HG10022550 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022550
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionATP-binding/protein serine/threonine kinase
LocationChr05: 25413784 .. 25414122 (+)
RNA-Seq ExpressionHG10022550
SyntenyHG10022550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGTCCTCGACAAAGTTGTTTTGCCTACTTTTGATGTTCTTCATTGCCTCTGGTACATAAATTAATTTTAATTTTTTACAATCATATATGTTTTACTTTTTCGTAATGTTTATCTTAAATGACATTATCAATTAAAATATTCCAGGAACATTATTGTTCGTGTCAGAGGCGAGAAATGTAGTAAACGTTCCATGCAATAGTCCTAATGATTGTTCCAATCCAACCAAATGTGATTGCAACTTCAACCTATGTTTTTGTCATGGATCATTTGAAAAGAAATTCATTGAAAAAACCTTTCCTGGATATTTGGGAGAACAAAAGCTAACTCCATGA

mRNA sequence

ATGGAGAAGTCCTCGACAAAGTTGTTTTGCCTACTTTTGATGTTCTTCATTGCCTCTGGAACATTATTGTTCGTGTCAGAGGCGAGAAATGTAGTAAACGTTCCATGCAATAGTCCTAATGATTGTTCCAATCCAACCAAATGTGATTGCAACTTCAACCTATGTTTTTGTCATGGATCATTTGAAAAGAAATTCATTGAAAAAACCTTTCCTGGATATTTGGGAGAACAAAAGCTAACTCCATGA

Coding sequence (CDS)

ATGGAGAAGTCCTCGACAAAGTTGTTTTGCCTACTTTTGATGTTCTTCATTGCCTCTGGAACATTATTGTTCGTGTCAGAGGCGAGAAATGTAGTAAACGTTCCATGCAATAGTCCTAATGATTGTTCCAATCCAACCAAATGTGATTGCAACTTCAACCTATGTTTTTGTCATGGATCATTTGAAAAGAAATTCATTGAAAAAACCTTTCCTGGATATTTGGGAGAACAAAAGCTAACTCCATGA

Protein sequence

MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCHGSFEKKFIEKTFPGYLGEQKLTP
Homology
BLAST of HG10022550 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 7.6e-17
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH-G 60
          M KSSTKL  LLLMFFI S   +FV+ ARNVVN+PCNS  DCS+P  CDC  NLCFCH  
Sbjct: 1  MVKSSTKLALLLLMFFIISE--MFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPH 60

Query: 61 SFEKKFIEKTFPGYLGEQKLT 81
            EKKF+   FP +L E+K T
Sbjct: 61 GLEKKFLHNAFPEHLREEKTT 79

BLAST of HG10022550 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH-G 60
          M K  TK     LM FI S   LFVS+ARNVVN+PC S  DCS+P  CDC  NLCFCH  
Sbjct: 1  MVKPLTKFALFFLMVFIIS-EKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPH 60

Query: 61 SFEKKFIEKTFPGYLGEQK 79
            EKKF+ K FP  L E +
Sbjct: 61 GLEKKFLHKAFPESLREDR 78

BLAST of HG10022550 vs. NCBI nr
Match: EXB53848.1 (hypothetical protein L484_006768 [Morus notabilis])

HSP 1 Score: 63.9 bits (154), Expect = 7.2e-07
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNF-NLCFCHG 60
          MEK S ++  L++MF +A G+     EARNVVN+PCN+  DC +P KC C++  LC CH 
Sbjct: 1  MEKVS-RMAILVVMFLLALGSHELGGEARNVVNIPCNTVGDCFDPNKCICSYLKLCMCHQ 60

Query: 61 SFEKKF-IEKTFPGYLGEQKLTP 82
            E KF +E+    YLG  K  P
Sbjct: 61 --ELKFGVEELATTYLGAPKEMP 80

BLAST of HG10022550 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH 59
          MEK S KL  L  +   A G  + V EARN +N PCN+  DC++P KC+C  NLCFCH
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGV-EARN-INTPCNTVKDCADPIKCECRINLCFCH 56

BLAST of HG10022550 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-05
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH 59
          M+K S KL  L  +   A G  + V EARN +N PCN+  DC++P KC+C  NLCFCH
Sbjct: 1  MDKFSFKLIFLATLLVFALGLQVGV-EARN-INTPCNTVKDCADPIKCECRMNLCFCH 56

BLAST of HG10022550 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.7e-18
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH-G 60
          M KSSTKL  LLLMFFI S T  FV++ARNVVN+PCNS  DCS+P  CDC  NLCFCH  
Sbjct: 1  MVKSSTKLALLLLMFFIISET--FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPH 60

Query: 61 SFEKKFIEKTFPGYLGEQKLT 81
            EKKF+   FP +L E+K T
Sbjct: 61 GLEKKFLHNAFPEHLREEKTT 79

BLAST of HG10022550 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH-G 60
          M K  TK     LM FI S   LFVS+ARNVVN+PC S  DCS+P  CDC  NLCFCH  
Sbjct: 1  MVKPLTKFALFFLMVFIIS-EKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPH 60

Query: 61 SFEKKFIEKTFPGYLGEQK 79
            EKKF+ K FP  L E +
Sbjct: 61 GLEKKFLHKAFPESLREDR 78

BLAST of HG10022550 vs. ExPASy TrEMBL
Match: W9QTJ2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006768 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNF-NLCFCHG 60
          MEK S ++  L++MF +A G+     EARNVVN+PCN+  DC +P KC C++  LC CH 
Sbjct: 1  MEKVS-RMAILVVMFLLALGSHELGGEARNVVNIPCNTVGDCFDPNKCICSYLKLCMCHQ 60

Query: 61 SFEKKF-IEKTFPGYLGEQKLTP 82
            E KF +E+    YLG  K  P
Sbjct: 61 --ELKFGVEELATTYLGAPKEMP 80

BLAST of HG10022550 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCHGS 60
          MEKSS KL  ++++  IAS +  F  +ARNVV +PC + NDC +  KCDC  N C C G 
Sbjct: 1  MEKSSLKLALIVVLLLIAS-SFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRCPGE 60

Query: 61 FEKKFIEKTFPGYL 75
           E+ F  K    +L
Sbjct: 61 -EQDFFTKAITNHL 72

BLAST of HG10022550 vs. ExPASy TrEMBL
Match: A0A061GY75 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 1  MEKSSTKLFCLLLMFFIASGTLLFVSEARNVVNVPCNSPNDCSNPTKCDCNFNLCFCH 59
          MEK S KL  L  +   A G  + V EARN +N PCN+  DC++P KC+C  NLCFCH
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGV-EARN-INTPCNTVKDCADPIKCECRINLCFCH 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651915.17.6e-1761.73hypothetical protein Csa_006059 [Cucumis sativus][more]
KGN61957.12.5e-1255.70hypothetical protein Csa_006779 [Cucumis sativus][more]
EXB53848.17.2e-0745.78hypothetical protein L484_006768 [Morus notabilis][more]
EOY32074.13.9e-0551.72Uncharacterized protein TCM_039540 [Theobroma cacao][more]
EOY32073.18.8e-0550.00Uncharacterized protein TCM_039538 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJR09.7e-1862.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1[more]
A0A0A0LMG31.2e-1255.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1[more]
W9QTJ23.5e-0745.78Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006768 PE=4 SV=1[more]
A0A2N9FRQ01.1e-0544.59Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1[more]
A0A061GY751.9e-0551.72Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022550.1HG10022550.1mRNA