HG10022490 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022490
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L21
LocationChr05: 24815469 .. 24819617 (+)
RNA-Seq ExpressionHG10022490
SyntenyHG10022490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCTCACTCTTTCCCTCTGCGCCAATTTCTCCACTCACTGCCGAATCTCCACCAAGCAGAATCTACCTTCATCAACCCCAATTTCCCACCATGAGTCCTTCAATTTCCCTCTTTCCACTTCATCATCTTCCCTCAAACTCTCTTCTTCTTCGATTCCTTCTTCCCGCCCTGCATTTTCCTTCCTCCTCAAGTCCTCGGAGTCTGAAGCCGCCGTAATCGACTCTGAGCCCGCCGCTTCCCAAACCCTTGAAATCCCCTCCGAACAAGCCCCCAAGCGCGAGGAAATCTTTGCGGTTGTTATGGTTAGTGTTTAATTTCGCTATACTGATTTCTTCTACTTTGATTTTGGATCCTCCTTTTCCCTCATGCTGCTTTCGTTCTGTGTTTGTTTATAATATGGTCAATTTCATTGTTGTGCGTGTTTTGTTTTTCAACAGATTGGATCCCGCCAATATATAGTCTTTCCAGGGCGTTATATCCATACCCAGAGGCTGAAAGGGGCTAACGTTAATGATAAGGTGGGTTTCCTTATTATTCTACTCGTTAAATGTTTGGATTATCTGAGTATCTGAGTTGATTGTTGTATTATATTATACTTATGGAGATTAGAGTATGCTTGCATTGTTTGAATTTCAAGGTAGCACTAATATATCGTGCTGAACAGTGACTTGCATTGTTGTTTACTCTATGTATTTTGTTACCTCCTTCTGAATAGTTAACTAAGAAGTACGAAAGTGGTTTGGGGAATTGATTGGGAGACTTTAGATATTATTTGGGTAAAAGGTGTCATCTCTTATTCTGATGTGTATCTCTTGTCAAGGTGATAGAGTTTCCATGTTTCATTTTGGCATTAATACGTTTGGCAGAGTCTTCCTAAGTTAGAGCCATTATGTCATCTTTTCATGTCTTTGTACTTTTTAGTTTATACTAATTACTTGTACCATCGTGGACACGTCACCATCACAAAGGCCAGTCATTATTGAATAAAGTTTGGTCCTTCATGGTCCTAAGCTTGCTTTTGTTAGTGAAAATTGGTTTCAGCATGTGTAAAATATAATATGGAGCTCGCGTTTGGCATAGTTAACTAGATACTACAGTATGTTTAAGAAGCCTGTTATGAAACATTTGACTTATCCATGAGGGGTCTGAGATCTGGATGCCTCGACTAACTGCGTAGAAGTGATGACTTGAGAACTTGAAGGAGTACTGCTTCATATTATTTTGTGAATGGTGTTGCTGCCTTGGTATCATAGCATGCTATCTGTTGGACATCAAGAGGAAAAAGTGTGAGATGGCAAGAACATATCCTTCGGAAAGATACTTGGTTGGGGATGAACCGTTTGCTAGAAAATTCCTCCTTGATCTTCTATCTTTCTCTAAAAAAGGATGGGGATGTCAAAGAATTTTGGAATTCAGATCTTGGATTCTGGAATTTGAGGTTGAGAAGAAACCAGAGAGATGCTGAAATTGAAGAATTTGGAGCCCTTCGACACTGCCTCTCCTCTTGACAACTTTATGACATAATTTGGAAAGAAAGTCAGGTTCTTCCTCTGCTCTCACAAAGACCATAAATACTCAAAATAAGCTCCAGTCTCCAGAGAATGCCCCATATGGTTGTCTCCACAGCGGTGTACACTCTATAGACAACTTTCAGAATCACAGTCATCTTTAACTATCTTGTGTTTTTGAAAAGACCATTTGGAACTATCTCCTCTCATCCTTCGACAGGCAAACAGGTCTCCCTGAAAACCCAAGGCTTCTTCGCTCTCATGCCTTAGGAGGACACCCTTTCAAAAAGGAAAAGCATTTTTGGGAGGATCTTATTATAGCTTTTCCACCCTCCTTTCTAATTGTGGAGGTCTTTTGTAGTTCTCCCTTTTGAGGTTTTCCTGACCTTTTGTAGTATCATACCGTCAATGAAATTGTTTCTTATCCATACAAATAAAAATAAAATAATATAAAAAAGAATTAATTAGAGCAGTAGAATTTTGTTAGGTTTGGTAGAAATGTTGAAATAATTTAGACAATTCATTCCTGAGTAGTGGTGCTAGAGCTTAATCTTGGGGCAGTGTCTTGAGTCAAAACAGTTTGACAGGAGCATCTTTGTAGCCTAGTTTTCTTTTCCTTTATACTTCAACTCATAATAACAATAATAATAATTTATTATTATAAAAAATACCCTTTAGAAGAAGATCGACTCCTTAGCTATGATTCTGTTATAGCTTAATGAAATAATTGGGGGTGTTTTTCAGACTTCTTCTTCTGTAGAAATAGCACTTTAATGGGAAGAAATAACATTTAATTAATAAAAGAATTGGAAGGAGTTCTCCAGTGTGAAACTGAAGAAACTACCCCTATCCTAAGAACTATCACAAGAAATTTCAATCTTTTGAATAATTATTACTTTTTTACTTAACTACATCTGGATGAGTCTTCACTGCATTGTTATAAGATTTTTCTTTTCCTTTTACCAAAGTCCCACAAAAGAATGTGTCCAATAATTGCTTTGAGGATTTGGAATAAAACATAGGACATGCTACCGTTTGGAAGCAGATTCGCAACTGAGGAAGGGATGATCACAACAGTTTCATCTTTGTTTTCGCATAAAATGCACCAATTGAGAAATAAGTAAATATTATAATGGAACCTTTGTACTTTGTCTTCGACACTGGTTCCTTCCCACCATGGTGATCAAAGGAAGAACTTGATCTTCTAATTCAGCTTCGAGAGAGATTCTCTTCTTTTTCATAACAGAATTTATTGCCGATCCATCTGCTAGAGAAAAGTCATGAAGTTCTTTCTAGCTTCCCAACTTCCATCTTCACCTTTTAAATAACATGTTCCAGGTGGCTATAGAGAGTAATCCATTCTTCTATGTCGCCTTTCTGGAGATTTCTTCTGAAATTCCCTTTTAAGAGCTTTATAATACAATGGATCTAACGAAGAAATGAGCTTTAGAAATTTGACGAGATTATGGTAATTATTGACCGAAATGTATCTGAAAGCCACCATATAAGCATATAAGCACATATATTTACCTAAGTTGTGAATGTTGATTTAGATTGTAGTTTTAGATCCACATCGATTAACTTGAACATCAGGCTTATTGTGCAATAACAGATCTTGTCTCATCTACATATGTGCAATTCATTATGTGATACTGTGATGTTCTTAAAGTTCTCTAAATTTCTGATTGTGCAGATAACTCTGAACAAGGTTTTGCTTGTGGGAACAAAAACTCAGACATACATTGGAAAACCAGTTGTGACAAATGCTGCCGTTCATGCCGTTGTCGAGGAGCAGGTAATACATCAACTTGGTTATCATCCCTTCATCAGAATAAAAAGGAGAAGAAAACAAAGAAATTGAACAATGCTTCTTTTTTTCTTAGATTGTCTTCTTGTTTTTGTTTCTTTTCCTAATTGGTCATTTGTTTCTCTTGATCAGGGATTAGACGACAAGGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGACGAAACATTGGACATCGTCAGGTATTTCTCGGTCTTCGCCTCTCTCTCTCTCTAACCTTGTTGTACCACACAAATTTGCAGCATGTTCTTGGGATTAGCCTTCTCCACCCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTCATTCAACTGCTTCATTCCATAGCTTGAAACTTCTGAACTGATTCACAGACCACAGGAATATGTTAGGATACTTCCCAACTAGAATCACAATCTGGAATATATTGAAATAGAAAGGAAATACGAGAAGATAACCCAAATATTAAGGAACTTGGAACCTCCCCTTTGAGTGAGCACACTCAACCCTAGACCACCTCCACAGAATTCCCCTTTTACTCACTCACCCTCCCTCTATTTATAACAATATTTAGTAACTAACTTTCTATCAAATTACTCCTATACCCCCTTGCTAAAATACCATACTAATATATTCTTATCTAGGTACCTTACCGAATATTTGATGTGCATGAGTTTAAAAAATTACTTGAATACACATTTGTCTATGTAGTTTCTGAATCTTTTTTATCCGAATGATGCAGCCAAATACGCGAATTAGGATAACGGAAATCTCTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

