HG10022825 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022825
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box/kelch-repeat protein SKIP30-like
Location	Chr05: 28709714 .. 28710655 (+)
RNA-Seq Expression	HG10022825
Synteny	HG10022825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGTCTGATTGAAGGTCTCCCTGATGCAGTTGCCCTTAGATGCGTTGCTTTTATTCCATTTTACCTCTACCCCAAGTTGGAACTCGTTTCTCGCTCCTGGAAAGCTGCCATTTGGAGTGCTGAACTGTTTAGAGCTCACAGGAGGTTGGTTCATTGGAGGATTTACTATGTGTATGCTGTTATGATGTAGATAATAAATGGCAGCTTTATGACCCTCTTCGAGACCTTTGGATCACCCTTCCTCGACTTCCCTCGACAATAAGGCATTATTTTGGTGTTGTCTCCATTTCTCAAAAGCTACTTGTTATTGGTGGTTTCAGCTTTAGTGCTGATCCAGTGACCGGTCATTTTGATGAAGATTTGTCGTGCAATGAGGTATGGTCCCATGACCCTATAACCCGAAACTGGTCGATGCGAGCACCAATGCTCAAGTCATGTGGAATGTTTGCTTGCAGTGTTTTGGATGGGAAGATCATTGTTGCAGGTGGCATGGATAGCAAATATAAAATAACTTCTACAGTAGAAATTTATGGTCCTGAGAAGGATAATTTGGTTTCCATTACCTGATCTACCTCACCCCTGTGGTGCATGCTGCATTGGAGTAGTGAGTGAAGGAAAATTGCACTTTGTATACAAGGGAATGCCCGTAGTGCAAACGTTTGATAGTTTGGAGTGTAGGTGGAGAGTTGAGGAATATGGTTGGTTTACCAGCCCGAGCTCGTTGGCTGCTGTTCAAGATTCACTCTTTAGCTTGAGCCAAGGATTTATCTTCAAGCAGGATGGACCACATTACCAACTTTTGATTCCGGCGCCTCAGTTTCTAGGCAGAGTCGGGACAGGAATGATCTATTTTAGAGGCAAACTGTATGTGATTGGAGGAATGTATCGACACGAGGACGAGTATATAAATCTATCTGATATGCATGTCTTACGCTGA

mRNA sequence

ATGTCTGGTCTGATTGAAGGTCTCCCTGATGCAGTTGCCCTTAGATGCGTTGCTTTTATTCCATTTTACCTCTACCCCAAGTTGGAACTCGTTTCTCGCTCCTGGAAAGCTGCCATTTGGAGTGCTGAACTGTTTAGAGCTCACAGGAGCTTTAGTGCTGATCCAGTGACCGGTCATTTTGATGAAGATTTGTCGTGCAATGAGGTATGGTCCCATGACCCTATAACCCGAAACTGGTCGATGCGAGCACCAATGCTCAAGTCATGTGGAATGTTTGCTTGCAGTGTTTTGGATGGGAAGATCATTGTTGCAGTGAGTGAAGGAAAATTGCACTTTGTATACAAGGGAATGCCCGTAGTGCAAACGTTTGATAGTTTGGAGTGTAGGTGGAGAGTTGAGGAATATGGTTGGTTTACCAGCCCGAGCTCGTTGGCTGCTGTTCAAGATTCACTCTTTAGCTTGAGCCAAGGATTTATCTTCAAGCAGGATGGACCACATTACCAACTTTTGATTCCGGCGCCTCAGTTTCTAGGCAGAGTCGGGACAGGAATGATCTATTTTAGAGGCAAACTGTATGTGATTGGAGGAATGTATCGACACGAGGACGAGTATATAAATCTATCTGATATGCATGTCTTACGCTGA

Coding sequence (CDS)

ATGTCTGGTCTGATTGAAGGTCTCCCTGATGCAGTTGCCCTTAGATGCGTTGCTTTTATTCCATTTTACCTCTACCCCAAGTTGGAACTCGTTTCTCGCTCCTGGAAAGCTGCCATTTGGAGTGCTGAACTGTTTAGAGCTCACAGGAGCTTTAGTGCTGATCCAGTGACCGGTCATTTTGATGAAGATTTGTCGTGCAATGAGGTATGGTCCCATGACCCTATAACCCGAAACTGGTCGATGCGAGCACCAATGCTCAAGTCATGTGGAATGTTTGCTTGCAGTGTTTTGGATGGGAAGATCATTGTTGCAGTGAGTGAAGGAAAATTGCACTTTGTATACAAGGGAATGCCCGTAGTGCAAACGTTTGATAGTTTGGAGTGTAGGTGGAGAGTTGAGGAATATGGTTGGTTTACCAGCCCGAGCTCGTTGGCTGCTGTTCAAGATTCACTCTTTAGCTTGAGCCAAGGATTTATCTTCAAGCAGGATGGACCACATTACCAACTTTTGATTCCGGCGCCTCAGTTTCTAGGCAGAGTCGGGACAGGAATGATCTATTTTAGAGGCAAACTGTATGTGATTGGAGGAATGTATCGACACGAGGACGAGTATATAAATCTATCTGATATGCATGTCTTACGCTGA

Protein sequence

MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHRSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAVSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEYINLSDMHVLR

Homology

[Close]

BLAST of HG10022825 vs. NCBI nr
Match: XP_022150165.1 (F-box/kelch-repeat protein SKIP30-like [Momordica charantia])

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-56
Identity = 139/318 (43.71%), Postives = 167/318 (52.52%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+ALRC+A +P+YL+PKLELVSRSWKAA  SAELFRA             
Sbjct: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            RS + DP+TG 
Sbjct: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++LS NEVWS DP+TRNW MRAPML    MFAC VL+GKIIVA               
Sbjct: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 214
                                    V  GK+H +YKG   VQ FD+LE +WRVE+YGW  
Sbjct: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWL- 240

[Close]

BLAST of HG10022825 vs. NCBI nr
Match: KAG7014455.1 (F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-52
Identity = 126/318 (39.62%), Postives = 162/318 (50.94%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA             
Sbjct: 63  MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 122

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            R  + DPVTG 
Sbjct: 123 CSYDPNNTWQLYDPLQNLWMTLPELPSKIRHLANFGAVSTSQKLFVLGGRGDAVDPVTGD 182

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++ S NEVWS DP+TR WSMRAPML     FAC V+DGKI+VA               
Sbjct: 183 RDDNSSTNEVWSFDPVTRTWSMRAPMLVPRSTFACCVVDGKIVVAGGFTSLSKSTSQAEM 242

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 215
                                    +  G++H +Y G+  VQ FDSLE +WRVE+YGW  
Sbjct: 243 YDSEKDVWIPLPDLLHTHDSTCIGLMIGGRMHIMYGGVSTVQVFDSLELKWRVEDYGWL- 302

[Close]

BLAST of HG10022825 vs. NCBI nr
Match: XP_022991959.1 (F-box/kelch-repeat protein SKIP30-like [Cucurbita maxima] >XP_022991960.1 F-box/kelch-repeat protein SKIP30-like [Cucurbita maxima])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-52
Identity = 128/318 (40.25%), Postives = 161/318 (50.63%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA             
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            R  + DPVTG 
Sbjct: 61  CSYDPNNTWKLYDPLQNLWMTLPELPSKIKHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            +E  S NEVWS DP+TR WSMRAPML    MFAC V+DGKI+VA               
Sbjct: 121 REETSSTNEVWSFDPVTRMWSMRAPMLVPRSMFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 215
                                    +  GK+H +Y G+  VQ FDSLE +WRVE YGW  
Sbjct: 181 YDIEKDVWIPLPDLLHTRDSTCIGLMIGGKMHIMYGGVSTVQVFDSLELKWRVEYYGWL- 240

[Close]

BLAST of HG10022825 vs. NCBI nr
Match: KAG6575922.1 (F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-52
Identity = 126/318 (39.62%), Postives = 162/318 (50.94%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA             
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            R  + DPVTG 
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKIRHLANFGAVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++ S NEVWS DP+TR WSMRAPML     FAC V+DGKI+VA               
Sbjct: 121 RDDNSSTNEVWSFDPVTRTWSMRAPMLVPRSTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 215
                                    +  G++H +Y G+  VQ FDSLE +WRVE+YGW  
Sbjct: 181 YDSEKDVWIPLPDLLHTHDSTCIGLMIGGRMHIMYGGVSTVQVFDSLELKWRVEDYGWL- 240

[Close]

BLAST of HG10022825 vs. NCBI nr
Match: XP_038900158.1 (F-box/kelch-repeat protein SKIP30-like [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-52
Identity = 133/319 (41.69%), Postives = 162/319 (50.78%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MS LIEGLPDA++LRC+A+IP+YL PKLELVSRSWKAAI SAELFRA             
Sbjct: 1   MSSLIEGLPDAISLRCLAYIPYYLLPKLELVSRSWKAAIRSAELFRARHEVGLYEDFLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            RS + DPVTG 
Sbjct: 61  SSYHPNNTWQLYDPLQNLWMTLPELPSKRRHLANFGAVSISQKLFVLGGRSDAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++ S NEVWS D +TR WSMRAPML    MFAC V+DGKI+VA               
Sbjct: 121 RDDNFSTNEVWSFDAVTRMWSMRAPMLVPRAMFACCVVDGKIVVAGGFTSISKSTSKAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 214
                                    V  GK+H VY G   VQ F+S E +WRVE+YGW  
Sbjct: 181 YDSEKDIWIPLPDLPHTHDSTCIGLVIGGKMHIVYNGESTVQVFESSEIKWRVEDYGWLH 240

[Close]

BLAST of HG10022825 vs. ExPASy Swiss-Prot
Match: Q9M1W7 (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-35
Identity = 90/298 (30.20%), Postives = 134/298 (44.97%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR----------- 60
           MSGL++G+P+AVALRC+A +P +L+P LELVSRSW+AAI S ELFR  +           
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  --------------------------------------------------SFSADPVTGH 120
                                                             S +  PVTG 
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D   + ++VWS+D + R W+ RA ML    MFAC VL GKI+VA               
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 198
                                    V  GK+H ++KG+  VQ  +S++  W V++YGW  
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

[Close]

BLAST of HG10022825 vs. ExPASy TrEMBL
Match: A0A6J1D7Q9 (F-box/kelch-repeat protein SKIP30-like OS=Momordica charantia OX=3673 GN=LOC111018411 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-56
Identity = 139/318 (43.71%), Postives = 167/318 (52.52%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+ALRC+A +P+YL+PKLELVSRSWKAA  SAELFRA             
Sbjct: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            RS + DP+TG 
Sbjct: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++LS NEVWS DP+TRNW MRAPML    MFAC VL+GKIIVA               
Sbjct: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 214
                                    V  GK+H +YKG   VQ FD+LE +WRVE+YGW  
Sbjct: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWL- 240

[Close]

BLAST of HG10022825 vs. ExPASy TrEMBL
Match: A0A6J1JW98 (F-box/kelch-repeat protein SKIP30-like OS=Cucurbita maxima OX=3661 GN=LOC111488452 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 128/318 (40.25%), Postives = 161/318 (50.63%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA             
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            R  + DPVTG 
Sbjct: 61  CSYDPNNTWKLYDPLQNLWMTLPELPSKIKHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            +E  S NEVWS DP+TR WSMRAPML    MFAC V+DGKI+VA               
Sbjct: 121 REETSSTNEVWSFDPVTRMWSMRAPMLVPRSMFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 215
                                    +  GK+H +Y G+  VQ FDSLE +WRVE YGW  
Sbjct: 181 YDIEKDVWIPLPDLLHTRDSTCIGLMIGGKMHIMYGGVSTVQVFDSLELKWRVEYYGWL- 240

[Close]

BLAST of HG10022825 vs. ExPASy TrEMBL
Match: A0A6J1GPT2 (F-box/kelch-repeat protein SKIP30-like OS=Cucurbita moschata OX=3662 GN=LOC111456033 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 9.4e-52
Identity = 125/318 (39.31%), Postives = 162/318 (50.94%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA             
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            R  + DPVTG 
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKITHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            +++ S NEVWS DP+TR WSMRAPML     FAC V+DGKI+VA               
Sbjct: 121 REDNSSTNEVWSFDPVTRTWSMRAPMLVPRYTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 215
                                    +  GK+H +Y G+  VQ FDSLE +WRVE+YGW  
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMHVMYGGVSTVQVFDSLELKWRVEDYGWL- 240

[Close]

BLAST of HG10022825 vs. ExPASy TrEMBL
Match: A0A1S3BQL6 (F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo OX=3656 GN=LOC103492650 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 132/319 (41.38%), Postives = 159/319 (49.84%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA++LRC+A+IP+YL+PKL LVSRSWKAAI S ELFRA             
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLALVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            RS + DPVTG 
Sbjct: 61  CSYHPNNTWQLYDPLPNHWMTLPELPSKRMHLGNFCTVSTSQKLFVLGGRSIAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVA               
Sbjct: 121 RDDNFSTNEVWSFDPITRMWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 214
                                    V  GK+H VY G+  VQ  DSLE +WRVE+YGW  
Sbjct: 181 YDSEKDVWTLLPDLLQTHDSTCNGWVIRGKMHIVYNGVSTVQVLDSLEMKWRVEDYGWL- 240

[Close]

BLAST of HG10022825 vs. ExPASy TrEMBL
Match: A0A5A7V6S8 (F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001400 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.1e-51
Identity = 131/319 (41.07%), Postives = 158/319 (49.53%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH------------ 60
           MSGLIEGLPDA++LRC+A+IP+YL+PKL LVSRSWKAAI S ELFRA             
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLALVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  -------------------------------------------------RSFSADPVTGH 120
                                                            RS + DPVTG 
Sbjct: 61  CSYHPNNTWQLYDPLPNHWMTLPELPSKRMHLGNFCTVSTSQKLFVLGGRSIAVDPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVA               
Sbjct: 121 RDDNFSTNEVWSFDPITRMWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 214
                                    V  GK+H VY G+  VQ  DSLE +WRVE+Y W  
Sbjct: 181 YDSEKDVWTLLPDLLQTHDSTCNGWVIRGKMHIVYNGVSTVQVLDSLEMKWRVEDYSWL- 240

[Close]

BLAST of HG10022825 vs. TAIR 10
Match: AT3G63220.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-36
Identity = 90/298 (30.20%), Postives = 134/298 (44.97%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR----------- 60
           MSGL++G+P+AVALRC+A +P +L+P LELVSRSW+AAI S ELFR  +           
Sbjct: 1   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 60

Query: 61  --------------------------------------------------SFSADPVTGH 120
                                                             S +  PVTG 
Sbjct: 61  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 120

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D   + ++VWS+D + R W+ RA ML    MFAC VL GKI+VA               
Sbjct: 121 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 180

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 198
                                    V  GK+H ++KG+  VQ  +S++  W V++YGW  
Sbjct: 181 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 240

[Close]

BLAST of HG10022825 vs. TAIR 10
Match: AT3G63220.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-36
Identity = 90/298 (30.20%), Postives = 134/298 (44.97%), Query Frame = 0


Query: 1   MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR----------- 60
           MSGL++G+P+AVALRC+A +P +L+P LELVSRSW+AAI S ELFR  +           
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  --------------------------------------------------SFSADPVTGH 120
                                                             S +  PVTG 
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 FDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVA--------------- 180
            D   + ++VWS+D + R W+ RA ML    MFAC VL GKI+VA               
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 -------------------------VSEGKLHFVYKGMPVVQTFDSLECRWRVEEYGWFT 198
                                    V  GK+H ++KG+  VQ  +S++  W V++YGW  
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

The following BLAST results are available for this feature:

BLAST of HG10022825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150165.1	2.6e-56	43.71	F-box/kelch-repeat protein SKIP30-like [Momordica charantia]	[more]
KAG7014455.1	2.3e-52	39.62	F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022991959.1	2.3e-52	40.25	F-box/kelch-repeat protein SKIP30-like [Cucurbita maxima] >XP_022991960.1 F-box/...	[more]
KAG6575922.1	2.3e-52	39.62	F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900158.1	5.1e-52	41.69	F-box/kelch-repeat protein SKIP30-like [Benincasa hispida]	[more]

BLAST of HG10022825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1W7	4.5e-35	30.20	F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1...	[more]

BLAST of HG10022825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7Q9	1.3e-56	43.71	F-box/kelch-repeat protein SKIP30-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JW98	1.1e-52	40.25	F-box/kelch-repeat protein SKIP30-like OS=Cucurbita maxima OX=3661 GN=LOC1114884...	[more]
A0A6J1GPT2	9.4e-52	39.31	F-box/kelch-repeat protein SKIP30-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3BQL6	1.2e-51	41.38	F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo OX=3656 GN=LOC103492650 P...	[more]
A0A5A7V6S8	6.1e-51	41.07	F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of HG10022825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63220.1	3.2e-36	30.20	Galactose oxidase/kelch repeat superfamily protein	[more]
AT3G63220.2	3.2e-36	30.20	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 48..214 e-value: 8.0E-11 score: 43.5
IPR015915	Kelch-type beta propeller	SUPERFAMILY	117281	Kelch motif	coord: 61..211
None	No IPR available	PANTHER	PTHR24414:SF40	F-BOX/KELCH-REPEAT PROTEIN SKIP30	coord: 2..51
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 2..51
None	No IPR available	PANTHER	PTHR24414:SF40	F-BOX/KELCH-REPEAT PROTEIN SKIP30	coord: 105..204 coord: 56..104
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 105..204
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 56..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022825.1	HG10022825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding