HG10022607 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022607
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionS-protein homolog
LocationChr05: 26155396 .. 26155587 (-)
RNA-Seq ExpressionHG10022607
SyntenyHG10022607
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGTACTTCTGTCATATTTGGTGGATGGAAGAACACATCACGTATCAAGTGTATTCGCACGCCAACGATTTTGAGAGGACACTATGTGGAAATGGACATTGCAGATGGAAAGCAGATCCTCAGGGAATTTCTAATTACAATGTTAATAAAGGTTTCTATGACTTGCAATTTAAATGGGAACATTGA

mRNA sequence

ATGATGTTGTACTTCTGTCATATTTGGTGGATGGAAGAACACATCACGTATCAAGTGTATTCGCACGCCAACGATTTTGAGAGGACACTATGTGGAAATGGACATTGCAGATGGAAAGCAGATCCTCAGGGAATTTCTAATTACAATGTTAATAAAGGTTTCTATGACTTGCAATTTAAATGGGAACATTGA

Coding sequence (CDS)

ATGATGTTGTACTTCTGTCATATTTGGTGGATGGAAGAACACATCACGTATCAAGTGTATTCGCACGCCAACGATTTTGAGAGGACACTATGTGGAAATGGACATTGCAGATGGAAAGCAGATCCTCAGGGAATTTCTAATTACAATGTTAATAAAGGTTTCTATGACTTGCAATTTAAATGGGAACATTGA

Protein sequence

MMLYFCHIWWMEEHITYQVYSHANDFERTLCGNGHCRWKADPQGISNYNVNKGFYDLQFKWEH
Homology
BLAST of HG10022607 vs. NCBI nr
Match: KAA0050599.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 8.6e-16
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 3   LYFCHIWWMEEHITYQVYSHANDFERTLCGNGHCRWKADPQGISNYNVNKGFYDLQFKWE 62
           L++CH+WW+   ITY+ Y H NDFE ++CG+GHCRWKADPQGIS Y V++  Y L + WE
Sbjct: 80  LFYCHVWWIGGQITYKAYWHENDFELSVCGDGHCRWKADPQGISCYFVDQKRYALTYLWE 139

Query: 63  H 64
           H
Sbjct: 140 H 140

BLAST of HG10022607 vs. NCBI nr
Match: XP_031745088.1 (S-protein homolog 3-like [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 3   LYFCHIWWMEEHITYQVYSHANDFERTLCGNGHCRWKADPQGISNYNVNK 53
           L++CH+WW+  HITY+ Y H NDFE + CG+GHCRWKADPQG+S+Y V++
Sbjct: 80  LFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQGVSSYFVDQ 129

BLAST of HG10022607 vs. NCBI nr
Match: KAE8646226.1 (hypothetical protein Csa_016670 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 3   LYFCHIWWMEEHITYQVYSHANDFERTLCGNGHCRWKADPQGISNYNVNK 53
           L++CH+WW+  HITY+ Y H NDFE + CG+GHCRWKADPQG+S+Y V++
Sbjct: 80  LFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQGVSSYFVDQ 129

BLAST of HG10022607 vs. ExPASy TrEMBL
Match: A0A0A0K4G8 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_7G333910 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-17
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 3   LYFCHIWWMEEHITYQVYSHANDFERTLCGNGHCRWKADPQGISNYNVNKGFYDLQFKWE 62
           L++CH+WW+  HITY+ Y H NDFE + CG+GHCRWKADPQG+S+Y V++  Y L + W+
Sbjct: 80  LFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQGVSSYFVDQKRYSLTYLWQ 139

Query: 63  H 64
           H
Sbjct: 140 H 140

BLAST of HG10022607 vs. ExPASy TrEMBL
Match: A0A5A7UAS5 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001420 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-16
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 3   LYFCHIWWMEEHITYQVYSHANDFERTLCGNGHCRWKADPQGISNYNVNKGFYDLQFKWE 62
           L++CH+WW+   ITY+ Y H NDFE ++CG+GHCRWKADPQGIS Y V++  Y L + WE
Sbjct: 80  LFYCHVWWIGGQITYKAYWHENDFELSVCGDGHCRWKADPQGISCYFVDQKRYALTYLWE 139

Query: 63  H 64
           H
Sbjct: 140 H 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050599.18.6e-1659.02pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like... [more]
XP_031745088.11.8e-1362.00S-protein homolog 3-like [Cucumis sativus][more]
KAE8646226.11.8e-1362.00hypothetical protein Csa_016670 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4G86.4e-1757.38S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_7G333910 PE=3 SV=1[more]
A0A5A7UAS54.2e-1659.02S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G0... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 3..61
e-value: 6.1E-7
score: 29.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022607.1HG10022607.1mRNA