HG10022740 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022740
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	mediator of RNA polymerase II transcription subunit 19a-like
Location	Chr05: 27796102 .. 27799104 (-)
RNA-Seq Expression	HG10022740
Synteny	HG10022740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGAAGATAAGAAATTTGGCCGAGGTAAATGTTGATATAGTCAATTTAGTCCCTTCTCCCTTGTGCACTGGCATGTTTAAAGAGTGAGACATAGCTTGGTATATATACATTGATGCTTTTACGTTTAGAAATCTTTAGATTCTGATGATACTATATTATCGTAAATGAGCATGCCTGTTTTGGGTGAAAACATGCCCTTGGTTTATCTATTATGTACCTGGGAACTTAATGATTAATATTTTATTTGGTATGTAAGGATCTCTTATGTGTATCTCTTGACTATTTATGTAGAAATTTATTTTCCTGTGTTTTCTCTTTTAGTTTCTATGAATGTGGTTAGTTGAGCTAGAGCATCTTATTCTAATACAATTTTTCCAAGCCATGCAGAGGGCTGTAGGATTATGGGTTGAAAGATGTAGTAAAACAAAGTTTTGCTTGATCTGGAATTGTGGTAGGAAATTTATAGTTCAAGTTTAGAGCTGAATTAAACCACTTGAGCGTTTAGAAGAGGTTTTACCTTTAGAAGAGGCTTAAGGGTTTACCTATGTTTTTTGATACTTTTTTCTTCCAATGTACAAGAATTATTTATTTATTTAATGTAATGCAAATCAGGGGATTTTGAAATAGCAATTTTGGTGTACTTAAAAATTTTGATATTTTGAATGGGATACTATTATATCTTTGATACTTTGGCTACCACTTTACTGATGGATTTCACAGAGATTGCATAATGAAATTTAGCCCATACAAATCATTTGACTCTTTTTGTTGCAATAATATAGGAGCAACTTTAATTTATCAGATGTCCTCAAAGGGACATATAGGAAGTGAGCTATGATGACTTGACATTTCTTTATTTAGTCTCTCTTTGGCTTGAGCAATGAAAATTGGCCCACGTCTTACTTAGGTCTTCCTATGATTGGGAGCTCAAAGTGTGACCTTCTTACTTCAATTATTGAAAGGACTTTCTGTAATTGAGAACTTGAAGTGTCTTGAATTTTGGATTCCAAGTATTGAAAAAACATTGCGAGCTTTAGTATTGGAGGAGATTGGTCCTCTCATTCATGCCTTCTTGCCAAATATTCTGTGAGACAGAGTGTTCAGTGCAGGAAGTGAATGAGTTCTGTACCCCACTGCAAGCTAAACTCTAAACAGTTTTCCCCTAAAATTACATATGGTCTATGCCATGCCTTGAAAATTGCATTTTAAGATCTTCAGGATTTCTGAAGTGAAAGAATTATTCACGGTTTTCTATTTACTTTAAAGCAATTTGGTCTTTCTTTGCAATGGTTCAATGTTACTTTATAACAACAACAACAATATTCCAAACCAAAAACAACAACAACAATAATAAAAATAATAATATTTTTTTTTCTCTTTACAATTCTTTCTTCACTTTTGTTTATTTTTTTGAATATTATTACTGTAGCTCCTTTTGTCTTTCCATGTTGTACATTTTAATTCTTTAATTGATTTTTTCTAATCAGTTAGCTTTTTCTTTCTTTTGTTAGTATATGTCTTTATTGCTTTTGTTGCAATGTAATTGAAAGGAACATGGAAGTACAAGATATAGCTGTTTTCTGATCCATCTTGTTCATTTTCTATCTGTATATATTATCTTGTCACCTGAATTTTTGGTATATTTTTATTTGTACCTTTAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCACTTCCACTGTCAATTTCGGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGAGAAGGGATGCAGTTGAATCAACTCATACAGACTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTTGACCAAGATACTCTCATAGAAGCCTTCCAGCTGAGGGAAACTGGTCCTGTTGATCTGCCTTCTGTAAGAAATCTATTATTAAAATTGTTAAAATGAGCCACTTTTTTCAGCTTTCTTCCATCAGCTGGAATTTAGATGTCACCAAGGCAACGGGTCTGATTATCAGCATTTCTCATCCTGATTCTTTTCGCTGCAAGTGATGGTCCATTTCTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGACAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCCCATCAAGATTCTGGTGCTGATCATTCTAAGAAGCATCATGAAAAGGTTGGAAAACCTTTACTCTTTTCCAGCTCCTTTGTAAATACCAACTACCAAGATTTGATAACAATGGGATGGTTCAGGAGTAGATTGTCATTGACATTAACATTATGGATTGTTTAGTGTATCCCAATCCCTAGTTTGTTGTTTCAGTTACAAGATTATCACTTCTTGAAGTGTATCCCTTTCACTGAATTTTGTTCATTTGACCTTAGATTATCAAACCCTTAGCTTGCCTTGAGGGCTGGGAATTGAAAAGTTAATTGATCTGTACCATATTTTCTCTACTAAAAATTAAGGATTAAGTAGTCTTTTGGTGTTTTACTACCAAACTAATATACAATTGTTGTGCATGTAGCCGAAATGAGCTTGTTCTTAATCTCTAACTTCACTTAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAGGTAATACGAAGTCCAGTTTTTTTAGCTCTAGATTGCTTGGTTACTGCAAAGAACAATTATCCGGGTCAACTTTTATCTTCTTAATCCATGTTTTGACTTTTCAATTGATTGTTTTCCAACTAAAAGTCTTCTGCATTTAATTTCTGCAGCATAAGACCTCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

mRNA sequence

ATGGAATCTGAAGATAAGAAATTTGGCCGAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCACTTCCACTGTCAATTTCGGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGAGAAGGGATGCAGTTGAATCAACTCATACAGACTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTTGACCAAGATACTCTCATAGAAGCCTTCCAGCTGAGGGAAACTGGTCCTGTTGATCTGCCTTCTGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGACAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCCCATCAAGATTCTGGTGCTGATCATTCTAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAATTTGGCCGAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCACTTCCACTGTCAATTTCGGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGAGAAGGGATGCAGTTGAATCAACTCATACAGACTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTTGACCAAGATACTCTCATAGAAGCCTTCCAGCTGAGGGAAACTGGTCCTGTTGATCTGCCTTCTGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGACAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCCCATCAAGATTCTGGTGCTGATCATTCTAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

Protein sequence

MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLIQTSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSKSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG

Homology

[Close]

BLAST of HG10022740 vs. NCBI nr
Match: XP_038898851.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 1.0e-108
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME+EDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MEAEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDVLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKSAH DSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSAHHDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. NCBI nr
Match: XP_016900359.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 1.8e-108
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. NCBI nr
Match: XP_031744806.1 (mediator of RNA polymerase II transcription subunit 19a [Cucumis sativus] >XP_031744807.1 mediator of RNA polymerase II transcription subunit 19a [Cucumis sativus])

HSP 1 Score: 401.4 bits (1030), Expect = 5.1e-108
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. NCBI nr
Match: XP_022143549.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143550.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143551.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143552.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143554.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 210/219 (95.89%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDK+RKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKK+DKSAH +SGADHSKKH
Sbjct: 121 SESKDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. NCBI nr
Match: XP_022959852.1 (mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita moschata] >KAG6593062.1 Mediator of RNA polymerase II transcription subunit 19a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 395.2 bits (1014), Expect = 3.7e-106
Identity = 209/219 (95.43%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQT-SYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ  SYPRETNARIQPFDQD LIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKK+KHK +KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. ExPASy Swiss-Prot
Match: Q9FMP0 (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 167/223 (74.89%), Postives = 193/223 (86.55%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQT-SYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PV+LP AEKG PTIP KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK+SK++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

[Close]

BLAST of HG10022740 vs. ExPASy Swiss-Prot
Match: Q6NQD9 (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana OX=3702 GN=MED19B PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.7e-67
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQTS--YPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKS 120
           GEGMQL+QLI  +    R+TNARIQPF  D L EAF+L +T PV+LP AEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 215
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of HG10022740 vs. ExPASy TrEMBL
Match: A0A1S4DWJ4 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=3656 GN=LOC103489709 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 8.5e-109
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. ExPASy TrEMBL
Match: A0A6J1CP39 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013422 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.1e-107
Identity = 210/219 (95.89%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDK+RKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKK+DKSAH +SGADHSKKH
Sbjct: 121 SESKDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. ExPASy TrEMBL
Match: A0A0A0K716 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQ-TSYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ TSYPRETNARIQPFDQD LIEAFQLRETGPVDLPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 216
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of HG10022740 vs. ExPASy TrEMBL
Match: A0A6J1H5Q1 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita moschata OX=3662 GN=LOC111460791 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.8e-106
Identity = 209/219 (95.43%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQT-SYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ  SYPRETNARIQPFDQD LIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKK+KHK +KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. ExPASy TrEMBL
Match: A0A6J1KVN1 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita maxima OX=3661 GN=LOC111498006 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.1e-106
Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQT-SYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ+ SYPRETNARIQPFDQD LIEAFQLRETGPV+LP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            ESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH
Sbjct: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           HEKKRKHDGEDDINDIHRHKK+KHK +KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 219

[Close]

BLAST of HG10022740 vs. TAIR 10
Match: AT5G12230.1 (MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 304.3 bits (778), Expect = 7.9e-83
Identity = 167/223 (74.89%), Postives = 193/223 (86.55%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQT-SYPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PV+LP AEKG PTIP KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK+SK++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

[Close]

BLAST of HG10022740 vs. TAIR 10
Match: AT5G19480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-68
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQTS--YPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKS 120
           GEGMQL+QLI  +    R+TNARIQPF  D L EAF+L +T PV+LP AEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 215
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of HG10022740 vs. TAIR 10
Match: AT5G19480.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 15754 Blast hits to 7644 proteins in 441 species: Archae - 6; Bacteria - 451; Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses - 38; Other Eukaryotes - 4987 (source: NCBI BLink). )

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-68
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQTS--YPRETNARIQPFDQDTLIEAFQLRETGPVDLPSAEKGVPTIPGKS 120
           GEGMQL+QLI  +    R+TNARIQPF  D L EAF+L +T PV+LP AEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 215
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

The following BLAST results are available for this feature:

BLAST of HG10022740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898851.1	1.0e-108	97.72	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beninca...	[more]
XP_016900359.1	1.8e-108	97.72	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
XP_031744806.1	5.1e-108	97.26	mediator of RNA polymerase II transcription subunit 19a [Cucumis sativus] >XP_03...	[more]
XP_022143549.1	1.3e-106	95.89	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordi...	[more]
XP_022959852.1	3.7e-106	95.43	mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita moschata...	[more]

BLAST of HG10022740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMP0	1.1e-81	74.89	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
Q6NQD9	2.7e-67	67.13	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of HG10022740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWJ4	8.5e-109	97.72	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=...	[more]
A0A6J1CP39	6.1e-107	95.89	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momor...	[more]
A0A0A0K716	1.4e-106	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1	[more]
A0A6J1H5Q1	1.8e-106	95.43	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita moscha...	[more]
A0A6J1KVN1	5.1e-106	94.52	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita maxima...	[more]

BLAST of HG10022740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12230.1	7.9e-83	74.89	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19...	[more]
AT5G19480.1	1.9e-68	67.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G19480.2	1.9e-68	67.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..218
None	No IPR available	PANTHER	PTHR22536:SF4	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 19A-LIKE ISOFORM X1	coord: 1..217
IPR019403	Mediator complex, subunit Med19, metazoa	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 1..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022740.1	HG10022740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006777	Mo-molybdopterin cofactor biosynthetic process
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0019008	molybdopterin synthase complex
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0061798	GTP 3',8'-cyclase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003712	transcription coregulator activity