HG10022555 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022555
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAT-rich interactive domain-containing protein 1-like isoform X2
LocationChr05: 25447765 .. 25447976 (-)
RNA-Seq ExpressionHG10022555
SyntenyHG10022555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCATTGAGTCATGTCCTCCTAGAAGGAGGGCAGATCTTGTTAGCTTCTACTATAATATCTTTCTTTTGTGTTGCAGAGGATGGGTTACGCCAGATGAAATCGATAGTGACAAGGAATCAGAATCTGGAACTGCAACTAATAGATTAGGAAACGAAGTGCATAATTCACCTGGCTCCAATTTCTACTCTCCTAAGAAGCCACGATAA

mRNA sequence

ATGATCTCATTGAGTCATGTCCTCCTAGAAGGAGGGCAGATCTTAGGATGGGTTACGCCAGATGAAATCGATAGTGACAAGGAATCAGAATCTGGAACTGCAACTAATAGATTAGGAAACGAAGTGCATAATTCACCTGGCTCCAATTTCTACTCTCCTAAGAAGCCACGATAA

Coding sequence (CDS)

ATGATCTCATTGAGTCATGTCCTCCTAGAAGGAGGGCAGATCTTAGGATGGGTTACGCCAGATGAAATCGATAGTGACAAGGAATCAGAATCTGGAACTGCAACTAATAGATTAGGAAACGAAGTGCATAATTCACCTGGCTCCAATTTCTACTCTCCTAAGAAGCCACGATAA

Protein sequence

MISLSHVLLEGGQILGWVTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR
Homology
[Close]
BLAST of HG10022555 vs. NCBI nr
Match: TYK03023.1 (AT-rich interactive domain-containing protein 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 4.9e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ESESGTAT R GNEVHNSPGS FYSPKKPR
Sbjct: 208 VTPDEIDSDEESESGTATIRFGNEVHNSPGSIFYSPKKPR 247

[Close]
BLAST of HG10022555 vs. NCBI nr
Match: XP_008458204.1 (PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cucumis melo] >XP_008458205.1 PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cucumis melo] >XP_016902234.1 PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 4.9e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ESESGTAT R GNEVHNSPGS FYSPKKPR
Sbjct: 356 VTPDEIDSDEESESGTATIRFGNEVHNSPGSIFYSPKKPR 395

[Close]
BLAST of HG10022555 vs. NCBI nr
Match: XP_008458206.1 (PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 4.9e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ESESGTAT R GNEVHNSPGS FYSPKKPR
Sbjct: 330 VTPDEIDSDEESESGTATIRFGNEVHNSPGSIFYSPKKPR 369

[Close]
BLAST of HG10022555 vs. NCBI nr
Match: XP_038875899.1 (AT-rich interactive domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-09
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ES+SG ATN  GNEVHNSPGS FYSPKKPR
Sbjct: 355 VTPDEIDSDEESDSGIATNGFGNEVHNSPGSIFYSPKKPR 394

[Close]
BLAST of HG10022555 vs. NCBI nr
Match: XP_022157705.1 (AT-rich interactive domain-containing protein 1-like [Momordica charantia] >XP_022157706.1 AT-rich interactive domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD ESESG ATN  G+EVHNSPGS FYSPKKPR
Sbjct: 355 VTPDEIDSDDESESGLATNGFGHEVHNSPGSIFYSPKKPR 394

[Close]
BLAST of HG10022555 vs. ExPASy TrEMBL
Match: A0A1S3C8K0 (AT-rich interactive domain-containing protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497705 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ESESGTAT R GNEVHNSPGS FYSPKKPR
Sbjct: 356 VTPDEIDSDEESESGTATIRFGNEVHNSPGSIFYSPKKPR 395

[Close]
BLAST of HG10022555 vs. ExPASy TrEMBL
Match: A0A5D3BTN4 (AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001180 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ESESGTAT R GNEVHNSPGS FYSPKKPR
Sbjct: 208 VTPDEIDSDEESESGTATIRFGNEVHNSPGSIFYSPKKPR 247

[Close]
BLAST of HG10022555 vs. ExPASy TrEMBL
Match: A0A1S3C7F8 (AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497705 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD+ESESGTAT R GNEVHNSPGS FYSPKKPR
Sbjct: 330 VTPDEIDSDEESESGTATIRFGNEVHNSPGSIFYSPKKPR 369

[Close]
BLAST of HG10022555 vs. ExPASy TrEMBL
Match: A0A6J1DYZ8 (AT-rich interactive domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111024359 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTPDEIDSD ESESG ATN  G+EVHNSPGS FYSPKKPR
Sbjct: 355 VTPDEIDSDDESESGLATNGFGHEVHNSPGSIFYSPKKPR 394

[Close]
BLAST of HG10022555 vs. ExPASy TrEMBL
Match: A0A0A0KD11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G004620 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 18  VTPDEIDSDKESESGTATNRLGNEVHNSPGSNFYSPKKPR 58
           VTP+EI+SD+ESESGTATN  GNEVHNS GS FYSPKKPR
Sbjct: 356 VTPNEINSDEESESGTATNGFGNEVHNSSGSIFYSPKKPR 395

The following BLAST results are available for this feature:
BLAST of HG10022555 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03023.14.9e-1090.00AT-rich interactive domain-containing protein 1-like isoform X2 [Cucumis melo va... [more]
XP_008458204.14.9e-1090.00PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cucu... [more]
XP_008458206.14.9e-1090.00PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X2 [Cucu... [more]
XP_038875899.13.2e-0985.00AT-rich interactive domain-containing protein 1-like [Benincasa hispida][more]
XP_022157705.19.2e-0985.00AT-rich interactive domain-containing protein 1-like [Momordica charantia] >XP_0... [more]
BLAST of HG10022555 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10022555 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C8K02.4e-1090.00AT-rich interactive domain-containing protein 1-like isoform X1 OS=Cucumis melo ... [more]
A0A5D3BTN42.4e-1090.00AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucumis melo ... [more]
A0A1S3C7F82.4e-1090.00AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucumis melo ... [more]
A0A6J1DYZ84.5e-0985.00AT-rich interactive domain-containing protein 1-like OS=Momordica charantia OX=3... [more]
A0A0A0KD111.7e-0882.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G004620 PE=4 SV=1[more]
BLAST of HG10022555 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022555.1HG10022555.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus