HG10022858 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022858
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein naked cuticle homolog 2-like
Location	Chr05: 29037394 .. 29037861 (-)
RNA-Seq Expression	HG10022858
Synteny	HG10022858

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGATTCAATATCCTTATACTTGCAGTAACGTTGTTCTTGGCTCTGATTACTGAAACAGAGGGTCAATGGCGGCAGCCACCGGACGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTGCACTAGCAAACTATGCTTGCGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCACCTCCATCATCATCACTCTCTGATAACCATGAAAGCCAAGGCACTCCCAGCCACACACACCGGCACGGACACCAGCACAGACACCCGCATGGACACCAGCACATGATCCCGCTATCGCCAATGGAGGAGAATTGTTGCAAGTGGGTGCAGCAGTTGGATAGTGAATGTATATGCGGGCTGTTGTCCCGGTTGCCTGCATTCCTAGAGAGGCCTCAGCATAACTTTTCTGTTACCGTTGGCGGTTCGTGTGATGCTACATACTCGTGCGGAGGAGGAATCAAAATCTAA

mRNA sequence

ATGGGGAGATTCAATATCCTTATACTTGCAGTAACGTTGTTCTTGGCTCTGATTACTGAAACAGAGGGTCAATGGCGGCAGCCACCGGACGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTGCACTAGCAAACTATGCTTGCGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCACCTCCATCATCATCACTCTCTGATAACCATGAAAGCCAAGGCACTCCCAGCCACACACACCGGCACGGACACCAGCACAGACACCCGCATGGACACCAGCACATGATCCCGCTATCGCCAATGGAGGAGAATTGTTGCAAGTGGGTGCAGCAGTTGGATAGTGAATGTATATGCGGGCTGTTGTCCCGGTTGCCTGCATTCCTAGAGAGGCCTCAGCATAACTTTTCTGTTACCGTTGGCGGTTCGTGTGATGCTACATACTCGTGCGGAGGAGGAATCAAAATCTAA

Coding sequence (CDS)

ATGGGGAGATTCAATATCCTTATACTTGCAGTAACGTTGTTCTTGGCTCTGATTACTGAAACAGAGGGTCAATGGCGGCAGCCACCGGACGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTGCACTAGCAAACTATGCTTGCGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCACCTCCATCATCATCACTCTCTGATAACCATGAAAGCCAAGGCACTCCCAGCCACACACACCGGCACGGACACCAGCACAGACACCCGCATGGACACCAGCACATGATCCCGCTATCGCCAATGGAGGAGAATTGTTGCAAGTGGGTGCAGCAGTTGGATAGTGAATGTATATGCGGGCTGTTGTCCCGGTTGCCTGCATTCCTAGAGAGGCCTCAGCATAACTTTTCTGTTACCGTTGGCGGTTCGTGTGATGCTACATACTCGTGCGGAGGAGGAATCAAAATCTAA

Protein sequence

MGRFNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPPPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGLLSRLPAFLERPQHNFSVTVGGSCDATYSCGGGIKI

Homology

[Close]

BLAST of HG10022858 vs. NCBI nr
Match: XP_038899044.1 (uncharacterized protein LOC120086453 [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 6.9e-75
Identity = 140/155 (90.32%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MGRFNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 60
           MGRF ILI +VTLFLALIT+TEGQW QPPDVAPRPLCASQIALANYACAMLPYSTVLPPP
Sbjct: 1   MGRFKILIFSVTLFLALITDTEGQW-QPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 60

Query: 61  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 120
           PPS SLSDNHESQG+P+  HRH HQH H HGHQ  IPLSPMEENCCKWVQQLDSECICGL
Sbjct: 61  PPSLSLSDNHESQGSPNQRHRHTHQHGHHHGHQQKIPLSPMEENCCKWVQQLDSECICGL 120

Query: 121 LSRLPAFLERPQHNFSVTVGGSCDATYSCGGGIKI 156
           LSRLPAFLERPQHNFSVTVGGSCDATYSCGGGIKI
Sbjct: 121 LSRLPAFLERPQHNFSVTVGGSCDATYSCGGGIKI 154

[Close]

BLAST of HG10022858 vs. NCBI nr
Match: XP_031744964.1 (uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical protein Csa_016586 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 112/151 (74.17%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MGRFNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 60
           MGRF ILIL+V LFL LIT++E QW QPP VAPRPLCASQI LANYACA LPY+ + PPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQW-QPPGVAPRPLCASQITLANYACATLPYAKLPPPP 60

Query: 61  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 120
           PPSSSLS+N +SQG+P H H HGH HR    H H IPL+P+EENCCKWVQQ+DSEC+C L
Sbjct: 61  PPSSSLSNNQDSQGSPVHGHHHGHHHR----HHHKIPLTPIEENCCKWVQQVDSECVCEL 120

Query: 121 LSRLPAFLERPQHNFSVTVGGSCDATYSCGG 152
           LSRLPAFL+RP HNFSVT+GGSC+ATY CGG
Sbjct: 121 LSRLPAFLKRPIHNFSVTIGGSCNATYWCGG 146

[Close]

BLAST of HG10022858 vs. NCBI nr
Match: XP_023548911.1 (uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-54
Identity = 113/152 (74.34%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   MGRFNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 60
           MGRF IL+ AVTLFLALI +TE QW QPP VAPRP C SQIALAN ACAMLPYST +   
Sbjct: 1   MGRFKILLFAVTLFLALIPDTEAQW-QPPKVAPRPPCPSQIALANLACAMLPYST-MALS 60

Query: 61  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 120
           PPS SLSDNHES G P +   H H H H HGHQH I LSPMEENCCKWVQQLDS+C+C L
Sbjct: 61  PPSVSLSDNHESHGPPPN---HRHLHTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRL 120

Query: 121 LSRLPAFLERPQHNFSVTVGGSCDATYSCGGG 153
           LSRLPAFLERPQH  S +VGGSC+AT+SCGGG
Sbjct: 121 LSRLPAFLERPQHKISFSVGGSCNATFSCGGG 147

[Close]

BLAST of HG10022858 vs. NCBI nr
Match: KAA0057606.1 (hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK20987.1 hypothetical protein E5676_scaffold328G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.8e-52
Identity = 103/131 (78.63%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 23  GQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPPPSSSLSDNHESQGTPSHTHRH 82
           GQW QPP VAPRPLCASQIALANYACA LPYS +LPPPPPSSSLS NH+SQG+P HTH H
Sbjct: 83  GQW-QPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGSPVHTHHH 142

Query: 83  GHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGLLSRLPAFLERPQHNFSVTVGG- 142
           GH HR    H H IPLSP+EENCCKWVQQ+DSEC+C LLSRLPAFL+RP HNFSV +GG 
Sbjct: 143 GHHHR----HHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVIIGGS 202

Query: 143 -SCDATYSCGG 152
            SC+ATYSCGG
Sbjct: 203 LSCNATYSCGG 208

[Close]

BLAST of HG10022858 vs. NCBI nr
Match: KAG7014427.1 (hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-46
Identity = 103/142 (72.54%), Postives = 110/142 (77.46%), Query Frame = 0


Query: 1   MGRFNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 60
           M RF ILI AVTLFLALI +TE QW QPP VAPRP C SQIALAN ACAMLPYST +   
Sbjct: 1   MERFKILIFAVTLFLALIPDTEAQW-QPPKVAPRPPCPSQIALANLACAMLPYST-MALS 60

Query: 61  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 120
           PPS SLSDNHES G P +   H H   H HGHQH I LSPMEENCCKWVQQLDS+C+C L
Sbjct: 61  PPSLSLSDNHESHGLPPN---HKHLRTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRL 120

Query: 121 LSRLPAFLERPQHNFSVTVGGS 143
           LSRLPAFLERPQH  S +VGG+
Sbjct: 121 LSRLPAFLERPQHKISFSVGGN 137

[Close]

BLAST of HG10022858 vs. ExPASy TrEMBL
Match: A0A0A0KAN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58
Identity = 112/151 (74.17%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MGRFNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 60
           MGRF ILIL+V LFL LIT++E QW QPP VAPRPLCASQI LANYACA LPY+ + PPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQW-QPPGVAPRPLCASQITLANYACATLPYAKLPPPP 60

Query: 61  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 120
           PPSSSLS+N +SQG+P H H HGH HR    H H IPL+P+EENCCKWVQQ+DSEC+C L
Sbjct: 61  PPSSSLSNNQDSQGSPVHGHHHGHHHR----HHHKIPLTPIEENCCKWVQQVDSECVCEL 120

Query: 121 LSRLPAFLERPQHNFSVTVGGSCDATYSCGG 152
           LSRLPAFL+RP HNFSVT+GGSC+ATY CGG
Sbjct: 121 LSRLPAFLKRPIHNFSVTIGGSCNATYWCGG 146

[Close]

BLAST of HG10022858 vs. ExPASy TrEMBL
Match: A0A5A7UTY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00120 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.3e-52
Identity = 103/131 (78.63%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 23  GQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPPPSSSLSDNHESQGTPSHTHRH 82
           GQW QPP VAPRPLCASQIALANYACA LPYS +LPPPPPSSSLS NH+SQG+P HTH H
Sbjct: 83  GQW-QPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGSPVHTHHH 142

Query: 83  GHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGLLSRLPAFLERPQHNFSVTVGG- 142
           GH HR    H H IPLSP+EENCCKWVQQ+DSEC+C LLSRLPAFL+RP HNFSV +GG 
Sbjct: 143 GHHHR----HHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVIIGGS 202

Query: 143 -SCDATYSCGG 152
            SC+ATYSCGG
Sbjct: 203 LSCNATYSCGG 208

[Close]

BLAST of HG10022858 vs. ExPASy TrEMBL
Match: A0A0B2QE80 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007235 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 75/150 (50.00%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 4   FNILILAVTLFLALITETEGQWRQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPPPS 63
           FN++ LA+TLFLA++ + E Q +  P   PRPLCASQ AL NYAC+ LP+S  +PP  PS
Sbjct: 4   FNLIALALTLFLAIVPKMESQIKPIPK-TPRPLCASQFALVNYACSRLPFSPGVPPDSPS 63

Query: 64  SSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGLLSR 123
               +N+    +  H HRHGH+HRH   HQ     +P E+NCC+W +++D +C+C LL R
Sbjct: 64  PDEENNNHHNRSHRHGHRHGHRHRH---HQ-----TPDEDNCCRWAKEVDHQCVCELLLR 123

Query: 124 LPAFLERPQHNFSVTVGGSCDATYSCGGGI 154
           LP FL RP H +++ VG SCD TYSCG  I
Sbjct: 124 LPPFLIRPSHQYTLKVGASCDITYSCGAPI 144

[Close]

BLAST of HG10022858 vs. ExPASy TrEMBL
Match: K7MYJ6 (Uncharacterized protein OS=Glycine max OX=3847 GN=102669806 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.2e-33
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 4   FNILILAVTLFLALITETEGQWR---QPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 63
           FN++ LA+T+FLAL+ + E   R    P    PRPLCASQ AL NYAC+ LP+S  +PP 
Sbjct: 4   FNLITLAMTIFLALVPKMESHIRTPGMPMPKTPRPLCASQFALVNYACSRLPFSLGVPPD 63

Query: 64  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 123
            PS+  S N E +G  ++ H   H+H H HGH+H    +  E+NCC+W +++D++C+C L
Sbjct: 64  SPSTPPSPNDE-EGHRNNHHNGSHRHGHRHGHKHRNHQTADEDNCCRWAKEVDNQCVCEL 123

Query: 124 LSRLPAFLERPQHNFSVTVGGSCDATYSCGGGI 154
           L RLP FL RP H +++ VG SCD TYSCG  I
Sbjct: 124 LLRLPPFLIRPLHQYTLNVGESCDITYSCGAPI 155

[Close]

BLAST of HG10022858 vs. ExPASy TrEMBL
Match: A0A0B2SLT8 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_028376 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.2e-33
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 4   FNILILAVTLFLALITETEGQWR---QPPDVAPRPLCASQIALANYACAMLPYSTVLPPP 63
           FN++ LA+T+FLAL+ + E   R    P    PRPLCASQ AL NYAC+ LP+S  +PP 
Sbjct: 4   FNLITLAMTIFLALVPKMESHIRTPGMPMPKTPRPLCASQFALVNYACSRLPFSLGVPPD 63

Query: 64  PPSSSLSDNHESQGTPSHTHRHGHQHRHPHGHQHMIPLSPMEENCCKWVQQLDSECICGL 123
            PS+  S N E +G  ++ H   H+H H HGH+H    +  E+NCC+W +++D++C+C L
Sbjct: 64  SPSTPPSPNDE-EGHRNNHHNGSHRHGHRHGHKHRNHQTADEDNCCRWAKEVDNQCVCEL 123

Query: 124 LSRLPAFLERPQHNFSVTVGGSCDATYSCGGGI 154
           L RLP FL RP H +++ VG SCD TYSCG  I
Sbjct: 124 LLRLPPFLIRPLHQYTLNVGESCDITYSCGAPI 155

[Close]

BLAST of HG10022858 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-19
Identity = 75/247 (30.36%), Postives = 94/247 (38.06%), Query Frame = 0


Query: 7   LILAVTLFLALITETEGQ--WRQPPDVAPRPLCASQIALANYACAMLPYSTVLPP----P 66
           L +AVTL LAL + T GQ   + PP   PRPLCASQ ALANYAC+ LP  TV PP    P
Sbjct: 4   LFIAVTLALALSSFTRGQRVIQIPP---PRPLCASQYALANYACSRLPMHTVPPPAPITP 63

Query: 67  PPS---------------------------------SSLSDNHESQGTPSHTH------- 126
           PP+                                     D+H+      H H       
Sbjct: 64  PPAPIAPPPPEHDHHDHDHDHDHDHDHDDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDR 123

Query: 127 --------------------------------------------------------RHGH 152
                                                                   R  H
Sbjct: 124 DRDRDRDRDRDRDHDRAHDDHDHNHDHDNDHNDNNHDHNHDADHHNNDDNSHDQHRRRHH 183

The following BLAST results are available for this feature:

BLAST of HG10022858 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899044.1	6.9e-75	90.32	uncharacterized protein LOC120086453 [Benincasa hispida]	[more]
XP_031744964.1	3.4e-58	74.17	uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical ...	[more]
XP_023548911.1	3.9e-54	74.34	uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo]	[more]
KAA0057606.1	4.8e-52	78.63	hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK2098...	[more]
KAG7014427.1	3.0e-46	72.54	hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10022858 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022858 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN7	1.7e-58	74.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1	[more]
A0A5A7UTY5	2.3e-52	78.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0B2QE80	1.1e-33	50.00	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007235 PE=4 SV=1	[more]
K7MYJ6	9.2e-33	48.37	Uncharacterized protein OS=Glycine max OX=3847 GN=102669806 PE=4 SV=1	[more]
A0A0B2SLT8	9.2e-33	48.37	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_028376 PE=4 SV=1	[more]

BLAST of HG10022858 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63095.1	4.4e-19	30.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..93
None	No IPR available	PANTHER	PTHR34377:SF6	SUBFAMILY NOT NAMED	coord: 4..153
None	No IPR available	PANTHER	PTHR34377	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 4..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022858.1	HG10022858.1	mRNA