HG10022782 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022782
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	PSII 6.1 kDa protein
Location	Chr05: 28227751 .. 28229005 (+)
RNA-Seq Expression	HG10022782
Synteny	HG10022782

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGTCACCTCCGCCGCCTCTGCCGCCGTGCGCACTTCTCTGGTGCAGAACCGCCGACTGCCGGCCGCTTCACCCGCCCCATTCCTTCTTGGTGAGTTCTTTTGTTGCTACTACTCTGTTTCCCCAAAAAAAAAAAAACCTTTGTTTTTCTTGTAATCAAGATTGGGTTGATGTGAGCCTTGGCTTTTTGGTTTTTACTTGCAATGATTTGTTCCTATAAATATCATGCACAATTTTTTTAAATTCTTGGTAGTTATATATTCTTTTGAAGAATTTAGTTCTTATGTTTTAAAATTCTACACAATTAGTCCGTGCGTTAGAAATTGACTCGACAAATGAAATGAGTTGATAACTAAAGACATATTTGGAAGTGAGTTTAATTTGAAATAACTAGAATCAATTTTGTCTATTTCAAAATCAGTTTGTAAGGTGTTTTTAATCATTTAAAACCAATTTTGATAATATCAAAATTATGCTTAAAAGTGTAAAATTAAAGTGATTTTAAACATAATAAAATTGATTTGAACAATTTCAAAATCACGATAGGCACTAAATTACCTTTTAATTTGGATTTTAGAAGAATGATATGATAACTTTCATTTACCTTAATTGGTTATCTTTTTTATGCACAGATTCTCTTGGAATCAAATCTTTAAAGAACCACTTAACTTAATTTGTTTAAATCAACATTACAAAAGTCAATAGTAAGCACTAAGGGCATATTTGGTACCAAAAGTACGAGTTAGGCTAACTTCAATCTTTGTTTGGTCCAAGAAGTTTACTATGGGGCTCCATGACTACTCATTAACTTCTTAGATTGTGGATCCACGACTAAACAGCTTCGCAGATTAAACAACTTCATTCTTTACCGCAAACACTCTCTAAGAATATAACTGAACATAGTTTCTATGGTGGTCACCCCTTTGATGTAGGGTTGCCTTCTTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAGCAAGTCAAGCAGCTTGGGGATGGGGGCATCGTTGATAGCTGCGGCGTGTGCTGTGACGATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTGGGGGTTTTTGGTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

mRNA sequence

ATGGCCGCCGTCACCTCCGCCGCCTCTGCCGCCGTGCGCACTTCTCTGGTGCAGAACCGCCGACTGCCGGCCGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAGCAAGTCAAGCAGCTTGGGGATGGGGGCATCGTTGATAGCTGCGGCGTGTGCTGTGACGATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTGGGGGTTTTTGGTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

Coding sequence (CDS)

ATGGCCGCCGTCACCTCCGCCGCCTCTGCCGCCGTGCGCACTTCTCTGGTGCAGAACCGCCGACTGCCGGCCGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAGCAAGTCAAGCAGCTTGGGGATGGGGGCATCGTTGATAGCTGCGGCGTGTGCTGTGACGATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTGGGGGTTTTTGGTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

Protein sequence

MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Homology

[Close]

BLAST of HG10022782 vs. NCBI nr
Match: XP_004146953.1 (photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus] >KGN44755.1 hypothetical protein Csa_015975 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 3.2e-60
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSS 60
           MAAVTSAA+A VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS
Sbjct: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60

Query: 61  SLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFY 120
           +LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFY
Sbjct: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           IVYTSTLEEDEESGLSL
Sbjct: 121 IVYTSTLEEDEESGLSL 137

[Close]

BLAST of HG10022782 vs. NCBI nr
Match: XP_008451280.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 4.2e-60
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKS 60
           MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           S+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 138
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of HG10022782 vs. NCBI nr
Match: XP_038900227.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 5.5e-60
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSS 60
           MAAVTSAA A  RTSLVQNR LPAASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS
Sbjct: 1   MAAVTSAAVATARTSLVQNRPLPAASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60

Query: 61  SLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFY 120
           +LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVFGLIWAFY
Sbjct: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           IVYTSTLEEDEESGLSL
Sbjct: 121 IVYTSTLEEDEESGLSL 137

[Close]

BLAST of HG10022782 vs. NCBI nr
Match: KAA0059706.1 (photosystem II reaction center W protein [Cucumis melo var. makuwa] >TYK26144.1 photosystem II reaction center W protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.6e-59
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKS 60
           MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           S+L MGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 138
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of HG10022782 vs. NCBI nr
Match: XP_031745255.1 (photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 5.2e-58
Identity = 128/145 (88.28%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNRRLPAASPAPFLL--------GLPSLGKKGGVRCSMEGKGN 60
           MAAVTSAA+A VRTSLVQNR LP+ASPAPFLL        GLP+LGKKGGVRCSMEGKGN
Sbjct: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGN 60

Query: 61  GEVESKSSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGV 120
           GEVE+KSS+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGV
Sbjct: 61  GEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGV 120

Query: 121 FGLIWAFYIVYTSTLEEDEESGLSL 138
           F LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 121 FALIWAFYIVYTSTLEEDEESGLSL 145

[Close]

BLAST of HG10022782 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.6e-36
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 1   MAAVTSAASAAV--RTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESK 60
           MA +T+++SA++  R SLV N R+  +S    +LGLPS+ K+  V CS+E K +    + 
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSP--ILGLPSMTKRSKVTCSIENKPSTTETTT 60

Query: 61  SSSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWA 120
           +++  MGASL+AAA A T+S+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWA
Sbjct: 61  TTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWA 120

Query: 121 FYIVYTSTLEEDEESGLSL 138
            Y VY S LEEDEESGLSL
Sbjct: 121 LYFVYASGLEEDEESGLSL 137

[Close]

BLAST of HG10022782 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-32
Identity = 86/141 (60.99%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 1   MAAVTSAAS--AAVRTSLVQNRRLPAASPAPFLLGLPSLG-KKGGVRCSMEGKGNGEVES 60
           MA+ T++AS  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     + 
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISAP---VLGLPPMGKKKGGVRCSMETK-----QG 60

Query: 61  KSSSLGMGASLIA-AACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLI 120
             S +G G S  A AA    MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLI
Sbjct: 61  NVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 120

Query: 121 WAFYIVYTSTLEEDEESGLSL 138
           W F+ VYTS+LEEDEESGLSL
Sbjct: 121 WTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of HG10022782 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.1e-22
Identity = 70/131 (53.44%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 6   SAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGG--VRCSMEGKGNGEVESKSSSLG 65
           +  SAA  TS+V   R   A P    LGLP +  +    VRC+   +        ++  G
Sbjct: 2   ATVSAAAATSVV--ARAVLAGP----LGLPQMRARRSERVRCNYSKEA---ATPAAAVKG 61

Query: 66  MGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVY 125
            GASL+A A     ++PAMALVDER+STEGTGL  GLSNNLLGWILLGVFGLIW+ Y +Y
Sbjct: 62  AGASLLAMAAT---AAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 120

Query: 126 TSTLEEDEESG 135
           TS LEEDEESG
Sbjct: 122 TSDLEEDEESG 120

[Close]

BLAST of HG10022782 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 60  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 119
           S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA 
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 120 YIVYTSTLE--EDEESGLSL 138
           + +    L   ED + GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of HG10022782 vs. ExPASy TrEMBL
Match: A0A0A0K4V6 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSS 60
           MAAVTSAA+A VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KSS
Sbjct: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60

Query: 61  SLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFY 120
           +LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFY
Sbjct: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           IVYTSTLEEDEESGLSL
Sbjct: 121 IVYTSTLEEDEESGLSL 137

[Close]

BLAST of HG10022782 vs. ExPASy TrEMBL
Match: A0A1S3BQI5 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.1e-60
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKS 60
           MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           S+LGMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 138
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of HG10022782 vs. ExPASy TrEMBL
Match: A0A5D3DRC0 (PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00650 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNR-RLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKS 60
           MAAVTSAA+AAVRTSLVQNR  LP+ASPAPFLLGLP+LGKKGGVRCSMEGKGNGEVE+KS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SSLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           S+L MGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 138
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of HG10022782 vs. ExPASy TrEMBL
Match: A0A6J1GQI7 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57
Identity = 121/137 (88.32%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSS 60
           MAAVTSAA+A VR+SLVQNR LPAASP+PFLLGLP+LGKKGGVRCSMEGK NG+VE+KSS
Sbjct: 1   MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSS 60

Query: 61  SLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFY 120
           +LGMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFG IWAFY
Sbjct: 61  TLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           I+YTSTLEEDEESGLSL
Sbjct: 121 IIYTSTLEEDEESGLSL 137

[Close]

BLAST of HG10022782 vs. ExPASy TrEMBL
Match: A0A6J1JTT6 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111488273 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MAAVTSAASAAVRTSLVQNRRLPAASPAPFLLGLPSLGKKGGVRCSMEGKGNGEVESKSS 60
           MAAVTSAA+A VR+SLVQNR  PAASPAPFLLGLP+L KKG VRCSMEGK NGEVE+KSS
Sbjct: 1   MAAVTSAAAATVRSSLVQNRPRPAASPAPFLLGLPALRKKGAVRCSMEGKANGEVENKSS 60

Query: 61  SLGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFY 120
           +LGMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFG IWAFY
Sbjct: 61  TLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           I+YTSTLEEDEESGLSL
Sbjct: 121 IIYTSTLEEDEESGLSL 137

[Close]

BLAST of HG10022782 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-33
Identity = 86/141 (60.99%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 1   MAAVTSAAS--AAVRTSLVQNRRLPAASPAPFLLGLPSLG-KKGGVRCSMEGKGNGEVES 60
           MA+ T++AS  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     + 
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISAP---VLGLPPMGKKKGGVRCSMETK-----QG 60

Query: 61  KSSSLGMGASLIA-AACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLI 120
             S +G G S  A AA    MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLI
Sbjct: 61  NVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 120

Query: 121 WAFYIVYTSTLEEDEESGLSL 138
           W F+ VYTS+LEEDEESGLSL
Sbjct: 121 WTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of HG10022782 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146953.1	3.2e-60	93.43	photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sati...	[more]
XP_008451280.1	4.2e-60	94.20	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis...	[more]
XP_038900227.1	5.5e-60	93.43	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
KAA0059706.1	3.6e-59	93.48	photosystem II reaction center W protein [Cucumis melo var. makuwa] >TYK26144.1 ...	[more]
XP_031745255.1	5.2e-58	88.28	photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sati...	[more]

BLAST of HG10022782 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41387	7.6e-36	61.87	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q39194	3.0e-32	60.99	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q5ZBY9	8.1e-22	53.44	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	5.5e-10	41.25	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of HG10022782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4V6	1.6e-60	93.43	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1	[more]
A0A1S3BQI5	2.1e-60	94.20	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1	[more]
A0A5D3DRC0	1.7e-59	93.48	PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111...	[more]
A0A6J1GQI7	2.8e-57	88.32	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1	[more]
A0A6J1JTT6	1.2e-55	87.59	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111488273 PE=3 SV=1	[more]

BLAST of HG10022782 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	2.1e-33	60.99	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 1..137 e-value: 1.2E-54 score: 183.9
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 5..137
None	No IPR available	PANTHER	PTHR34552:SF9	PHOTOSYSTEM II REACTION CENTER W	coord: 5..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022782.1	HG10022782.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast