HG10022619 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022619
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGamma-thionin family protein
LocationChr05: 26329198 .. 26330002 (+)
RNA-Seq ExpressionHG10022619
SyntenyHG10022619
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCCATTGCCAATCGATCTTCTTTCCTCTGCATTGTCTGCATTGCTTTCCTTCTCATTGCTGGTAATGGCTTTAATTACACTCTTATTATACTCACATTTATACTTTTCTTTAAAATTACTCTTTCATCTATAATTTTTGTTGCTATTTAATTAAGAAGAAAAAAGTCATCAAACCAAATATTCATAGAAAGCAATTAATATCATTAACATGGAAAAGATTTTGGATTTTAGAAATTTGTATCCAATAATCTTGGGATTATTTTGAGAAAATGAAAAACAAGAATATCAAAAGATGCCACAACCGGTATATCGAAAAAAAAACAAGAGTGCAACGTAGGTTAAAATGTCAGAAGTGGGATTTAAACCCACGCCCTCTAACGAGGACCAAAACTTGAGTCTAGCACCTTAGACCACTCAGCCATCCTGACTTATTGGTGAAATTTAACTTTTCAAGTGTTTAATTTTAACAATAAGTCATTTTGAAAATACCGAAGTGTTCGAAAACCATTCAAAATAGGAAACGTATTTTTAACCGTTTTTATCAAAAAGGTATAAATAAAAATGACTTTTTTAAAAAACATTTTTTTCTCTAGTCAATCCAAACGGATCTTAAATTTTAGTGATTGTTGGTGAAATTGCAGGACCAGGGCCAGCATGTGGGCAAAATGGGGCATGTTTGGGAGATTGCTCAGATTTCCCAAACTGCAATAAAGCTTGCATCATTGAAGGATATGGGGCTGGTGGTTCATGCACTGGAAATCCTCCATCCCTTTCTTGCTGCTGCGACAGTTCCTGA

mRNA sequence

ATGGCTTCTTCCATTGCCAATCGATCTTCTTTCCTCTGCATTGTCTGCATTGCTTTCCTTCTCATTGCTGGACCAGGGCCAGCATGTGGGCAAAATGGGGCATGTTTGGGAGATTGCTCAGATTTCCCAAACTGCAATAAAGCTTGCATCATTGAAGGATATGGGGCTGGTGGTTCATGCACTGGAAATCCTCCATCCCTTTCTTGCTGCTGCGACAGTTCCTGA

Coding sequence (CDS)

ATGGCTTCTTCCATTGCCAATCGATCTTCTTTCCTCTGCATTGTCTGCATTGCTTTCCTTCTCATTGCTGGACCAGGGCCAGCATGTGGGCAAAATGGGGCATGTTTGGGAGATTGCTCAGATTTCCCAAACTGCAATAAAGCTTGCATCATTGAAGGATATGGGGCTGGTGGTTCATGCACTGGAAATCCTCCATCCCTTTCTTGCTGCTGCGACAGTTCCTGA

Protein sequence

MASSIANRSSFLCIVCIAFLLIAGPGPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSCTGNPPSLSCCCDSS
Homology
BLAST of HG10022619 vs. NCBI nr
Match: KAG6575964.1 (hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MASSIANRSSFLCIVCIAFLLIAG----PGPACGQNGACLGDCSDFPNCNKACIIEGYGA 60
          MASS A RSSF  ++C+AF+LIAG    PG A      CLG CS  PNC  ACI  G+  
Sbjct: 1  MASSFAMRSSFSFLLCMAFVLIAGLGTRPGSAINLAVVCLGPCSKIPNCENACINAGHAK 60

Query: 61 GGSCTG---NPPSLSCCCDSS 75
          GG C G   +PP  SCCC+S+
Sbjct: 61 GGECLGFFKDPP--SCCCNST 79

BLAST of HG10022619 vs. NCBI nr
Match: BBH10080.1 (Gamma-thionin family protein [Prunus dulcis])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 1  MASSIANRSSFLCIVCIAFLLIAGPGPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSC 60
          ++ ++ N   FL   CIA LL +GP  A      CLG CSDF +CN ACI + +  GG+C
Sbjct: 12 LSPAVQNLVGFL---CIALLLASGPAGAIRAPVVCLGPCSDFKDCNGACIAKQHPQGGAC 71

Query: 61 TG---NPPSLSCCCDSS 75
           G    PP  +CCC+++
Sbjct: 72 MGFGTEPP--TCCCNTN 83

BLAST of HG10022619 vs. NCBI nr
Match: PIM97201.1 (hypothetical protein CDL12_30331 [Handroanthus impetiginosus])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 3  SSIANRSSFLCIVCIAFLLIAGP-GPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSCT 62
          +S A    F+ I+C+  +LI+G       +   C+G CSDF +CNKACI +GY  GG C 
Sbjct: 2  ASCAQNDYFMGILCLILVLISGQVVKGIKEPFVCIGKCSDFEDCNKACISKGYQLGGYCY 61

Query: 63 G-NPPSLSCCC 72
          G +   L+CCC
Sbjct: 62 GFSVLDLACCC 72

BLAST of HG10022619 vs. NCBI nr
Match: CAB4291337.1 (unnamed protein product [Prunus armeniaca] >CAB4321655.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 1  MASSIANRSSFLCIVCIAFLLIAGPGPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSC 60
          ++S++ N   FLCI  +    +AGP  A      CLG CS+F +CN ACI + +  GG+C
Sbjct: 6  LSSAVQNLVGFLCI-ALLLASVAGPVGAIRAPVVCLGPCSEFKDCNGACIAKQHPKGGAC 65

Query: 61 TG---NPPSLSCCCDSS 75
           G    PP  +CCC+++
Sbjct: 66 MGFGTEPP--TCCCNTN 79

BLAST of HG10022619 vs. ExPASy TrEMBL
Match: A0A4Y1S039 (Gamma-thionin family protein OS=Prunus dulcis OX=3755 GN=Prudu_022764 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 1  MASSIANRSSFLCIVCIAFLLIAGPGPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSC 60
          ++ ++ N   FL   CIA LL +GP  A      CLG CSDF +CN ACI + +  GG+C
Sbjct: 12 LSPAVQNLVGFL---CIALLLASGPAGAIRAPVVCLGPCSDFKDCNGACIAKQHPQGGAC 71

Query: 61 TG---NPPSLSCCCDSS 75
           G    PP  +CCC+++
Sbjct: 72 MGFGTEPP--TCCCNTN 83

BLAST of HG10022619 vs. ExPASy TrEMBL
Match: A0A2G9FW97 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30331 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-05
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 3  SSIANRSSFLCIVCIAFLLIAGP-GPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSCT 62
          +S A    F+ I+C+  +LI+G       +   C+G CSDF +CNKACI +GY  GG C 
Sbjct: 2  ASCAQNDYFMGILCLILVLISGQVVKGIKEPFVCIGKCSDFEDCNKACISKGYQLGGYCY 61

Query: 63 G-NPPSLSCCC 72
          G +   L+CCC
Sbjct: 62 GFSVLDLACCC 72

BLAST of HG10022619 vs. ExPASy TrEMBL
Match: A0A6J5VUM4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51612 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 1  MASSIANRSSFLCIVCIAFLLIAGPGPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSC 60
          ++S++ N   FLCI  +    +AGP  A      CLG CS+F +CN ACI + +  GG+C
Sbjct: 6  LSSAVQNLVGFLCI-ALLLASVAGPVGAIRAPVVCLGPCSEFKDCNGACIAKQHPKGGAC 65

Query: 61 TG---NPPSLSCCCDSS 75
           G    PP  +CCC+++
Sbjct: 66 MGFGTEPP--TCCCNTN 79

BLAST of HG10022619 vs. ExPASy TrEMBL
Match: A0A061DMT7 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003072 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-04
Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0

Query: 1  MASSIANRSSFLCIVCIAFLLIAGPGPACGQNGACLGDCSDFPNCNKACIIEGYGAGGSC 60
          +ASS+      LC+V + +  +A P  A      CLG CS  PNCN AC+ +G+  GG C
Sbjct: 6  VASSVQQFLGMLCLV-LLWTSVARPAAAL-YTPTCLGPCSAVPNCNDACVTKGFPKGGVC 65

Query: 61 TG-NPPSLSCCCDS 74
           G     L+CCC S
Sbjct: 66 LGFTKTDLACCCTS 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575964.11.4e-0951.85hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sorori... [more]
BBH10080.11.0e-0441.56Gamma-thionin family protein [Prunus dulcis][more]
PIM97201.11.8e-0442.25hypothetical protein CDL12_30331 [Handroanthus impetiginosus][more]
CAB4291337.18.9e-0438.96unnamed protein product [Prunus armeniaca] >CAB4321655.1 unnamed protein product... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4Y1S0395.1e-0541.56Gamma-thionin family protein OS=Prunus dulcis OX=3755 GN=Prudu_022764 PE=4 SV=1[more]
A0A2G9FW978.6e-0542.25Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30331 P... [more]
A0A6J5VUM44.3e-0438.96Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51612 PE=4 S... [more]
A0A061DMT77.3e-0440.54Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003072 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022619.1HG10022619.1mRNA