HG10022553 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022553
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TonB-dependent heme receptor A
Location	Chr05: 25434971 .. 25435156 (-)
RNA-Seq Expression	HG10022553
Synteny	HG10022553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGACATGCCCACGGACATGACGAACCGTATTATTTGCACGCAAAGCATATGTACAACTTGGATAGGATGAAAAATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTTAGCATTGGCGTGGGTGTTCCAATCTACGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

mRNA sequence

ATGGGAGGACATGCCCACGGACATGACGAACCGTATTATTTGCACGCAAAGCATATGTACAACTTGGATAGGATGAAAAATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTTAGCATTGGCGTGGGTGTTCCAATCTACGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

Coding sequence (CDS)

ATGGGAGGACATGCCCACGGACATGACGAACCGTATTATTTGCACGCAAAGCATATGTACAACTTGGATAGGATGAAAAATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTTAGCATTGGCGTGGGTGTTCCAATCTACGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

Protein sequence

MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTASG

Homology

[Close]

BLAST of HG10022553 vs. NCBI nr
Match: XP_011659116.1 (uncharacterized protein LOC101215354 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-25
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGV VPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVAVPIYAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. NCBI nr
Match: XP_022976651.1 (uncharacterized protein LOC111476990 [Cucurbita maxima] >XP_022976652.1 uncharacterized protein LOC111476990 [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI+AV+FQQKKT S
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIFAVVFQQKKTVS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. NCBI nr
Match: XP_004138643.2 (uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63316.2 hypothetical protein Csa_022386 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. NCBI nr
Match: XP_038899385.1 (uncharacterized protein LOC120086696 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGV VPIYAVIFQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPIYAVIFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. NCBI nr
Match: XP_022143637.1 (uncharacterized protein LOC111013498 [Momordica charantia] >XP_022143638.1 uncharacterized protein LOC111013498 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGV VPIYAVIFQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPIYAVIFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. ExPASy TrEMBL
Match: A0A6J1IGC8 (uncharacterized protein LOC111476990 OS=Cucurbita maxima OX=3661 GN=LOC111476990 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI+AV+FQQKKT S
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIFAVVFQQKKTVS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. ExPASy TrEMBL
Match: A0A0A0LQ20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. ExPASy TrEMBL
Match: A0A6J1CR70 (uncharacterized protein LOC111013498 OS=Momordica charantia OX=3673 GN=LOC111013498 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.1e-25
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGV VPIYAVIFQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPIYAVIFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. ExPASy TrEMBL
Match: A0A6J1J2Q3 (uncharacterized protein LOC111480717 OS=Cucurbita maxima OX=3661 GN=LOC111480717 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.2e-25
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKNQKL+M LGV TAFSIGVGVPIYAVIFQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLSMRLGVFTAFSIGVGVPIYAVIFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of HG10022553 vs. ExPASy TrEMBL
Match: A0A5D3C5U1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001330 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.1e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 60

[Close]

BLAST of HG10022553 vs. TAIR 10
Match: AT1G72020.1 (unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          M G  HG  + YYLHAKHMYNLDRMK Q L M+LGV TAFSIGVGVPI+AV+FQQ+KT S
Sbjct: 37 MSGGGHGGYDEYYLHAKHMYNLDRMKYQALKMSLGVFTAFSIGVGVPIFAVVFQQRKTQS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

The following BLAST results are available for this feature:

BLAST of HG10022553 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659116.1	2.0e-25	96.72	uncharacterized protein LOC101215354 [Cucumis sativus]	[more]
XP_022976651.1	3.4e-25	95.08	uncharacterized protein LOC111476990 [Cucurbita maxima] >XP_022976652.1 uncharac...	[more]
XP_004138643.2	3.4e-25	96.72	uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63316.2 hypothetical ...	[more]
XP_038899385.1	4.4e-25	96.72	uncharacterized protein LOC120086696 [Benincasa hispida]	[more]
XP_022143637.1	4.4e-25	96.72	uncharacterized protein LOC111013498 [Momordica charantia] >XP_022143638.1 uncha...	[more]

BLAST of HG10022553 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IGC8	1.6e-25	95.08	uncharacterized protein LOC111476990 OS=Cucurbita maxima OX=3661 GN=LOC111476990...	[more]
A0A0A0LQ20	1.6e-25	96.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1	[more]
A0A6J1CR70	2.1e-25	96.72	uncharacterized protein LOC111013498 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1J2Q3	6.2e-25	95.08	uncharacterized protein LOC111480717 OS=Cucurbita maxima OX=3661 GN=LOC111480717...	[more]
A0A5D3C5U1	8.1e-25	96.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10022553 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72020.1	1.0e-19	73.77	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36003:SF5	TONB-DEPENDENT HEME RECEPTOR A	coord: 2..61
None	No IPR available	PANTHER	PTHR36003	TONB-DEPENDENT HEME RECEPTOR A	coord: 2..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022553.1	HG10022553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane