HG10022636 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022636
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 26492581 .. 26492862 (-)
RNA-Seq Expression	HG10022636
Synteny	HG10022636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCATTTTTTGTTTTTTTGGATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGGGCTTCAGCTCCGAACTCTGCGGCGGTTGCAGGAGAGGTTCGAGGTCGAGATTTTGTTGGATGGAAGACGGTGGAGGAGGCGGAGAGAAGGCGGTGGCGGTCGGGGGCCATGGAAGGAGGAGGAGGAGAGGAAATGAGGGTAAGAAGGAGGAGGAAGGAGAAGAAAAGAGAGAGAAAGAGAATGGAAGATTTTGGTGGGAGAAAATGAGATGA

mRNA sequence

ATGTTTCATTTTTTGTTTTTTTGGATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGGGCTTCAGCTCCGAACTCTGCGGCGGTTGCAGGAGAGGTTCGAGGTCGAGATTTTGTTGGATGGAAGACGGTGGAGGAGGCGGAGAGAAGGCGGTGGCGGTCGGGGGCCATGGAAGGAGGAGGAGGAGAGGAAATGAGGGTAAGAAGGAGGAGGAAGGAGAAGAAAAGAGAGAGAAAGAGAATGGAAGATTTTGGTGGGAGAAAATGAGATGA

Coding sequence (CDS)

ATGTTTCATTTTTTGTTTTTTTGGATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGGGCTTCAGCTCCGAACTCTGCGGCGGTTGCAGGAGAGGTTCGAGGTCGAGATTTTGTTGGATGGAAGACGGTGGAGGAGGCGGAGAGAAGGCGGTGGCGGTCGGGGGCCATGGAAGGAGGAGGAGGAGAGGAAATGAGGGTAAGAAGGAGGAGGAAGGAGAAGAAAAGAGAGAGAAAGAGAATGGAAGATTTTGGTGGGAGAAAATGAGATGA

Protein sequence

MFHFLFFWIPLVGYRVWTTGNFMGFSSELCGGCRRGSRSRFCWMEDGGGGGEKAVAVGGHGRRRRRGNEGKKEEEGEEKREKENGRFWWEKMR

Homology

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BLAST of HG10022636 vs. NCBI nr
Match: KAG6575977.1 (hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 62/90 (68.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MFHFLFFWIPLVGYRVWTTGNFMGFSSELCGGCRRGSRSRFCWMEDGGGGG-EKAVAVGG 60
          +F F F+ IPLVGYRVWTTGNFM F SEL G   RGSR RF  ME GGGGG E AV VG 
Sbjct: 3  LFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGVGR 62

Query: 61 HGRRR---RRGNEGKKEEEGEEKREKENGR 87
          HG RR   RRGNEG KEEEG+EK+EKE  R
Sbjct: 63 HGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92

The following BLAST results are available for this feature:

BLAST of HG10022636 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575977.1	1.5e-16	68.89	hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10022636 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022636 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022636 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022636.1	HG10022636.1	mRNA