mRNA sequence

ATGGCGTCTCTCACTCTTTCCCTCTGCGCCAATTTCTCCACTCACTGCCGAATCTCCACCAAGCAGAATCTACCTTCATCAACCCCAATTTCCCACCATGAGTCCTTCAATTTCCCTCTTTCCACTTCATCATCTTCCCTCAAACTCTCTTCTTCTTCGATTCCTTCTTCCCGCCCTGCATTTTCCTTCCTCCTCAAGTCCTCGGAGTCTGAAGCCGCCGTAATCGACTCTGAGCCCGCCGCTTCCCAAACCCTTGAAATCCCCTCCGAACAAGCCCCCAAGCGCGAGGAAATCTTTGCGGTTGTTATGATTGGATCCCGCCAATATATAGTCTTTCCAGGGCGTTATATCCATACCCAGAGGCTGAAAGGGGCTAACGTTAATGATAAGATAACTCTGAACAAGGTTTTGCTTGTGGGAACAAAAACTCAGACATACATTGGAAAACCAGTTGTGACAAATGCTGCCGTTCATGCCGTTGTCGAGGAGCAGGGATTAGACGACAAGGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGACGAAACATTGGACATCGTCAGCCAAATACGCGAATTAGGATAACGGAAATCTCTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

Coding sequence (CDS)

ATGGCGTCTCTCACTCTTTCCCTCTGCGCCAATTTCTCCACTCACTGCCGAATCTCCACCAAGCAGAATCTACCTTCATCAACCCCAATTTCCCACCATGAGTCCTTCAATTTCCCTCTTTCCACTTCATCATCTTCCCTCAAACTCTCTTCTTCTTCGATTCCTTCTTCCCGCCCTGCATTTTCCTTCCTCCTCAAGTCCTCGGAGTCTGAAGCCGCCGTAATCGACTCTGAGCCCGCCGCTTCCCAAACCCTTGAAATCCCCTCCGAACAAGCCCCCAAGCGCGAGGAAATCTTTGCGGTTGTTATGATTGGATCCCGCCAATATATAGTCTTTCCAGGGCGTTATATCCATACCCAGAGGCTGAAAGGGGCTAACGTTAATGATAAGATAACTCTGAACAAGGTTTTGCTTGTGGGAACAAAAACTCAGACATACATTGGAAAACCAGTTGTGACAAATGCTGCCGTTCATGCCGTTGTCGAGGAGCAGGGATTAGACGACAAGGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGACGAAACATTGGACATCGTCAGCCAAATACGCGAATTAGGATAACGGAAATCTCTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

Protein sequence

MASLTLSLCANFSTHCRISTKQNLPSSTPISHHESFNFPLSTSSSSLKLSSSSIPSSRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES
Homology
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BLAST of HG10022490 vs. NCBI nr
Match: XP_038899803.1 (50S ribosomal protein L21, chloroplastic [Benincasa hispida])

HSP 1 Score: 367.5 bits (942), Expect = 7.9e-98
Identity = 201/216 (93.06%), Postives = 202/216 (93.52%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTPI----SHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLCANFSTHCRISTK NLPSSTPI    SHH SFNF LS+S S    SS SIPS
Sbjct: 1   MASLTLSLCANFSTHCRISTKHNLPSSTPIFPSNSHHHSFNFELSSSFS----SSFSIPS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 212

[Close]
BLAST of HG10022490 vs. NCBI nr
Match: XP_023521316.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023522458.1 50S ribosomal protein L21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.3 bits (900), Expect = 5.9e-93
Identity = 186/216 (86.11%), Postives = 201/216 (93.06%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTP----ISHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLC++F++HCR+S KQN PSSTP     SH++SFNF LSTSSSSLKLSSSS+ S
Sbjct: 1   MASLTLSLCSHFASHCRLSAKQNFPSSTPNFPSNSHYDSFNFALSTSSSSLKLSSSSVTS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S PA  FLLKSSESEAAVI+SEPAASQT+E+PSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHPALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQ YPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQGYPASTLES 216

[Close]
BLAST of HG10022490 vs. NCBI nr
Match: KAG6607629.1 (50S ribosomal protein L21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037229.1 50S ribosomal protein L21, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.4 bits (890), Expect = 8.5e-92
Identity = 184/216 (85.19%), Postives = 200/216 (92.59%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTP----ISHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTL+LC++F++HCR+STK N PSSTP     SH++SFNF LSTSSSS KLSSSS+ S
Sbjct: 1   MASLTLTLCSHFASHCRLSTKHNFPSSTPNFPSNSHYDSFNFALSTSSSSRKLSSSSVTS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S  A  FLLKSSESEAAVI+SEPAASQT+E+PSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of HG10022490 vs. NCBI nr
Match: XP_022981606.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 346.7 bits (888), Expect = 1.4e-91
Identity = 185/216 (85.65%), Postives = 200/216 (92.59%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTP----ISHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLC++F++HCR+STKQN PSSTP     SH++SFNF LSTSSSS KLSSSS+ S
Sbjct: 1   MASLTLSLCSHFASHCRVSTKQNFPSSTPNFPSNSHYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S  A  FLLKSSESEAAVI+SE AASQT+E+PSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESELAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of HG10022490 vs. NCBI nr
Match: XP_022926213.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 346.3 bits (887), Expect = 1.9e-91
Identity = 185/216 (85.65%), Postives = 200/216 (92.59%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTP----ISHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLC++F++HCR+STKQN PSSTP     S ++SFNF LSTSSSS KLSSSS+ S
Sbjct: 1   MASLTLSLCSHFASHCRLSTKQNFPSSTPNFPSNSPYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S  A  FLLKSSESEAAVI+SEPAASQT+E+PSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of HG10022490 vs. ExPASy Swiss-Prot
Match: P51412 (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-54
Identity = 125/215 (58.14%), Postives = 157/215 (73.02%), Query Frame = 0 

Query: 2   ASLTLSLCANFSTHCRISTKQNLPSSTPISHHESFNFPLSTSSSSLKLSSSSIPSSRPAF 61
           +S TLSLC+ FS HC +++++   SST +      +  L+   +   LS S+  +SR AF
Sbjct: 4   SSATLSLCSTFSAHCNVNSRR---SSTILCSLSKPSLNLAKPLTGF-LSPSTASTSRTAF 63

Query: 62  SFLLKSSESEAAVIDSEP--------AASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFP 121
           +   K +ES   V+++EP          S   E+  E+A KREEIFAV+M+G RQYIVFP
Sbjct: 64  TVAPKFAES---VVEAEPETTDIEAVVVSDVSEVTEEKA-KREEIFAVIMVGGRQYIVFP 123

Query: 122 GRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVF 181
           GRY++TQRLK ANV+D+I LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGL+DKV+VF
Sbjct: 124 GRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVF 183

Query: 182 KYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAA 209
           KYK KK YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 KYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]
BLAST of HG10022490 vs. ExPASy Swiss-Prot
Match: P24613 (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-51
Identity = 101/120 (84.17%), Postives = 110/120 (91.67%), Query Frame = 0 

Query: 93  PKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVV 152
           P REEIFAVV+IGSRQYIV PGR+I+TQRLKGA VNDKI LNKVLLVGTK  TYIG P+V
Sbjct: 118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 177

Query: 153 TNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 212
           TNAAVHAVVEEQ LDDKVIVFKYKKKKNYRRNIGHRQP TRI+IT I+GY+DYPA+TLE+
Sbjct: 178 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237

[Close]
BLAST of HG10022490 vs. ExPASy Swiss-Prot
Match: Q8L9A0 (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.8e-27
Identity = 62/117 (52.99%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 88  PSEQAPK-REEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTY 147
           PSE+  K  E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ +QT 
Sbjct: 129 PSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTI 188

Query: 148 IGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 204
           IG+P++ +A VHAVVEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 189 IGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

[Close]
BLAST of HG10022490 vs. ExPASy Swiss-Prot
Match: B8E0B4 (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=rplU PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.5e-18
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0 

Query: 98  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAV 157
           +F VV  G +QY V  G  ++ ++LK ANV D++ L+KVLLVG + +  IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 60

Query: 158 HAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 200
            A V  Q    KVIVFK+K+KK+YRR  GHRQP T++ I EI
Sbjct: 61  IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101

[Close]
BLAST of HG10022490 vs. ExPASy Swiss-Prot
Match: A0LPF7 (50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 0 

Query: 98  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAV 157
           ++AV+  G RQY V PG+ +  ++L G  V DK+TL++VLL    T   +G+PV+ N AV
Sbjct: 1   MYAVLKSGGRQYEVRPGQVVKVEKLLG-EVGDKVTLDQVLLFSDGTDIQVGQPVLANIAV 60

Query: 158 HAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 200
              + EQG   K+++FK+K++K+YR+  GHRQ  T +R+ EI
Sbjct: 61  QGQIVEQGRHRKIVIFKHKRRKDYRKKQGHRQHYTAVRVEEI 101

[Close]
BLAST of HG10022490 vs. ExPASy TrEMBL
Match: A0A6J1IX10 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480675 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.0e-92
Identity = 185/216 (85.65%), Postives = 200/216 (92.59%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTP----ISHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLC++F++HCR+STKQN PSSTP     SH++SFNF LSTSSSS KLSSSS+ S
Sbjct: 1   MASLTLSLCSHFASHCRVSTKQNFPSSTPNFPSNSHYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S  A  FLLKSSESEAAVI+SE AASQT+E+PSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESELAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of HG10022490 vs. ExPASy TrEMBL
Match: A0A6J1EHE5 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433392 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 9.2e-92
Identity = 185/216 (85.65%), Postives = 200/216 (92.59%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTP----ISHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLC++F++HCR+STKQN PSSTP     S ++SFNF LSTSSSS KLSSSS+ S
Sbjct: 1   MASLTLSLCSHFASHCRLSTKQNFPSSTPNFPSNSPYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           S  A  FLLKSSESEAAVI+SEPAASQT+E+PSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of HG10022490 vs. ExPASy TrEMBL
Match: A0A6J1CPA7 (50S ribosomal protein L21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013483 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.6e-90
Identity = 184/216 (85.19%), Postives = 193/216 (89.35%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTPI----SHHESFNFPLSTSSSSLKLSSSSIPS 60
           MASLTLSLCA F+THCRIS+KQNLPSSTPI    SHH+SFN  LS        SSSS PS
Sbjct: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALS-------CSSSSHPS 60

Query: 61  SRPAFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
           SR    F+L+SSESEAAVI+SEPAASQ +E+P EQAPKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SRAPLPFVLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT TYIGKPVVTNAAVHA+VEEQGLDDKVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 209

[Close]
BLAST of HG10022490 vs. ExPASy TrEMBL
Match: A0A6J1F5X0 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442642 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.1e-88
Identity = 181/212 (85.38%), Postives = 188/212 (88.68%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTPISHHESFNFPLSTSSSSLKLSSSSIPSSRPA 60
           MASLTLSLCANF+THCR+STKQN P STPI             SSS KLS    PSSRPA
Sbjct: 1   MASLTLSLCANFATHCRVSTKQNTPLSTPI-------------SSSFKLS----PSSRPA 60

Query: 61  FSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ 120
            SF+LKSSESEAAVIDSEPAASQ +E+PSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ
Sbjct: 61  LSFVLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ 120

Query: 121 RLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKN 180
           RLKGANVNDKITLNKVLLVGTKTQ YIGKP+VTNAAVHAVVEEQGL+ KVIVFKYKKKKN
Sbjct: 121 RLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLNKKVIVFKYKKKKN 180

Query: 181 YRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           YRRNIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 YRRNIGHRQPNTRIRITEISGYQDYPAATLES 195

[Close]
BLAST of HG10022490 vs. ExPASy TrEMBL
Match: A0A5A7U3C6 (50S ribosomal protein L21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G001040 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 182/213 (85.45%), Postives = 189/213 (88.73%), Query Frame = 0 

Query: 1   MASLTLSLCANFSTHCRISTKQNLPSSTPI-SHHESFNFPLSTSSSSLKLSSSSIPSSRP 60
           MASLTLSLCANFS  CR+ST  +LP STP  S   + +FPLSTSSSSLKLS     SSR 
Sbjct: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLS-----SSRS 60

Query: 61  AFSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHT 120
           AFSFLL SS+SE AVIDS+P ASQ LEIPS+Q P REEIFAVVMIGSRQYIVFPGRYIHT
Sbjct: 61  AFSFLLNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHT 120

Query: 121 QRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKK 180
           QRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKK
Sbjct: 121 QRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKK 180

Query: 181 NYRRNIGHRQPNTRIRITEISGYQDYPAATLES 213
           NYRRNIGHRQPNTRIRITEISGYQDYPA TLES
Sbjct: 181 NYRRNIGHRQPNTRIRITEISGYQDYPATTLES 208

[Close]
BLAST of HG10022490 vs. TAIR 10
Match: AT1G35680.1 (Ribosomal protein L21 )

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-56
Identity = 125/215 (58.14%), Postives = 157/215 (73.02%), Query Frame = 0 

Query: 2   ASLTLSLCANFSTHCRISTKQNLPSSTPISHHESFNFPLSTSSSSLKLSSSSIPSSRPAF 61
           +S TLSLC+ FS HC +++++   SST +      +  L+   +   LS S+  +SR AF
Sbjct: 4   SSATLSLCSTFSAHCNVNSRR---SSTILCSLSKPSLNLAKPLTGF-LSPSTASTSRTAF 63

Query: 62  SFLLKSSESEAAVIDSEP--------AASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFP 121
           +   K +ES   V+++EP          S   E+  E+A KREEIFAV+M+G RQYIVFP
Sbjct: 64  TVAPKFAES---VVEAEPETTDIEAVVVSDVSEVTEEKA-KREEIFAVIMVGGRQYIVFP 123

Query: 122 GRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVF 181
           GRY++TQRLK ANV+D+I LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGL+DKV+VF
Sbjct: 124 GRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVF 183

Query: 182 KYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAA 209
           KYK KK YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 KYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]
BLAST of HG10022490 vs. TAIR 10
Match: AT4G30930.1 (Ribosomal protein L21 )

HSP 1 Score: 122.5 bits (306), Expect = 4.1e-28
Identity = 62/117 (52.99%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 88  PSEQAPK-REEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTY 147
           PSE+  K  E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ +QT 
Sbjct: 129 PSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTI 188

Query: 148 IGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 204
           IG+P++ +A VHAVVEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 189 IGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

The following BLAST results are available for this feature:
BLAST of HG10022490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899803.17.9e-9893.0650S ribosomal protein L21, chloroplastic [Benincasa hispida][more]
XP_023521316.15.9e-9386.1150S ribosomal protein L21, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
KAG6607629.18.5e-9285.1950S ribosomal protein L21, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022981606.11.4e-9185.6550S ribosomal protein L21, chloroplastic-like [Cucurbita maxima][more]
XP_022926213.11.9e-9185.6550S ribosomal protein L21, chloroplastic-like [Cucurbita moschata][more]
BLAST of HG10022490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P514121.1e-5458.1450S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P246133.4e-5184.1750S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P... [more]
Q8L9A05.8e-2752.9950S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
B8E0B46.5e-1850.0050S ribosomal protein L21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX... [more]
A0LPF73.2e-1743.1450S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MP... [more]
BLAST of HG10022490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IX107.0e-9285.6550S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1EHE59.2e-9285.6550S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1CPA76.6e-9085.1950S ribosomal protein L21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1F5X06.1e-8885.3850S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5A7U3C61.8e-8785.4550S ribosomal protein L21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of HG10022490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G35680.18.0e-5658.14Ribosomal protein L21 [more]
AT4G30930.14.1e-2852.99Ribosomal protein L21 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001787Ribosomal protein L21TIGRFAMTIGR00061TIGR00061coord: 99..200
e-value: 4.4E-27
score: 92.4
IPR001787Ribosomal protein L21HAMAPMF_01363Ribosomal_L21coord: 98..201
score: 22.473799
IPR028909Ribosomal protein L21-likePFAMPF00829Ribosomal_L21pcoord: 99..199
e-value: 2.5E-31
score: 107.9
IPR028909Ribosomal protein L21-likePANTHERPTHR2134950S RIBOSOMAL PROTEIN L21coord: 1..211
NoneNo IPR availablePANTHERPTHR21349:SF250S RIBOSOMAL PROTEIN L21, CHLOROPLASTICcoord: 1..211
IPR018258Ribosomal protein L21, conserved sitePROSITEPS01169RIBOSOMAL_L21coord: 170..192
IPR036164L21-like superfamilySUPERFAMILY141091L21p-likecoord: 98..199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022490.1HG10022490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome