTAGAGGTTTTTTTTCTTTTTGATTTCAACTTCAACCAGTTTTGTTTTGTTCTTACTTTGCTTAGTTTACATTTACACTCGCATTCTCTCTGTTTTGGTTATGTCGTGTTTCTCGTTTGAAATTTATGGTTCGATTGATTTTGAGTAGGCTCTAATCGATTGACATTGTGAATTGTTGTGTTGAACCCTAATTTTTTTTTTTTTTTGGTTGTGGTTTGTGCTTGTGTTTGGTTACTGCATTTTCAGGTTGCTGTTTTGTGATCTGTCCTTCGAGGCAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGTTAGTGGAATCTGGATGTTTAGTTGTGAATTATTATAATTTATCTCTCTCTCTCTCTCTCAATGTTTTGTTTTTTATGTCTTTTCCTTTTCTTGTCGATAATTCTAATCAATGCAATTGATCGATGCGATAAACTTGGCCTTGTGCGTAATTGCTGTTATCGATAACCTAGAAGTTCTAAACGTCTTGGATTTTCTGTAAAAGCTGCTTTCTAGTTTCAGACTACAGCACATTCTGATATATCTTATATTTGGAGTCATTTTGGACATAAAAATGAACTAGTGAGCGCTCTACATTTCTTGTGGAAGCAACTTGAGCAGAGCCTCTAAGCATTCACTTCCATTTATTTAAAAAAAAGAAATTTATTCAATCTTTTCATTTTTCTATAATAGTTTTATTTAATTCTGCTTTTCGGAATCAAGCTCTTTAACTCAGAAAGATGATACCCTTATGCTTTAGCATTGAATGCACGGACATGCCTTTGCAATGAATAAAAGGAAAAAGAGAAAACCCTTTTAGAGAGCTCATTTTACATAATTAAAGATAAATATGCACATCAATGGAGTGGGATCAACTTCTGATCCCTAAATTTTGGAGCAATGATTTTCTGATGTTATCATTCTGCTTGTAATTAACATTGTAAAGCTTTTTCTGTTTAATTTGCAATTGACATGGTCCGCCGTTGAGTGATAAATGCGTCTTGAAGAGAAATAATAACGTATTCATTATTAGAGGAAAGAATATGGGTTTCCATCGAATCTATCGATAATATATCACCAATCACCATTTTTTATGGTTAAAGTATGCTGAAATGATTAAAATTTTGGTGAGTTGGTTAGGAAATAATTGTAGAGTTGACTTAATGGCATGTCATGTAAAGTATATTCCTGATTCACGTAAGAGCTTCTTAATGTTGTTTGCCAATTTATTAAATTATGGTGCAATGAAGTAGTGGTAGAGTTGACTCAAATTATTTAATTTAATTTATGTTACTATTCCAAGCATTGATTTGATGAACCGTAGGTATTCTGAAATTTTAAGTGAATGTGAAGACATTCTTTTCTATTTTTGTCTTGCCTTTTCCATTGCACTGAACGAAATTTGACCTTATAATCTGTCCTAACGTTCGTGATTGAATTACATAAGACCAAATCAGTACTCAAACATGCATCGTTAGTATGGTTCATTATAGTCAATGAACCATACTACCTCTGTGCCAAAATAAATGCCTTCTAATTTATGTTTACTCTAACTCTGTAATTAAACATTGTTATTGTCTAATTGAGTAGTAATGCCCTTCATTTTCCGTTCAATCCAGGCTTCTAGTCCGTTGCAAGTAAAATATGCAGATGGCGAGCTGGAAAGACTAGGTGTAATATCATGCCCTGCTTGAATATTTCATCTAAAAGATGGTTCCTAACATCCATCAACCTACATTGCCACTTACTTAATGAACTGTATTTATCTTGCTAAAAAAATTGATTTTTAGTGTGTATGGATAGTAATGGTTGGTTATTTCTGGAAAGAGCAGAACACAAACTCTTCATTGGAATGCTTCCGAAAAATGTGTCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACGATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGTAAAGGTAGTTTTCGGTTTGTTTCAGCTTAATTTTAGTTGAAGTTATGAAAGATATCACACATTCAGTTGAATCTTCACCATTAGCTCCATATGTTGCTCAAGTTCAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGTAATGGAAATTAAATTGTCGAAATGTTCGTGTCTGAGTTAGTTTTCTAGTAATGTTTAGCTTTTCAAATTTAGTTGTTAGGAGGTTCATACCAAGATCATTGAAATCATAGAAAGCTATTATATTACTGAGTATCCACATTCACATTGTTGATATTTTGTGCCTTTGTGGGCACTTCTAATATTTCCCGACATTTTCATGATATCTCAGAAAAAAGATATTGGTCGCTCTTGTTATGTTGAGCCCTTTTATTCGTGGAGTTTTTATGGGAATTTCATTCCATGCACTCCGATCATCTCTGGATGCTATTTATGGATCATGATATTGTATTGCAGTAATATTTTAATAGATCGATAATGTTTCACTCAGTCCAGCTACATCTATGAATGGGAAGAAGACAATTGAGGGTCCTGATGAGGATATTTAAATCTGTATTCAGATCATTGCTTGCCTAAACTTGCATTAAGCATGAATATTCTTGCCATATCTCTTCTTTTCGTTTCCACTATTGCTCATGACTGCATCCATTGGCTTTATTTTTATTTTAATTTTAATGAATTTTGTAATGGATGCATGAAACTGATGGTCATACTAAAACTAGCCAGATGGTGTTGTGGCCTGGACAGAATAGCATTTATTATTATTATTTTTTTAATGAATAAAATTCATTTAGCTATAACTGGTTGGAATTTTTTTGGTAAGAATTTTTTAATTGAAGTCAAATTAGCCAGTCAAATTCATTGCACCCAACAGTTGAGTCTTCTTGCACAAGCCAACATCATTTTAGGGCCAACATATTATGAAAATCCTAGCTTTCCTGTAAGTAGGATAGTCTGTCATATACGCATATCCTTTGCCCCAGTGAAAGTATGGAAGATTATGAATTTATACATACAGACGTAGGTTTAGGGAGGCATCATGCATTTGATTGTTTTTTCCCCCTACTCAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCCGACACAGAGAAGGAAAGGCAAGCTCGGAAAGTTCAGAAAGCTCAATCACAGGCCTCTAATGTGCTTAATGCAGACTCCCAACATCCTTCACTGTTTGGAGCCATGCCACCACTGGGTTATGTTCCACCATATAACGGCTATGGTTATCAGGTCAGTTTTGCAAGGGGATTATTCTTGGGCTTCTTCAATTTGTATGTATGTATGTATGTGCCATGTGCAAGGATCTTTTTTTCTTTTTTATTTATTTCATTGTGGTCTGTGTTGTCATTGTTCTTGTACTTTTGGTTATCATGCACTTCAAAAAATCAGTTTCTTTTGAATGGTAATGAATGTTATCAATCCGATACCTGATCCATGATCTTAATCTCGATTTCCTTTTTAATGGTTTTCATTTTCATGTTTGCAATTGAGCATTTTTATATTGAATCGTGAAGGTAGCCAATGATAGTCTCTACTCTCTTTGTAGGCTCCTGGAAGTTATGGGCTTATGCAATATCATCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAACCAAGGAAGCGCAATGCGAGGGATCCCACCTGACCTTGGCCCGGGTATGGCCACTAGAAATTATGGCATGCCTCCTGCAAGTTACGTTGGCCCTGCCTATCCTGGAGTTCCAGGTCTTCAACATCCCATGGCGTACCCTGGAGGAATGATGAGTCCTGGGGTTGTGAGCAGTTCACCTGGTCCGGGGCCATTTACTAGTGGGAAGAATAACTCTCCAACGTCTAGTTTGGGTAAAGGCTCTGGAGGTCAGATTGAAGGTAGTTAGTTATTTCCCTTTTGTCTGACCTTGATTTACTGATTGGTTTTGAGCTTCTGGGAATTATAGTTCACTATCTTTTTTTTTCTCTAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATTTGGGGATCTGGAGCTTGCTAATTCTTTTCGAGCATTTGGGCGAGTTTTGAGCGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGTGAGCATGTTTTTTCTTGCTATTTTACACCTGCAACTTTGTGCAAAAACTAATGTTGAAGATGAGTGTTTTTAACCATTCTTTTCTGTATTTTGGTACGTGTAGACGTCTAACCGTTGTTGCATCTACAGGGTTCGTTAGTTATGATTCTGCTGAGGCTGCTCAATCTGCCATAAGTATGATGAATGGATGCCAATTAGGTGGAAAGAAATTAAAAGTCCAGCTGAAGAGAGACAACAAACAGAGTAAACCATATTGA

mRNA sequence

ATGGCGGAGGGGAGTAGAGGAGAGAGAAAGGAGAGTAGTCAGGAGGAAGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTGCCAAAGCATATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTTGCACTTGTAGACGAAGTCAACATCATCAGAGACAAGGCCACTCGCGCCTCTAGAGGTTGCTGTTTTGTGATCTGTCCTTCGAGGCAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTAAAATATGCAGATGGCGAGCTGGAAAGACTAGTGTGTATGGATAGTAATGGTTGGTTATTTCTGGAAAGAGCAGAACACAAACTCTTCATTGGAATGCTTCCGAAAAATGTGTCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACGATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGTAAAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCCGACACAGAGAAGGAAAGGCAAGCTCGGAAAGTTCAGAAAGCTCAATCACAGGCCTCTAATGTGCTTAATGCAGACTCCCAACATCCTTCACTGTTTGGAGCCATGCCACCACTGGGTTATGTTCCACCATATAACGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCATCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAACCAAGGAAGCGCAATGCGAGGGATCCCACCTGACCTTGGCCCGGGTATGGCCACTAGAAATTATGGCATGCCTCCTGCAAGTTACGTTGGCCCTGCCTATCCTGGAGTTCCAGGTCTTCAACATCCCATGGCGTACCCTGGAGGAATGATGAGTCCTGGGGTTGTGAGCAGTTCACCTGGTCCGGGGCCATTTACTAGTGGGAAGAATAACTCTCCAACGTCTAGTTTGGGTAAAGGCTCTGGAGGTCAGATTGAAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATTTGGGGATCTGGAGCTTGCTAATTCTTTTCGAGCATTTGGGCGAGTTTTGAGCGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGGTTCGTTAGTTATGATTCTGCTGAGGCTGCTCAATCTGCCATAAGTATGATGAATGGATGCCAATTAGGTGGAAAGAAATTAAAAGTCCAGCTGAAGAGAGACAACAAACAGAGTAAACCATATTGA

Coding sequence (CDS)

ATGGCGGAGGGGAGTAGAGGAGAGAGAAAGGAGAGTAGTCAGGAGGAAGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTGCCAAAGCATATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTTGCACTTGTAGACGAAGTCAACATCATCAGAGACAAGGCCACTCGCGCCTCTAGAGGTTGCTGTTTTGTGATCTGTCCTTCGAGGCAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTAAAATATGCAGATGGCGAGCTGGAAAGACTAGTGTGTATGGATAGTAATGGTTGGTTATTTCTGGAAAGAGCAGAACACAAACTCTTCATTGGAATGCTTCCGAAAAATGTGTCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACGATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGTAAAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCCGACACAGAGAAGGAAAGGCAAGCTCGGAAAGTTCAGAAAGCTCAATCACAGGCCTCTAATGTGCTTAATGCAGACTCCCAACATCCTTCACTGTTTGGAGCCATGCCACCACTGGGTTATGTTCCACCATATAACGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCATCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAACCAAGGAAGCGCAATGCGAGGGATCCCACCTGACCTTGGCCCGGGTATGGCCACTAGAAATTATGGCATGCCTCCTGCAAGTTACGTTGGCCCTGCCTATCCTGGAGTTCCAGGTCTTCAACATCCCATGGCGTACCCTGGAGGAATGATGAGTCCTGGGGTTGTGAGCAGTTCACCTGGTCCGGGGCCATTTACTAGTGGGAAGAATAACTCTCCAACGTCTAGTTTGGGTAAAGGCTCTGGAGGTCAGATTGAAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATTTGGGGATCTGGAGCTTGCTAATTCTTTTCGAGCATTTGGGCGAGTTTTGAGCGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGGTTCGTTAGTTATGATTCTGCTGAGGCTGCTCAATCTGCCATAAGTATGATGAATGGATGCCAATTAGGTGGAAAGAAATTAAAAGTCCAGCTGAAGAGAGACAACAAACAGAGTAAACCATATTGA

Protein sequence

MAEGSRGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATRNYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY

Homology

[Close]

BLAST of HG10022896 vs. NCBI nr
Match: XP_038900154.1 (RNA-binding protein BRN1 [Benincasa hispida])

HSP 1 Score: 831.2 bits (2146), Expect = 4.2e-237
Identity = 426/454 (93.83%), Postives = 430/454 (94.71%), Query Frame = 0


Query: 1   MAEGSRGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAEGSRGERKES+QEEEDSVKLFVGQVPK MTEAQLLAMFQEFALVDEVNIIRDK TRAS
Sbjct: 1   MAEGSRGERKESNQEEEDSVKLFVGQVPKLMTEAQLLAMFQEFALVDEVNIIRDKTTRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERA 120
           RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL              
Sbjct: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL-------------- 120

Query: 121 EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE 180
           EHKLFIGMLPKNVSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE
Sbjct: 121 EHKLFIGMLPKNVSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE 180

Query: 181 AINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGY 240
           AINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQASNVLNADSQHPSLFGAM PLGY
Sbjct: 181 AINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAM-PLGY 240

Query: 241 VPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATRNY 300
           VPPYNGYGYQAPGSYGLMQYHLPPMQNQSG+PNMIPQLNQG+AMRGIPPDLGPGMATRNY
Sbjct: 241 VPPYNGYGYQAPGSYGLMQYHLPPMQNQSGYPNMIPQLNQGNAMRGIPPDLGPGMATRNY 300

Query: 301 GMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSG 360
           GMPPA+YV  AYPGVPGLQHPMAY GGMMSPGVVSSSPGPGPFT GKNNSPTSSLGKGSG
Sbjct: 301 GMPPANYVSSAYPGVPGLQHPMAYAGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSG 360

Query: 361 GQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSA 420
           GQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSA
Sbjct: 361 GQIEGPPGANLFIYHIPQEFGDPELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSA 420

Query: 421 EAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           EAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 EAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 439

[Close]

BLAST of HG10022896 vs. NCBI nr
Match: XP_008451423.1 (PREDICTED: RNA-binding protein BRN1 [Cucumis melo])

HSP 1 Score: 812.0 bits (2096), Expect = 2.6e-231
Identity = 424/456 (92.98%), Postives = 427/456 (93.64%), Query Frame = 0


Query: 1   MAEGSR-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGSR GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLE 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL            
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL------------ 120

Query: 121 RAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180
             EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA
Sbjct: 121 --EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180

Query: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPL 240
           LEAINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQA+NVLNADSQHPSLFGAM PL
Sbjct: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAM-PL 240

Query: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATR 300
           GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG+AMRGIPPDLGPGMATR
Sbjct: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATR 300

Query: 301 NYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKG 360
           NY MPPASY   AYPGVP LQHPMAYPGGMMSPGVVSSSPGPGPFT GK NSPTSS+GKG
Sbjct: 301 NYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKG 360

Query: 361 SGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420
           SGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD
Sbjct: 361 SGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420

Query: 421 SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 438

[Close]

BLAST of HG10022896 vs. NCBI nr
Match: XP_004148884.1 (RNA-binding protein BRN1 [Cucumis sativus] >KGN44838.1 hypothetical protein Csa_016202 [Cucumis sativus])

HSP 1 Score: 809.7 bits (2090), Expect = 1.3e-230
Identity = 423/456 (92.76%), Postives = 426/456 (93.42%), Query Frame = 0


Query: 1   MAEGSR-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGSR GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLE 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL            
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL------------ 120

Query: 121 RAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180
             EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA
Sbjct: 121 --EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180

Query: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPL 240
           LEAINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQA+NVLNADSQHPSLFGAM PL
Sbjct: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAM-PL 240

Query: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATR 300
           GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG+AMRGIPPDLGPGMATR
Sbjct: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATR 300

Query: 301 NYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKG 360
           NY MPPASY   AYPGVP LQHPMAYPGGMMSPGVVSSSPGPGPFT GK NSPTSS+GKG
Sbjct: 301 NYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKG 360

Query: 361 SGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420
           SGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD
Sbjct: 361 SGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420

Query: 421 SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           SAEAAQSAIS MNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 SAEAAQSAISTMNGCQLGGKKLKVQLKRDNKQSKPY 438

[Close]

BLAST of HG10022896 vs. NCBI nr
Match: XP_022953846.1 (RNA-binding protein BRN1-like [Cucurbita moschata])

HSP 1 Score: 804.3 bits (2076), Expect = 5.4e-229
Identity = 418/455 (91.87%), Postives = 422/455 (92.75%), Query Frame = 0


Query: 1   MAEGS-RGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRA 60
           MAEGS  GERK SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDK TRA
Sbjct: 1   MAEGSGGGERKGSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRA 60

Query: 61  SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLER 120
           SRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERL             
Sbjct: 61  SRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERL------------- 120

Query: 121 AEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAAL 180
            EHKLFIGMLPKNVSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAAL
Sbjct: 121 -EHKLFIGMLPKNVSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAAL 180

Query: 181 EAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLG 240
           EAINGK KMEGSSVPLVVKWADTEKERQARK QKAQSQASNVLNADSQ  SLFGA+ PLG
Sbjct: 181 EAINGKHKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAV-PLG 240

Query: 241 YVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATRN 300
           Y+PPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG+AMRGIPPDLGPGMATRN
Sbjct: 241 YIPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRN 300

Query: 301 YGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGS 360
           YGMPPASYVG AYP VPGLQHPMAYPGGMMSPGVVSSS  PGPFT G NNSPTSSLGKGS
Sbjct: 301 YGMPPASYVGSAYPAVPGLQHPMAYPGGMMSPGVVSSS--PGPFTGGNNNSPTSSLGKGS 360

Query: 361 GGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS 420
           G QIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS
Sbjct: 361 GSQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS 420

Query: 421 AEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
            EAAQSAIS MNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 VEAAQSAISRMNGCQLGGKKLKVQLKRDNKQSKPY 438

[Close]

BLAST of HG10022896 vs. NCBI nr
Match: KAA0057544.1 (RNA-binding protein BRN1 [Cucumis melo var. makuwa])

HSP 1 Score: 803.5 bits (2074), Expect = 9.3e-229
Identity = 425/473 (89.85%), Postives = 428/473 (90.49%), Query Frame = 0


Query: 1   MAEGSR-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGSR GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRG-----------------CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120
           ASRG                 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG
Sbjct: 61  ASRGVFFFFFSPFDFNFNYFSCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120

Query: 121 ELERLVCMDSNGWLFLERAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTS 180
           ELERL             AEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTS
Sbjct: 121 ELERL-------------AEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTS 180

Query: 181 KGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNV 240
           KGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQA+NV
Sbjct: 181 KGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNV 240

Query: 241 LNADSQHPSLFGAMPPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG 300
           LNADSQHPSLFGAM PLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG
Sbjct: 241 LNADSQHPSLFGAM-PLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG 300

Query: 301 SAMRGIPPDLGPGMATRNYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPG 360
           +AMRGIPPDLGPGMATRNY MPPASY   AYPGVP LQHPMAYPGGMMSPGVVSSSPGPG
Sbjct: 301 NAMRGIPPDLGPGMATRNYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPG 360

Query: 361 PFTSGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVF 420
           PFT GK NSPTSS+GKGSGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVF
Sbjct: 361 PFTGGK-NSPTSSMGKGSGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVF 420

Query: 421 VDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           VDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 VDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 456

[Close]

BLAST of HG10022896 vs. ExPASy Swiss-Prot
Match: Q8LFS6 (RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 9.8e-157
Identity = 300/457 (65.65%), Postives = 356/457 (77.90%), Query Frame = 0


Query: 1   MAEGSRGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAE     R+++  EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TRAS
Sbjct: 1   MAEAKEENREKN--EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERA 120
           RGCCF++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERL              
Sbjct: 61  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERL-------------- 120

Query: 121 EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE 180
           EHKLF+GMLPKNVSE EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E
Sbjct: 121 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME 180

Query: 181 AINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGY 240
           +INGK KMEGS+VPLVVKWADTE+ER  R++QKAQS  + + N D  +PSLFGA+ P+GY
Sbjct: 181 SINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGAL-PMGY 240

Query: 241 VPPYNGYGY-QAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG--SAMRGIPPD-LGPGMA 300
           VPPYNGYGY Q PG+YG   Y LPP+QNQ+ F NMI Q NQG  +A++G  PD + P +A
Sbjct: 241 VPPYNGYGYHQPPGTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLA 300

Query: 301 TRNYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLG 360
            RN+ MPP +Y+G  YP + G   P AYP G++SP  +SSSPG    +     S    +G
Sbjct: 301 RRNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVSPRPLSSSPG----SISPGMSTPLGIG 360

Query: 361 KGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVS 420
             S  Q EGP GANLFIY+IP+EFGD ELA +F++FG VLSAKVFVDK +GVSKCFGFVS
Sbjct: 361 LSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVS 420

Query: 421 YDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKP 454
           YDS  AAQ+AI MMNG  LGGKKLKVQLKRD+   +P
Sbjct: 421 YDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSNNGQP 433

[Close]

BLAST of HG10022896 vs. ExPASy Swiss-Prot
Match: Q8GZ26 (RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 1.1e-139
Identity = 273/449 (60.80%), Postives = 330/449 (73.50%), Query Frame = 0


Query: 11  ESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPS 70
           E + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++K TRA RGCCF+ CP+
Sbjct: 3   EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62

Query: 71  RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGMLP 130
           R++ADK +N+ HNKKTLPGASSPLQVKYADGELERL              EHKLF+GMLP
Sbjct: 63  REDADKVINSFHNKKTLPGASSPLQVKYADGELERL--------------EHKLFVGMLP 122

Query: 131 KNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEG 190
           KNVSE EV  LFS+YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG
Sbjct: 123 KNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEG 182

Query: 191 SSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGYVPPYNGYGYQ 250
           ++VPL+VKWADTEKERQAR++ K QS  S +   D Q+PS+FGA+ P+ YVPPYNGYGY 
Sbjct: 183 ANVPLIVKWADTEKERQARRLLKVQSHVSRL---DPQNPSMFGAL-PMSYVPPYNGYGYH 242

Query: 251 APGSYGLMQYHLPPMQNQSGFPNMI-PQLNQGSAMRG------IPPDLGPGMATRNYGMP 310
            PG+YG   Y LPP+Q Q  F N+I P    G A++G      +PP L P    RN+   
Sbjct: 243 VPGTYG---YMLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTA 302

Query: 311 PASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSGGQI 370
             +Y      G  GLQ+PMA+P GM+ P +  ++  PG   S    S  SSL      Q 
Sbjct: 303 LGNY------GYHGLQYPMAFPRGMIPPRLPLTTVSPG--ISNNGTSIPSSL------QT 362

Query: 371 EGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAA 430
           EGP GANLFIY+IP+EF D ELA +F+ FG+VLSAKVFVDK +G+SKCFGF+SYDS  AA
Sbjct: 363 EGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAA 413

Query: 431 QSAISMMNGCQLGGKKLKVQLKRDNKQSK 453
           Q+AI+ MNGCQL GKKLKVQLKRDN Q +
Sbjct: 423 QNAINTMNGCQLSGKKLKVQLKRDNGQQQ 413

[Close]

BLAST of HG10022896 vs. ExPASy Swiss-Prot
Match: A0JM51 (CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.8e-68
Identity = 172/482 (35.68%), Postives = 254/482 (52.70%), Query Frame = 0


Query: 9   RKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVIC 68
           ++  S ++ D++KLFVGQ+P+++ E  L  +F++F  + E+ +++D+ T   +GC F+  
Sbjct: 36  QQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTY 95

Query: 69  PSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGM 128
            +R  A KA  A H +KTLPG + P+QVK AD E        S G       + KLF+GM
Sbjct: 96  CARDSAIKAQTALHEQKTLPGMARPIQVKPADSE--------SRG------GDRKLFVGM 155

Query: 129 LPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKM 188
           L K  SE+EV+ +F  +G+I++  +LRG   +SKGCAF+K+ +  +A AA++A++G   M
Sbjct: 156 LSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTM 215

Query: 189 EGSSVPLVVKWADTEKERQARKVQK--------------------------AQSQASNVL 248
            G+S  LVVK+ADT+KER  R++Q+                           Q Q + + 
Sbjct: 216 PGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLALPISPYSAYAQALMQQQTTVLS 275

Query: 249 NADSQHPSLFGAMPP--LGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ 308
            +   + S   A P   +  +   N  G  A         H PP+   +  P ++  L  
Sbjct: 276 TSHGSYLSPSVAFPSCHIQQIGAVNLNGLPAAPITPASGLHSPPVIGTAAVPGLVAPLTN 335

Query: 309 GSAMRGIPPDLGPGMAT--RNYGMP-----PASYVGPAYPGVPGLQHPMA-YPGGMMSPG 368
           G       P   P + T   N  +P     PA  V   +P   G+Q   A YP   ++P 
Sbjct: 336 GFPGLVPFPSSHPALDTIYTNSIVPYPAQSPALTVESLHPSFTGVQQYSAIYPTAALTP- 395

Query: 369 VVSSSPGPGPFTSGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAF 428
           V  S+P P P                   Q EGP G NLFIYH+PQEFGD EL   F  F
Sbjct: 396 VTHSTPQPPPILQ----------------QREGPEGCNLFIYHLPQEFGDNELTQMFLPF 455

Query: 429 GRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSK 455
           G ++S+KVF+D+ +  SKCFGFVS+D+  +AQ+AI  MNG Q+G K+LKVQLKR    ++
Sbjct: 456 GNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDTTQ 486

[Close]

BLAST of HG10022896 vs. ExPASy Swiss-Prot
Match: Q6P0B1 (CUGBP Elav-like family member 2 OS=Danio rerio OX=7955 GN=celf2 PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.2e-67
Identity = 179/500 (35.80%), Postives = 258/500 (51.60%), Query Frame = 0


Query: 7   GERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR--ASRGCC 66
           G  + S Q + D++K+FVGQ+P+  +E +L  +F+ +  V ++NI+RD++     S+GCC
Sbjct: 31  GALEHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCC 90

Query: 67  FVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKL 126
           FV   +R+ A +A NA HN KTL G   P+Q+K AD E    V             + KL
Sbjct: 91  FVTFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSNAV------------EDRKL 150

Query: 127 FIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAING 186
           FIGM+ K  +E+++  +FS YG I++ +ILRG    S+GCAF+ + T+  A  A++A++ 
Sbjct: 151 FIGMVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQ 210

Query: 187 KCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGYVPPY 246
              MEG S P+VVK+ADT+K+++ R++Q+  +Q    LN+ S   SL G     G  P Y
Sbjct: 211 SQTMEGCSSPMVVKFADTQKDKEQRRLQQQLAQQMQQLNSASAWGSLTGL---TGLTPQY 270

Query: 247 NGYGYQAPGSYGLMQY---------HLPPMQN------------QSGFPNMIPQLNQGSA 306
                QA  S  L  +         +   +QN             S  P+    L   + 
Sbjct: 271 LALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQSSASPSTASALTSSTG 330

Query: 307 MRGIPPDLGPGMATRNYGMPPASYVGPAYPGVPG--------------LQHPMAYPGGMM 366
             G         A  +  M     +G    G+ G              +    A  GG+ 
Sbjct: 331 SLGALASPAGSTANSSAAMGSLGSLG-TLQGLAGATVGLNNINALAGSVNSMAALNGGLG 390

Query: 367 SPGVVSSSPGP----GPFTSGKNNSPTSSL-----------GKGSGGQIEGPPGANLFIY 426
           S G+ + S GP        SG      ++L              +G Q EGP GANLFIY
Sbjct: 391 STGLSNGSAGPMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIY 450

Query: 427 HIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQ 455
           H+PQEFGD ++   F  FG V+SAKVF+DK + +SKCFGFVSYD+  +AQ+AI  MNG Q
Sbjct: 451 HLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQ 510

[Close]

BLAST of HG10022896 vs. ExPASy Swiss-Prot
Match: Q08E07 (CUGBP Elav-like family member 3 OS=Bos taurus OX=9913 GN=CELF3 PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.2e-66
Identity = 172/487 (35.32%), Postives = 248/487 (50.92%), Query Frame = 0


Query: 15  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEA 74
           +E D++KLFVGQ+P+H+ E  L  +F++F  + E+ +I+DK T   +GC F+   +R  A
Sbjct: 2   KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSA 61

Query: 75  DKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGMLPKNVS 134
            KA +A H +KTLPG + P+QVK AD E        S G       + KLF+GML K  +
Sbjct: 62  LKAQSALHEQKTLPGMNRPIQVKPADSE--------SRG------EDRKLFVGMLGKQQT 121

Query: 135 EDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 194
           +++V  +F  +GTI +  +LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  
Sbjct: 122 DEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSS 181

Query: 195 LVVKWADTEKERQARKVQKAQSQ--------------ASNVLNADSQHPSLFGA----MP 254
           LVVK+ADTEKER  R++Q+  +Q              ++       Q  +L  A    + 
Sbjct: 182 LVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLS 241

Query: 255 PLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPG-- 314
           P+  +         A  + GL+   + P    S      P     + +  IP  LG    
Sbjct: 242 PMATMAAVQMQHMAAINANGLIATPITPSSGTS-----TPPAIAATPVSAIPAALGVNGY 301

Query: 315 --MATRNYGMP-----------------PASYVGPAYPGVPGLQHPMAYPGGM------- 374
             + T+  G P                 PA+ V P      G+QH  AYP          
Sbjct: 302 SPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAYPAAYSLVAPAF 361

Query: 375 -MSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELAN 434
              P +V+  P P P    +              Q EGP G N+FIYH+PQEF D E+  
Sbjct: 362 PQPPALVAQQPPPPPQQQQQQQQQQQ--------QREGPDGCNIFIYHLPQEFTDSEILQ 421

Query: 435 SFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRD 455
            F  FG V+SAKVFVD+ +  SKCFGFVS+D+  +AQ+AI  MNG Q+G K+LKVQLKR 
Sbjct: 422 MFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 461

[Close]

BLAST of HG10022896 vs. ExPASy TrEMBL
Match: A0A1S3BRF9 (RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1)

HSP 1 Score: 812.0 bits (2096), Expect = 1.3e-231
Identity = 424/456 (92.98%), Postives = 427/456 (93.64%), Query Frame = 0


Query: 1   MAEGSR-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGSR GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLE 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL            
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL------------ 120

Query: 121 RAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180
             EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA
Sbjct: 121 --EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180

Query: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPL 240
           LEAINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQA+NVLNADSQHPSLFGAM PL
Sbjct: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAM-PL 240

Query: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATR 300
           GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG+AMRGIPPDLGPGMATR
Sbjct: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATR 300

Query: 301 NYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKG 360
           NY MPPASY   AYPGVP LQHPMAYPGGMMSPGVVSSSPGPGPFT GK NSPTSS+GKG
Sbjct: 301 NYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKG 360

Query: 361 SGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420
           SGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD
Sbjct: 361 SGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420

Query: 421 SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 438

[Close]

BLAST of HG10022896 vs. ExPASy TrEMBL
Match: A0A0A0K5R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1)

HSP 1 Score: 809.7 bits (2090), Expect = 6.3e-231
Identity = 423/456 (92.76%), Postives = 426/456 (93.42%), Query Frame = 0


Query: 1   MAEGSR-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGSR GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLE 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL            
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL------------ 120

Query: 121 RAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180
             EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA
Sbjct: 121 --EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAA 180

Query: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPL 240
           LEAINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQA+NVLNADSQHPSLFGAM PL
Sbjct: 181 LEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAM-PL 240

Query: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATR 300
           GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG+AMRGIPPDLGPGMATR
Sbjct: 241 GYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATR 300

Query: 301 NYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKG 360
           NY MPPASY   AYPGVP LQHPMAYPGGMMSPGVVSSSPGPGPFT GK NSPTSS+GKG
Sbjct: 301 NYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKG 360

Query: 361 SGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420
           SGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD
Sbjct: 361 SGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYD 420

Query: 421 SAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           SAEAAQSAIS MNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 SAEAAQSAISTMNGCQLGGKKLKVQLKRDNKQSKPY 438

[Close]

BLAST of HG10022896 vs. ExPASy TrEMBL
Match: A0A6J1GP82 (RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4 SV=1)

HSP 1 Score: 804.3 bits (2076), Expect = 2.6e-229
Identity = 418/455 (91.87%), Postives = 422/455 (92.75%), Query Frame = 0


Query: 1   MAEGS-RGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRA 60
           MAEGS  GERK SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDK TRA
Sbjct: 1   MAEGSGGGERKGSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRA 60

Query: 61  SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLER 120
           SRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERL             
Sbjct: 61  SRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERL------------- 120

Query: 121 AEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAAL 180
            EHKLFIGMLPKNVSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAAL
Sbjct: 121 -EHKLFIGMLPKNVSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAAL 180

Query: 181 EAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLG 240
           EAINGK KMEGSSVPLVVKWADTEKERQARK QKAQSQASNVLNADSQ  SLFGA+ PLG
Sbjct: 181 EAINGKHKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAV-PLG 240

Query: 241 YVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATRN 300
           Y+PPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG+AMRGIPPDLGPGMATRN
Sbjct: 241 YIPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRN 300

Query: 301 YGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGS 360
           YGMPPASYVG AYP VPGLQHPMAYPGGMMSPGVVSSS  PGPFT G NNSPTSSLGKGS
Sbjct: 301 YGMPPASYVGSAYPAVPGLQHPMAYPGGMMSPGVVSSS--PGPFTGGNNNSPTSSLGKGS 360

Query: 361 GGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS 420
           G QIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS
Sbjct: 361 GSQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDS 420

Query: 421 AEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
            EAAQSAIS MNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 VEAAQSAISRMNGCQLGGKKLKVQLKRDNKQSKPY 438

[Close]

BLAST of HG10022896 vs. ExPASy TrEMBL
Match: A0A5A7UR22 (RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00150 PE=4 SV=1)

HSP 1 Score: 803.5 bits (2074), Expect = 4.5e-229
Identity = 425/473 (89.85%), Postives = 428/473 (90.49%), Query Frame = 0


Query: 1   MAEGSR-GERKESS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATR 60
           MAEGSR GERKESS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDK TR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRG-----------------CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120
           ASRG                 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG
Sbjct: 61  ASRGVFFFFFSPFDFNFNYFSCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120

Query: 121 ELERLVCMDSNGWLFLERAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTS 180
           ELERL             AEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTS
Sbjct: 121 ELERL-------------AEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTS 180

Query: 181 KGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNV 240
           KGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARK QKAQSQA+NV
Sbjct: 181 KGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNV 240

Query: 241 LNADSQHPSLFGAMPPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG 300
           LNADSQHPSLFGAM PLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG
Sbjct: 241 LNADSQHPSLFGAM-PLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG 300

Query: 301 SAMRGIPPDLGPGMATRNYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPG 360
           +AMRGIPPDLGPGMATRNY MPPASY   AYPGVP LQHPMAYPGGMMSPGVVSSSPGPG
Sbjct: 301 NAMRGIPPDLGPGMATRNYAMPPASY--SAYPGVPALQHPMAYPGGMMSPGVVSSSPGPG 360

Query: 361 PFTSGKNNSPTSSLGKGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVF 420
           PFT GK NSPTSS+GKGSGGQIEGPPGANLFIYHIPQEFGD ELANSFRAFGRVLSAKVF
Sbjct: 361 PFTGGK-NSPTSSMGKGSGGQIEGPPGANLFIYHIPQEFGDRELANSFRAFGRVLSAKVF 420

Query: 421 VDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           VDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 VDKTSGVSKCFGFVSYDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 456

[Close]

BLAST of HG10022896 vs. ExPASy TrEMBL
Match: A0A6J1DAN8 (RNA-binding protein BRN1 OS=Momordica charantia OX=3673 GN=LOC111018416 PE=4 SV=1)

HSP 1 Score: 795.4 bits (2053), Expect = 1.2e-226
Identity = 410/454 (90.31%), Postives = 420/454 (92.51%), Query Frame = 0


Query: 1   MAEGSRGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAEG R   + +SQEEEDSVKLFVGQVPKHM+E QLLAMFQEFALVDEVNIIRDK TRAS
Sbjct: 1   MAEGVR--ERSASQEEEDSVKLFVGQVPKHMSETQLLAMFQEFALVDEVNIIRDKTTRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERA 120
           RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL              
Sbjct: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERL-------------- 120

Query: 121 EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE 180
           EHKLFIGMLPKNVSED+VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETK+QAVAALE
Sbjct: 121 EHKLFIGMLPKNVSEDDVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKEQAVAALE 180

Query: 181 AINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGY 240
           AINGK KMEGSSVPLVVKWADTEKERQARK QKAQSQ SNVLNADSQHPSLFGAM PLGY
Sbjct: 181 AINGKYKMEGSSVPLVVKWADTEKERQARKAQKAQSQGSNVLNADSQHPSLFGAM-PLGY 240

Query: 241 VPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLGPGMATRNY 300
           VPPYNG+GYQAPGSYGLMQYHLPP+QNQSGF NMIPQLNQG+AMRGIPPDLGPGMA RNY
Sbjct: 241 VPPYNGFGYQAPGSYGLMQYHLPPIQNQSGFHNMIPQLNQGNAMRGIPPDLGPGMAARNY 300

Query: 301 GMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSG 360
           GMPPASYVG AYPGVPGLQHPMAYPGGMMSPGVVSSSPG G  T GK+NSPTSSLGKGSG
Sbjct: 301 GMPPASYVGSAYPGVPGLQHPMAYPGGMMSPGVVSSSPGSGLLTGGKSNSPTSSLGKGSG 360

Query: 361 GQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSA 420
           GQIEGPPGANLFIYHIPQEFGD ELANSFRA+GRVLSAKVFVDKTSGVSKCFGFVSYDS 
Sbjct: 361 GQIEGPPGANLFIYHIPQEFGDQELANSFRAYGRVLSAKVFVDKTSGVSKCFGFVSYDSP 420

Query: 421 EAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 455
           EAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY
Sbjct: 421 EAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 437

[Close]

BLAST of HG10022896 vs. TAIR 10
Match: AT4G03110.1 (RNA-binding protein-defense related 1 )

HSP 1 Score: 554.7 bits (1428), Expect = 7.0e-158
Identity = 300/457 (65.65%), Postives = 356/457 (77.90%), Query Frame = 0


Query: 1   MAEGSRGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAE     R+++  EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TRAS
Sbjct: 1   MAEAKEENREKN--EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERA 120
           RGCCF++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERL              
Sbjct: 61  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERL-------------- 120

Query: 121 EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE 180
           EHKLF+GMLPKNVSE EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E
Sbjct: 121 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME 180

Query: 181 AINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGY 240
           +INGK KMEGS+VPLVVKWADTE+ER  R++QKAQS  + + N D  +PSLFGA+ P+GY
Sbjct: 181 SINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGAL-PMGY 240

Query: 241 VPPYNGYGY-QAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG--SAMRGIPPD-LGPGMA 300
           VPPYNGYGY Q PG+YG   Y LPP+QNQ+ F NMI Q NQG  +A++G  PD + P +A
Sbjct: 241 VPPYNGYGYHQPPGTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLA 300

Query: 301 TRNYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLG 360
            RN+ MPP +Y+G  YP + G   P AYP G++SP  +SSSPG    +     S    +G
Sbjct: 301 RRNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVSPRPLSSSPG----SISPGMSTPLGIG 360

Query: 361 KGSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVS 420
             S  Q EGP GANLFIY+IP+EFGD ELA +F++FG VLSAKVFVDK +GVSKCFGFVS
Sbjct: 361 LSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVS 420

Query: 421 YDSAEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKP 454
           YDS  AAQ+AI MMNG  LGGKKLKVQLKRD+   +P
Sbjct: 421 YDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSNNGQP 433

[Close]

BLAST of HG10022896 vs. TAIR 10
Match: AT4G03110.2 (RNA-binding protein-defense related 1 )

HSP 1 Score: 509.2 bits (1310), Expect = 3.4e-144
Identity = 272/421 (64.61%), Postives = 327/421 (77.67%), Query Frame = 0


Query: 1   MAEGSRGERKESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRAS 60
           MAE     R+++  EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TRAS
Sbjct: 1   MAEAKEENREKN--EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRAS 60

Query: 61  RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERA 120
           RGCCF++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERL              
Sbjct: 61  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERL-------------- 120

Query: 121 EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE 180
           EHKLF+GMLPKNVSE EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E
Sbjct: 121 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME 180

Query: 181 AINGKCKMEGSSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGY 240
           +INGK KMEGS+VPLVVKWADTE+ER  R++QKAQS  + + N D  +PSLFGA+ P+GY
Sbjct: 181 SINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGAL-PMGY 240

Query: 241 VPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQG--SAMRGIPPD-LGPGMAT 300
           VPPYNGYGY  PG+YG   Y LPP+QNQ+ F NMI Q NQG  +A++G  PD + P +A 
Sbjct: 241 VPPYNGYGYHPPGTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLAR 300

Query: 301 RNYGMPPASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGK 360
           RN+ MPP +Y+G  YP + G   P AYP G++SP  +SSSPG    +     S    +G 
Sbjct: 301 RNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVSPRPLSSSPG----SISPGMSTPLGIGL 360

Query: 361 GSGGQIEGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSY 419
            S  Q EGP GANLFIY+IP+EFGD ELA +F++FG VLSAKVFVDK +GVSKCFG +S+
Sbjct: 361 SSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 397

[Close]

BLAST of HG10022896 vs. TAIR 10
Match: AT1G03457.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 502.7 bits (1293), Expect = 3.2e-142
Identity = 274/449 (61.02%), Postives = 333/449 (74.16%), Query Frame = 0


Query: 11  ESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPS 70
           E + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++K TRA RGCCF+ CP+
Sbjct: 3   EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62

Query: 71  RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGMLP 130
           R++ADK +N+ HNKKTLPGASSPLQVKYADGELERL  +D +        EHKLF+GMLP
Sbjct: 63  REDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSC-----NPEHKLFVGMLP 122

Query: 131 KNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEG 190
           KNVSE EV  LFS+YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG
Sbjct: 123 KNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEG 182

Query: 191 SSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGYVPPYNGYGYQ 250
           ++VPL+VKWADTEKERQAR++ K QS  S +   D Q+PS+FGA+ P+ YVPPYNGYGY 
Sbjct: 183 ANVPLIVKWADTEKERQARRLLKVQSHVSRL---DPQNPSMFGAL-PMSYVPPYNGYGYH 242

Query: 251 APGSYGLMQYHLPPMQNQSGFPNMI-PQLNQGSAMRG------IPPDLGPGMATRNYGMP 310
            PG+YG   Y LPP+Q Q  F N+I P    G A++G      +PP L P    RN+   
Sbjct: 243 VPGTYG---YMLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTA 302

Query: 311 PASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSGGQI 370
             +Y      G  GLQ+PMA+P GM+ P +  ++  PG   S    S  SSL      Q 
Sbjct: 303 LGNY------GYHGLQYPMAFPRGMIPPRLPLTTVSPG--ISNNGTSIPSSL------QT 362

Query: 371 EGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAA 430
           EGP GANLFIY+IP+EF D ELA +F+ FG+VLSAKVFVDK +G+SKCFGF+SYDS  AA
Sbjct: 363 EGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAA 422

Query: 431 QSAISMMNGCQLGGKKLKVQLKRDNKQSK 453
           Q+AI+ MNGCQL GKKLKVQLKRDN Q +
Sbjct: 423 QNAINTMNGCQLSGKKLKVQLKRDNGQQQ 422

[Close]

BLAST of HG10022896 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 498.0 bits (1281), Expect = 7.8e-141
Identity = 273/449 (60.80%), Postives = 330/449 (73.50%), Query Frame = 0


Query: 11  ESSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPS 70
           E + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++K TRA RGCCF+ CP+
Sbjct: 3   EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62

Query: 71  RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGMLP 130
           R++ADK +N+ HNKKTLPGASSPLQVKYADGELERL              EHKLF+GMLP
Sbjct: 63  REDADKVINSFHNKKTLPGASSPLQVKYADGELERL--------------EHKLFVGMLP 122

Query: 131 KNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEG 190
           KNVSE EV  LFS+YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG
Sbjct: 123 KNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEG 182

Query: 191 SSVPLVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPPLGYVPPYNGYGYQ 250
           ++VPL+VKWADTEKERQAR++ K QS  S +   D Q+PS+FGA+ P+ YVPPYNGYGY 
Sbjct: 183 ANVPLIVKWADTEKERQARRLLKVQSHVSRL---DPQNPSMFGAL-PMSYVPPYNGYGYH 242

Query: 251 APGSYGLMQYHLPPMQNQSGFPNMI-PQLNQGSAMRG------IPPDLGPGMATRNYGMP 310
            PG+YG   Y LPP+Q Q  F N+I P    G A++G      +PP L P    RN+   
Sbjct: 243 VPGTYG---YMLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTA 302

Query: 311 PASYVGPAYPGVPGLQHPMAYPGGMMSPGVVSSSPGPGPFTSGKNNSPTSSLGKGSGGQI 370
             +Y      G  GLQ+PMA+P GM+ P +  ++  PG   S    S  SSL      Q 
Sbjct: 303 LGNY------GYHGLQYPMAFPRGMIPPRLPLTTVSPG--ISNNGTSIPSSL------QT 362

Query: 371 EGPPGANLFIYHIPQEFGDLELANSFRAFGRVLSAKVFVDKTSGVSKCFGFVSYDSAEAA 430
           EGP GANLFIY+IP+EF D ELA +F+ FG+VLSAKVFVDK +G+SKCFGF+SYDS  AA
Sbjct: 363 EGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAA 413

Query: 431 QSAISMMNGCQLGGKKLKVQLKRDNKQSK 453
           Q+AI+ MNGCQL GKKLKVQLKRDN Q +
Sbjct: 423 QNAINTMNGCQLSGKKLKVQLKRDNGQQQ 413

[Close]

BLAST of HG10022896 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 155.6 bits (392), Expect = 9.5e-38
Identity = 108/321 (33.64%), Postives = 166/321 (51.71%), Query Frame = 0


Query: 15  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKATRASRGCCFVICPSRQEA 74
           +   +VKLFVG VP+  TE ++   F++   V EV +I+DK T   +GCCFV   + ++A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174

Query: 75  DKAVNACHNKKTLPGASSPLQVKYADGELERLVCMDSNGWLFLERAEHKLFIGMLPKNVS 134
           D+A+ A HN+ TLPG + P+QV+YADGE ER+  +           E KLF+G L K  +
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTL-----------EFKLFVGSLNKQAT 234

Query: 135 EDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVP 194
           E EV  +F Q+G ++D+ ++R   + S+GC F+KY +K+ A+AA++ +NG   M G + P
Sbjct: 235 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 294

Query: 195 LVVKWADTEKERQARKVQKAQSQASNVLNADSQHPSLFGAMPP--LGYVPPYNGYGYQAP 254
           L+V++A+ ++ +     + A                     PP  LG  P +   G +  
Sbjct: 295 LIVRFAEPKRPKPGESREMA---------------------PPVGLGSGPRFQASGPRPT 354

Query: 255 GSYGLMQ---YHLPPMQNQSGFPNMIPQLNQGSAMRGIPPDLG--PGMAT--RNYGMPPA 314
            ++G       H  P +  +   N+ P  N G  +RG   D    PG AT   N G P  
Sbjct: 355 SNFGDSSGDVSHTNPWRPATS-RNVGPPSNTG--IRGAGSDFSPKPGQATLPSNQGGPLG 393

Query: 315 SYVGPAYPGVPGLQHPMAYPG 327
            Y      GVP L +P+  PG
Sbjct: 415 GY------GVPPL-NPLPVPG 393

The following BLAST results are available for this feature:

BLAST of HG10022896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900154.1	4.2e-237	93.83	RNA-binding protein BRN1 [Benincasa hispida]	[more]
XP_008451423.1	2.6e-231	92.98	PREDICTED: RNA-binding protein BRN1 [Cucumis melo]	[more]
XP_004148884.1	1.3e-230	92.76	RNA-binding protein BRN1 [Cucumis sativus] >KGN44838.1 hypothetical protein Csa_...	[more]
XP_022953846.1	5.4e-229	91.87	RNA-binding protein BRN1-like [Cucurbita moschata]	[more]
KAA0057544.1	9.3e-229	89.85	RNA-binding protein BRN1 [Cucumis melo var. makuwa]	[more]

BLAST of HG10022896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFS6	9.8e-157	65.65	RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1	[more]
Q8GZ26	1.1e-139	60.80	RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1	[more]
A0JM51	3.8e-68	35.68	CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1	[more]
Q6P0B1	4.2e-67	35.80	CUGBP Elav-like family member 2 OS=Danio rerio OX=7955 GN=celf2 PE=2 SV=1	[more]
Q08E07	1.2e-66	35.32	CUGBP Elav-like family member 3 OS=Bos taurus OX=9913 GN=CELF3 PE=2 SV=1	[more]

BLAST of HG10022896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRF9	1.3e-231	92.98	RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1	[more]
A0A0A0K5R5	6.3e-231	92.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1	[more]
A0A6J1GP82	2.6e-229	91.87	RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4...	[more]
A0A5A7UR22	4.5e-229	89.85	RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1DAN8	1.2e-226	90.31	RNA-binding protein BRN1 OS=Momordica charantia OX=3673 GN=LOC111018416 PE=4 SV=...	[more]

BLAST of HG10022896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03110.1	7.0e-158	65.65	RNA-binding protein-defense related 1	[more]
AT4G03110.2	3.4e-144	64.61	RNA-binding protein-defense related 1	[more]
AT1G03457.2	3.2e-142	61.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G03457.1	7.8e-141	60.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G16280.2	9.5e-38	33.64	RNA binding;abscisic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 20..35 score: 30.62 coord: 127..142 score: 32.71 coord: 142..154 score: 52.82 coord: 183..200 score: 34.26
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 123..198 e-value: 5.4E-17 score: 72.5 coord: 370..443 e-value: 1.9E-20 score: 83.9 coord: 21..97 e-value: 1.1E-16 score: 71.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..86 e-value: 3.8E-13 score: 49.1 coord: 371..441 e-value: 5.2E-14 score: 51.8 coord: 124..186 e-value: 2.7E-16 score: 59.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 369..447 score: 16.312523
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 122..202 score: 16.107859
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..101 score: 13.600715
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 347..453 e-value: 3.7E-24 score: 86.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..105 e-value: 7.9E-25 score: 88.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 117..211 e-value: 2.7E-24 score: 87.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 337..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..362
None	No IPR available	PANTHER	PTHR24012:SF844	RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED	coord: 14..441
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 14..441
None	No IPR available	CDD	cd12362	RRM3_CELF1-6	coord: 371..443 e-value: 7.63014E-41 score: 138.539
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 123..198 e-value: 8.88194E-35 score: 122.271
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 21..97 e-value: 8.0034E-39 score: 133.056
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..103
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 122..449

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022896.1	HG10022896.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding