HG10022547 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022547
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr05: 25368416 .. 25368613 (-)
RNA-Seq ExpressionHG10022547
SyntenyHG10022547
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTTGATATGATATCTAGTTTAAGCAAAGCCGCTCTATCTGGCATCAATATCAACCACAATGAAATTGTTCATGAAGCTGGATTCCTTGTTTGTTTGGTTGATAGCCTTCCCCTTGATTATCTTGGAATGCCCCTTGGAGATGATCTCAGTTCCTTCTCATTTTGGAATACAATGATAGAAAGAATCTCTTGA

mRNA sequence

ATGTTTGTTGATATGATATCTAGTTTAAGCAAAGCCGCTCTATCTGGCATCAATATCAACCACAATGAAATTGTTCATGAAGCTGGATTCCTTGTTTGTTTGGTTGATAGCCTTCCCCTTGATTATCTTGGAATGCCCCTTGGAGATGATCTCAGTTCCTTCTCATTTTGGAATACAATGATAGAAAGAATCTCTTGA

Coding sequence (CDS)

ATGTTTGTTGATATGATATCTAGTTTAAGCAAAGCCGCTCTATCTGGCATCAATATCAACCACAATGAAATTGTTCATGAAGCTGGATTCCTTGTTTGTTTGGTTGATAGCCTTCCCCTTGATTATCTTGGAATGCCCCTTGGAGATGATCTCAGTTCCTTCTCATTTTGGAATACAATGATAGAAAGAATCTCTTGA

Protein sequence

MFVDMISSLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
Homology
BLAST of HG10022547 vs. NCBI nr
Match: CAN74466.1 (hypothetical protein VITISV_042969 [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS 66
           +L+K+ LSGINI+ ++    A  L C V   PL YLG+PLG + +S SFW+ +++R+S
Sbjct: 197 NLNKSTLSGINISQSQTTKFASVLDCAVSDWPLMYLGLPLGRNPNSISFWDPVLDRVS 254

BLAST of HG10022547 vs. NCBI nr
Match: RVW80770.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS 66
           +++K+ L GIN +H++I   A  L C V + PL YLG+PLG +  S SFW+ +I+R+S
Sbjct: 49  NINKSTLCGINTSHDQISKLALMLGCTVSNWPLMYLGLPLGGNPKSISFWDPVIDRVS 106

BLAST of HG10022547 vs. NCBI nr
Match: XP_010255174.1 (PREDICTED: uncharacterized protein LOC104595909 [Nelumbo nucifera])

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 8  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIER 64
          +L K++L+G+N+   E+   A  L C +   P+ YLG+PLGD+    SFWN ++ER
Sbjct: 2  NLDKSSLAGVNLEERELREYADVLRCAISDWPMAYLGLPLGDNPKKVSFWNPIVER 57

BLAST of HG10022547 vs. NCBI nr
Match: RVW96880.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-05
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERI 65
           +L+K+ LSGINI+ N+       L C +   PL YLG+PL  + +S SFW+ +++R+
Sbjct: 188 NLNKSTLSGINISQNQTARLTSLLDCAISDWPLSYLGLPLEGNTNSLSFWDLVLDRV 244

BLAST of HG10022547 vs. NCBI nr
Match: RVW35026.1 (hypothetical protein CK203_079805 [Vitis vinifera])

HSP 1 Score: 56.6 bits (135), Expect = 9.2e-05
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS 66
           +L K+ + GIN++ N +   A FL C     P+ YLG+PLG +  ++SFW+ +IERIS
Sbjct: 134 NLDKSNIYGINLHQNHLSRLAKFLDCKASGWPILYLGLPLGGNPKAYSFWDLVIERIS 191

BLAST of HG10022547 vs. ExPASy TrEMBL
Match: A5BE85 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_042969 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS 66
           +L+K+ LSGINI+ ++    A  L C V   PL YLG+PLG + +S SFW+ +++R+S
Sbjct: 197 NLNKSTLSGINISQSQTTKFASVLDCAVSDWPLMYLGLPLGRNPNSISFWDPVLDRVS 254

BLAST of HG10022547 vs. ExPASy TrEMBL
Match: A0A438H891 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_781 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS 66
           +++K+ L GIN +H++I   A  L C V + PL YLG+PLG +  S SFW+ +I+R+S
Sbjct: 49  NINKSTLCGINTSHDQISKLALMLGCTVSNWPLMYLGLPLGGNPKSISFWDPVIDRVS 106

BLAST of HG10022547 vs. ExPASy TrEMBL
Match: A0A1U7ZSX8 (uncharacterized protein LOC104595909 OS=Nelumbo nucifera OX=4432 GN=LOC104595909 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 8  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIER 64
          +L K++L+G+N+   E+   A  L C +   P+ YLG+PLGD+    SFWN ++ER
Sbjct: 2  NLDKSSLAGVNLEERELREYADVLRCAISDWPMAYLGLPLGDNPKKVSFWNPIVER 57

BLAST of HG10022547 vs. ExPASy TrEMBL
Match: A0A438IJL2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_695 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-05
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERI 65
           +L+K+ LSGINI+ N+       L C +   PL YLG+PL  + +S SFW+ +++R+
Sbjct: 188 NLNKSTLSGINISQNQTARLTSLLDCAISDWPLSYLGLPLEGNTNSLSFWDLVLDRV 244

BLAST of HG10022547 vs. ExPASy TrEMBL
Match: A0A438DI46 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_079805 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 8   SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS 66
           +L K+ + GIN++ N +   A FL C     P+ YLG+PLG +  ++SFW+ +IERIS
Sbjct: 134 NLDKSNIYGINLHQNHLSRLAKFLDCKASGWPILYLGLPLGGNPKAYSFWDLVIERIS 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN74466.12.4e-0544.83hypothetical protein VITISV_042969 [Vitis vinifera][more]
RVW80770.13.2e-0544.83putative ribonuclease H protein [Vitis vinifera][more]
XP_010255174.14.1e-0541.07PREDICTED: uncharacterized protein LOC104595909 [Nelumbo nucifera][more]
RVW96880.17.0e-0540.35Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW35026.19.2e-0543.10hypothetical protein CK203_079805 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5BE851.2e-0544.83Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438H8911.5e-0544.83Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_781 P... [more]
A0A1U7ZSX82.0e-0541.07uncharacterized protein LOC104595909 OS=Nelumbo nucifera OX=4432 GN=LOC104595909... [more]
A0A438IJL23.4e-0540.35Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A438DI464.4e-0543.10Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022547.1HG10022547.1mRNA